Hongkai Ji

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 27

Top Venues

Nature communications

The Journal of infectious diseases

Science advances

Genome biology

Johns Hopkins University Bloomberg School of Public Health

Harvard University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Johns Hopkins University Bloomberg School of Public Health Aug 01 2007

United States

Professor :: Biostatistics

Education History

Harvard University Sep 01 2002 - Jun 30 2007

United States

PHD :: Statistics

Publications

Katerina Roznik, Temesgen E Andargie, T Scott Johnston, Oren Gordon, Yi Wang, Nadine Peart Akindele, Deborah Persaud, Annukka A R Antar, Yukari C Manabe, Weiqiang Zhou, Hongkai Ji, Sean Agbor-Enoh, Andrew H Karaba, Elizabeth A Thompson, Andrea L Cox
Emergency myelopoiesis distinguishes multisystem inflammatory syndrome in children from pediatric severe COVID-19. The Journal of infectious diseases (2024)
Katerina Roznik, Temesgen E Andargie, T Scott Johnston, Oren Gordon, Yi Wang, Nadine Peart Akindele, Deborah Persaud, Annukka A R Antar, Yukari C Manabe, Weiqiang Zhou, Hongkai Ji, Sean Agbor-Enoh, Andrew H Karaba, Elizabeth A Thompson, Andrea L Cox
Emergency Myelopoiesis Distinguishes Multisystem Inflammatory Syndrome in Children From Pediatric Severe Coronavirus Disease 2019. The Journal of infectious diseases 230 (2) (2024)
Katerina Roznik, Temesgen E Andargie, T Scott Johnston, Oren Gordon, Yi Wang, Nadine Peart Akindele, Deborah Persaud, Annukka A R Antar, Yukari C Manabe, Weiqiang Zhou, Hongkai Ji, Sean Agbor-Enoh, Andrew H Karaba, Elizabeth A Thompson, Andrea L Cox
Emergency myelopoiesis distinguishes multisystem inflammatory syndrome in children from pediatric severe COVID-19. The Journal of infectious diseases (2024)
Katerina Roznik, Temesgen E Andargie, T Scott Johnston, Oren Gordon, Yi Wang, Nadine Peart Akindele, Deborah Persaud, Annukka A R Antar, Yukari C Manabe, Weiqiang Zhou, Hongkai Ji, Sean Agbor-Enoh, Andrew H Karaba, Elizabeth A Thompson, Andrea L Cox
Emergency Myelopoiesis Distinguishes Multisystem Inflammatory Syndrome in Children From Pediatric Severe Coronavirus Disease 2019. The Journal of infectious diseases 230 (2) (2024)
Wei Liu, Xu Liao, Ziye Luo, Yi Yang, Mai Chan Lau, Yuling Jiao, Xingjie Shi, Weiwei Zhai, Hongkai Ji, Joe Poh Sheng Yeong, Jin Liu
Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST. Nature communications 14 (1) (2023)
Eugene Shenderov, Angelo M DeMarzo, Tamara L Lotan, Hao Wang, Sin Chan, Su Jin Lim, Hongkai Ji, Mohamad E Allaf, Carolyn Chapman, Paul A Moore, Francine Chen, Kristina Sorg, Andrew M White, Sarah E Church, Briana Hudson, Paul A Fields, Shaohui Hu, Samuel R Denmeade, Kenneth J Pienta, Christian P Pavlovich, Ashley E Ross, Charles G Drake, Drew M Pardoll, Emmanuel S Antonarakis
Neoadjuvant enoblituzumab in localized prostate cancer: a single-arm, phase 2 trial. Nature medicine (2023)
Wenpin Hou, Zhicheng Ji, Zeyu Chen, E John Wherry, Stephanie C Hicks, Hongkai Ji
A statistical framework for differential pseudotime analysis with multiple single-cell RNA-seq samples. Nature communications 14 (1) (2023)
Mingming Zhao, Prashant Chauhan, Cheryl A Sherman, Amit Singh, Mary Kaileh, Krystyna Mazan-Mamczarz, Hongkai Ji, Jaimy Joy, Satabdi Nandi, Supriyo De, Yongqing Zhang, Jinshui Fan, Kevin G Becker, P'ng Loke, Weiqiang Zhou, Ranjan Sen
NF-κB subunits direct kinetically distinct transcriptional cascades in antigen receptor-activated B cells. Nature immunology (2023)
