James R Lindsay (James Lindsay)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 19

Top Topics

Artificial Intelligence

Hodgkin Lymphoma

Top Venues

Clinical cancer research : an official journal of the American Association for Cancer Research

JCO precision oncology

Cancer research communications

Cancer research

This page only lists publications with an associated author ORCID identifier.

Publications

Kenneth L Kehl, Tali Mazor, Pavel Trukhanov, James R Lindsay, Matthew R Galvin, Karim S Farhat, Emily McClure, Antonio Giordano, Leena Gandhi, Deborah Schrag, Michael J Hassett, Ethan Cerami
Identifying Oncology Clinical Trial Candidates Using Artificial Intelligence Predictions of Treatment Change: A Pilot Implementation Study. JCO precision oncology 8 (2024)
Edwin Roger Parra Cuentes, Jianhua Zhang, Dzifa Yawa Duose, Edgar G Kozlova, Mary W Redman, Hong Chen, Ganiraju C Manyam, Gayatri Kumar, Jianhua Zhang, Xingzhi Song, Rossana Lazcano, Mario L Marques-Piubelli, Caddie Laberiano Fernández, Frank R Rojas Alvarez, Baili Zhang, Len Taing, Aashna Jhaveri, Jacob Geisberg, Jennifer Altreuter, Franziska Michor, James Provencher, Joyce Yu, Ethan Cerami, Radim Moravec, Kasthuri Kannan, Rajyalakshmi Luthra, Gheath Al-Atrash, Hsin-Hui Huang, Hui Xie, Manishkumar Patel, Kai Nie, Jocelyn Harris, Kimberly Argueta, James R Lindsay, Roshni Biswas, Stephen Van Nostrand, Seunghee Kim-Schulze, Jhanelle E Gray, Roy S Herbst, Ignacio I Wistuba, Scott N Gettinger, Karen Kelly, Lyudmila Bazhenova, Sacha Gnjatic, Jiun-Kae Jack Lee, Jianjun Zhang, Cara L Haymaker
Multi-omics Analysis Reveals Immune Features Associated with Immunotherapy Benefit in Patients with Squamous Cell Lung Cancer from Phase III Lung-MAP S1400I Trial. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (8) (2024)
Edgar G Kozlova, Hsin-Hui Huang, Opeyemi A Jagede, Kevin Tuballes, Diane M Del Valle, Geoffrey Kelly, Manishkumar Patel, Hui Xie, Jocelyn Harris, Kimberly Argueta, Kai Nie, Vanessa Barcessat, Radim Moravec, Jennifer Altreuter, Dzifa Yawa Duose, Brad S Kahl, Stephen M Ansell, Joyce Yu, Ethan Cerami, James R Lindsay, Ignacio I Wistuba, Seunghee Kim-Schulze, Catherine S Diefenbach, Sacha Gnjatic
Tumor-Immune Signatures of Treatment Resistance to Brentuximab Vedotin with Ipilimumab and/or Nivolumab in Hodgkin Lymphoma. Cancer research communications 4 (7) (2024)
Edwin Roger Parra Cuentes, Jianhua Zhang, Dzifa Yawa Duose, Edgar G Kozlova, Mary W Redman, Hong Chen, Ganiraju C Manyam, Gayatri Kumar, Jianhua Zhang, Xingzhi Song, Rossana Lazcano, Mario L Marques-Piubelli, Caddie Laberiano Fernández, Frank R Rojas Alvarez, Baili Zhang, Len Taing, Aashna Jhaveri, Jacob Geisberg, Jennifer Altreuter, Franziska Michor, James Provencher, Joyce Yu, Ethan Cerami, Radim Moravec, Kasthuri Kannan, Rajyalakshmi Luthra, Gheath Al-Atrash, Hsin-Hui Huang, Hui Xie, Manishkumar Patel, Kai Nie, Jocelyn Harris, Kimberly Argueta, James R Lindsay, Roshni Biswas, Stephen Van Nostrand, Seunghee Kim-Schulze, Jhanelle E Gray, Roy S Herbst, Ignacio I Wistuba, Scott N Gettinger, Karen Kelly, Lyudmila Bazhenova, Sacha Gnjatic, Jiun-Kae Jack Lee, Jianjun Zhang, Cara L Haymaker