Kasturee Jagirdar, Marie E Portuallo, Meihan Wei, Matthew Wilhide, Jeremy A Bravo Narula, Bailey M Robertson, Gretchen M Alicea, Crystal Aguh, Min Xiao, Tetiana Godok, Dylan Fingerman, Gregory Schuyler Brown, Meenhard Herylyn, Vissy M Elad, Xinyu Guo, Eneda Toska, Daniel J Zabransky, Bradley Wubbenhorst, Katherine L Nathanson, Shawn Kwatra, Yogesh Goyal, Hongkai Ji, Jingjing Liu, Vito W Rebecca
ERK hyperactivation serves as a unified mechanism of escape in intrinsic and acquired CDK4/6 inhibitor resistance in acral lentiginous melanoma. Oncogene (2023)
Guanghao Qi, Benjamin J Strober, Joshua M Popp, Rebecca Keener, Hongkai Ji, Alexis J Battle
Single-cell allele-specific expression analysis reveals dynamic and cell-type-specific regulatory effects. Nature communications 14 (1) (2023)
Wei Liu, Xu Liao, Ziye Luo, Yi Yang, Mai Chan Lau, Yuling Jiao, Xingjie Shi, Weiwei Zhai, Hongkai Ji, Joe Poh Sheng Yeong, Jin Liu
Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST. Nature communications 14 (1) (2023)
Wei Liu, Xu Liao, Ziye Luo, Yi Yang, Mai Chan Lau, Yuling Jiao, Xingjie Shi, Weiwei Zhai, Hongkai Ji, Joe Poh Sheng Yeong, Jin Liu
Author Correction: Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST. Nature communications 14 (1) (2023)
Wei Liu, Xu Liao, Ziye Luo, Yi Yang, Mai Chan Lau, Yuling Jiao, Xingjie Shi, Weiwei Zhai, Hongkai Ji, Joe Poh Sheng Yeong, Jin Liu
Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST. Nature communications 14 (1) (2023)
Wei Liu, Xu Liao, Ziye Luo, Yi Yang, Mai Chan Lau, Yuling Jiao, Xingjie Shi, Weiwei Zhai, Hongkai Ji, Joe Poh Sheng Yeong, Jin Liu
Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST. Nature communications 14 (1) (2023)
Arbor G Dykema, Jiajia Zhang, Laurene S Cheung, Sydney Connor, Boyang Zhang, Zhen Zeng, Christopher M Cherry, Taibo Li, Justina X Caushi, Marni Nishimoto, Andrew J Munoz, Zhicheng Ji, Wenpin Hou, Wentao Zhan, Dipika Singh, Tianbei Zhang, Rufiaat Rashid, Marisa Mitchell-Flack, Sadhana Bom, Ada Tam, Nick Ionta, Thet H K Aye, Yi Wang, Camille A Sawosik, Lauren E Tirado, Luke M Tomasovic, Derek VanDyke, Jamie B Spangler, Valsamo Anagnostou, Stephen Yang, Jonathan D Spicer, Roni Rayes, Janis M Taube, Julie R Brahmer, Patrick M Forde, Srinivasan Yegnasubramanian, Hongkai Ji, Drew M Pardoll, Kellie N Smit
Lung tumor-infiltrating T reg have divergent transcriptional profiles and function linked to checkpoint blockade response. Science immunology 8 (87) (2023)
Abigail V Sharrock, Timothy S Mulligan, Kelsi R Hall, Elsie M Williams, David T White, Liyun Zhang, Kevin Emmerich, Frazer Matthews, Saumya Nimmagadda, Selena Washington, Katherine D Le, Danielle Meir-Levi, Olivia L Cox, Meera T Saxena, Anne L Calof, Martha E Lopez-Burks, Arthur D Lander, Ding Ding, Hongkai Ji, David F Ackerley, Jeff S Mumm
NTR 2.0: a rationally engineered prodrug-converting enzyme with substantially enhanced efficacy for targeted cell ablation. Nature methods 19 (2) (2022)
Rachel K Lex, Weiqiang Zhou, Zhicheng Ji, Kristin N Falkenstein, Kaleigh E Schuler, Kathryn E Windsor, Joseph D Kim, Hongkai Ji, Steven A Vokes
GLI transcriptional repression is inert prior to Hedgehog pathway activation. Nature communications 13 (1) (2022)
Temesgen Andargie, Weiqiang Zhou, Andrew Karaba, Taibo Li, Fayaz Seifuddin, Alex Rittenhouse, Hyesik Kong, Komudi Singh, Robert Woodward, Aldo Iacono, Robin Avery, Mehdi Pirooznia, Moon Jang, Hongkai Ji, Andrea Cox, Sean Agbor-Enoh
Integrated cell-free DNA and cytokine analysis uncovers distinct tissue injury and immune response patterns in solid organ transplant recipients with COVID-19. Research square (2022)