Multi-omics analysis reveals immune features associated with immunotherapy benefit in squamous cell lung cancer patients from Phase III Lung-MAP S1400I trial. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Edwin Roger Parra Cuentes, Jianhua Zhang, Dzifa Yawa Duose, Edgar G Kozlova, Mary W Redman, Hong Chen, Ganiraju C Manyam, Gayatri Kumar, Jianhua Zhang, Xingzhi Song, Rossana Lazcano, Mario L Marques-Piubelli, Caddie Laberiano Fernández, Frank R Rojas Alvarez, Baili Zhang, Len Taing, Aashna Jhaveri, Jacob Geisberg, Jennifer Altreuter, Franziska Michor, James Provencher, Joyce Yu, Ethan Cerami, Radim Moravec, Kasthuri Kannan, Rajyalakshmi Luthra, Gheath Al-Atrash, Hsin-Hui Huang, Hui Xie, Manishkumar Patel, Kai Nie, Jocelyn Harris, Kimberly Argueta, James R Lindsay, Roshni Biswas, Stephen Van Nostrand, Seunghee Kim-Schulze, Jhanelle E Gray, Roy S Herbst, Ignacio I Wistuba, Scott N Gettinger, Karen Kelly, Lyudmila Bazhenova, Sacha Gnjatic, Jiun-Kae Jack Lee, Jianjun Zhang, Cara L Haymaker
Multi-omics Analysis Reveals Immune Features Associated with Immunotherapy Benefit in Patients with Squamous Cell Lung Cancer from Phase III Lung-MAP S1400I Trial. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (8) (2024)
Kenneth L Kehl, Tali Mazor, Pavel Trukhanov, James R Lindsay, Matthew R Galvin, Karim S Farhat, Emily McClure, Antonio Giordano, Leena Gandhi, Deborah Schrag, Michael J Hassett, Ethan Cerami
Identifying Oncology Clinical Trial Candidates Using Artificial Intelligence Predictions of Treatment Change: A Pilot Implementation Study. JCO precision oncology 8 (2024)
Edgar G Kozlova, Hsin-Hui Huang, Opeyemi A Jagede, Kevin Tuballes, Diane M Del Valle, Geoffrey Kelly, Manishkumar Patel, Hui Xie, Jocelyn Harris, Kimberly Argueta, Kai Nie, Vanessa Barcessat, Radim Moravec, Jennifer Altreuter, Dzifa Yawa Duose, Brad S Kahl, Stephen M Ansell, Joyce Yu, Ethan Cerami, James R Lindsay, Ignacio I Wistuba, Seunghee Kim-Schulze, Catherine S Diefenbach, Sacha Gnjatic
Tumor-immune signatures of treatment resistance to brentuximab vedotin with ipilimumab and/or nivolumab in Hodgkin lymphoma. Cancer research communications (2024)
Kenneth L Kehl, Tali Mazor, Pavel Trukhanov, James R Lindsay, Matthew R Galvin, Karim S Farhat, Emily McClure, Antonio Giordano, Leena Gandhi, Deborah Schrag, Michael J Hassett, Ethan Cerami
Identifying Oncology Clinical Trial Candidates Using Artificial Intelligence Predictions of Treatment Change: A Pilot Implementation Study. JCO precision oncology 8 (2024)
Edgar G Kozlova, Hsin-Hui Huang, Opeyemi A Jagede, Kevin Tuballes, Diane M Del Valle, Geoffrey Kelly, Manishkumar Patel, Hui Xie, Jocelyn Harris, Kimberly Argueta, Kai Nie, Vanessa Barcessat, Radim Moravec, Jennifer Altreuter, Dzifa Yawa Duose, Brad S Kahl, Stephen M Ansell, Joyce Yu, Ethan Cerami, James R Lindsay, Ignacio I Wistuba, Seunghee Kim-Schulze, Catherine S Diefenbach, Sacha Gnjatic
Tumor-Immune Signatures of Treatment Resistance to Brentuximab Vedotin with Ipilimumab and/or Nivolumab in Hodgkin Lymphoma. Cancer research communications 4 (7) (2024)
Kenneth L Kehl, Tali Mazor, Pavel Trukhanov, James R Lindsay, Matthew R Galvin, Karim S Farhat, Emily McClure, Antonio Giordano, Leena Gandhi, Deborah Schrag, Michael J Hassett, Ethan Cerami
Identifying Oncology Clinical Trial Candidates Using Artificial Intelligence Predictions of Treatment Change: A Pilot Implementation Study. JCO precision oncology 8 (2024)
Edgar G Kozlova, Hsin-Hui Huang, Opeyemi A Jagede, Kevin Tuballes, Diane M Del Valle, Geoffrey Kelly, Manishkumar Patel, Hui Xie, Jocelyn Harris, Kimberly Argueta, Kai Nie, Vanessa Barcessat, Radim Moravec, Jennifer Altreuter, Dzifa Yawa Duose, Brad S Kahl, Stephen M Ansell, Joyce Yu, Ethan Cerami, James R Lindsay, Ignacio I Wistuba, Seunghee Kim-Schulze, Catherine S Diefenbach, Sacha Gnjatic