Guoying Wang, Dana M Foney, Jessica DiBari, Xiumei Hong, Nakiya Showell, Kwang Sik Kim, Hongkai Ji, Colleen Pearson, Gabrielle Mirolli, Serena Rusk, Josh Sharfstein, Tina L Cheng, Barry Zuckerman, Xiaobin Wang
A prospective cohort study on the intersectionality of obesity, chronic disease, social factors, and incident risk of COVID-19 in US low-income minority middle-age mothers. International journal of obesity (2005) 45 (12) (2021)
Xitiz Chamling, Alyssa Kallman, Weixiang Fang, Cynthia A Berlinicke, Joseph L Mertz, Prajwal Devkota, Itzy E Morales Pantoja, Matthew D Smith, Zhicheng Ji, Calvin Chang, Aniruddha M Kaushik, Liben Chen, Katharine A Whartenby, Peter A Calabresi, Hai-Quan Mao, Hongkai Ji, Tza-Huei Wang, Donald J Zack
Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells. Nature communications 12 (1) (2021)
Minling Gao, Yi Fu, Weiqiang Zhou, Gege Gui, Bachuchu Lal, Yunqing Li, Shuli Xia, Hongkai Ji, Charles G Eberhart, John Laterra, Mingyao Ying
EGFR Activates a TAZ-Driven Oncogenic Program in Glioblastoma. Cancer research 81 (13) (2021)
Michael A Koldobskiy, Garrett Jenkinson, Jordi Abante, Varenka A Rodriguez DiBlasi, Weiqiang Zhou, Elisabet Pujadas, Adrian Idrizi, Rakel Tryggvadottir, Colin Callahan, Challice L Bonifant, Karen R Rabin, Patrick A Brown, Hongkai Ji, John Goutsias, Andrew P Feinberg
Converging genetic and epigenetic drivers of paediatric acute lymphoblastic leukaemia identified by an information-theoretic analysis. Nature biomedical engineering 5 (4) (2021)
Justina X Caushi, Jiajia Zhang, Zhicheng Ji, Ajay Vaghasia, Boyang Zhang, Emily Han-Chung Hsiue, Brian J Mog, Wenpin Hou, Sune Justesen, Richard Blosser, Ada Tam, Valsamo Anagnostou, Tricia R Cottrell, Haidan Guo, Hok Yee Chan, Dipika Singh, Sampriti Thapa, Arbor G Dykema, Poromendro Burman, Begum Choudhury, Luis Aparicio, Laurene S Cheung, Mara Lanis, Zineb Belcaid, Margueritta El Asmar, Peter B Illei, Rulin Wang, Jennifer Meyers, Kornel Schuebel, Anuj Gupta, Alyza Skaist, Sarah J Wheelan, Jarushka Naidoo, Kristen A Marrone, Malcolm Brock, Jinny Ha, Errol L Bush, Bernard J Park, Matthew Bott, David R Jones, Joshua E Reuss, Victor E Velculescu, Jamie E Chaft, Kenneth W Kinzler, Shibin Zhou, Bert Vogelstein, Janis M Taube, Matthew D Hellmann, Julie R Brahmer, Taha Merghoub, Patrick M Forde, Srinivasan Yegnasubramanian, Hongkai Ji, Drew M Pardoll, Kellie N Smit
Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers. Nature 596 (7870) (2021)
Zhicheng Ji, Weiqiang Zhou, Wenpin Hou, Hongkai Ji
Single-cell ATAC-seq signal extraction and enhancement with SCATE. Genome biology 21 (1) (2020)
Xiang Qiu, Fei Ma, Mingming Zhao, Yaqiang Cao, Lillian Shipp, Angela Liu, Arun B Dutta, Amit Singh, Fatima Zohra Braikia, Supriyo De, William H Wood, Kevin G Becker, Weiqiang Zhou, Hongkai Ji, Keji Zhao, Michael L Atchison, Ranjan Sen
Altered 3D chromatin structure permits inversional recombination at the IgH locus. Science advances 6 (33) (2020)
Jie Wang, Cristina Zibetti, Peng Shang, Srinivasa R Sripathi, Pingwu Zhang, Marisol Cano, Thanh Hoang, Shuli Xia, Hongkai Ji, Shannath L Merbs, Donald J Zack, James T Handa, Debasish Sinha, Seth Blackshaw, Jiang Qian
ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration. Nature communications 9 (1) (2018)
Weiqiang Zhou, Ben Sherwood, Zhicheng Ji, Yingchao Xue, Fang Du, Jiawei Bai, Mingyao Ying, Hongkai Ji
Genome-wide prediction of DNase I hypersensitivity using gene expression. Nature communications 8 (1) (2017)

Hongkai Ji.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Hongkai Ji