Tumor-Immune Signatures of Treatment Resistance to Brentuximab Vedotin with Ipilimumab and/or Nivolumab in Hodgkin Lymphoma. Cancer research communications 4 (7) (2024)
Ino De Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc Tran, Luke Sikina, Tali Mazor, Xiang Li, Angelica Ochoa, Gaofei Zhao, Bryan Lai, Adam Abeshouse, Diana Baiceanu, Ersin Ciftci, Ugur Dogrusoz, Andrew Dufilie, Ziya Erkoc, Elena G Lara, Zhaoyuan Fu, Benjamin E Gross, Charles D Haynes, Allison P Heath, David M Higgins, Prasanna Jagannathan, Karthik Kalletla, Priti Kumari, James R Lindsay, Aaron Lisman, Bas Leenknegt, Pieter Lukasse, Divya Madala, Ramyasree Madupuri, Pim van Nierop, Oleguer Plantalech, Joyce Quach, Adam C Resnick, Sander Y A Rodenburg, Baby A Satravada, Fedde Schaeffer, Robert Sheridan, Jessica Singh, Rajat Sirohi, Selcuk Onur Sumer, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Kelsey Zhu, Nicole Rusk, Samantha Brown, Jessica A Lavery, Katherine S Panageas, Julia E Rudolph, Michele L LeNoue-Newton, Jeremy L Warner, Xindi Guo, Haley Hunter-Zinck, Thomas V Yu, Shirin Pillai, Chelsea Nichols, Stuart M Gardos, John Philip, Genie Bpc Core Team, Aacr Project Genie Consortium, Kenneth L Kehl, Gregory J Riely, Deborah Schrag, Jocelyn Lee, Michael V Fiandalo, Shawn M Sweeney, Trevor J Pugh, Chris Sander, Ethan Cerami, Jianjiong Gao, Nikolaus Schultz
Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal. Cancer research (2023)
Biagio Ricciuti, Arielle Elkrief, Joao M Victor Alessi, Xinan Wang, Yvonne Y Li, Hersh V Gupta, Daniel M Muldoon, Arrien A Bertram, Federica Pecci, Giuseppe Lamberti, Alessandro Di Federico, Adriana P Barrichello, Victor R Vaz, Malini M Gandhi, Elinton Lee, Geoffrey I Shapiro, Hyesun Park, Mizuki Nishino, James R Lindsay, Kristen D Felt, Bijaya Sharma, Andrew D Cherniak, Scott J Rodig, Daniel R Gomez, Narek Shaverdian, Mehrdad Rakaee, Chaitanya Bandlamudi, Marc Ladanyi, Pasi A Janne, Adam J Schoenfeld, Lynette M Sholl, Mark M Awad, Michael L Cheng
Clinicopathologic, genomic, and immunophenotypic landscape of ATM mutations in non-small cell lung cancer. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Harry Klein, Tali Mazor, Ethan Siegel, Pavel Trukhanov, Andrea Ovalle, Catherine Del Vecchio Fitz, Zachary Zwiesler, Priti Kumari, Bernd Van Der Veen, Eric Marriott, Jason Hansel, Joyce Yu, Adem Albayrak, Susan Barry, Rachel B Keller, Laura E MacConaill, Neal Lindeman, Bruce E Johnson, Barrett J Rollins, Khanh T Do, Brian Beardslee, Geoffrey Shapiro, Suzanne Hector-Barry, John Methot, Lynette Sholl, James R Lindsay, Michael J Hassett, Ethan Cerami
MatchMiner: an open-source platform for cancer precision medicine. NPJ precision oncology 6 (1) (2022)
Trevor J Pugh, Jonathan L Bell, Jeffrey P Bruce, Gary J Doherty, Matthew R Galvin, Michelle F Green, Haley Hunter-Zinck, Priti Kumari, Michele L LeNoue-Newton, Marilyn M Li, James R Lindsay, Tali Mazor, Andrea Ovalle, Stephen-John Sammut, Nikolaus Schultz, Thomas V Yu, Shawn M Sweeney, Brady Bernard, null null
AACR Project GENIE: 100,000 Cases and Beyond. Cancer discovery 12 (9) (2022)
Kenneth L Kehl, Stefan Groha, Eva M Lepisto, Haitham A Elmarakeby, James R Lindsay, Alexander Gusev, Eliezer M Van Allen, Michael J Hassett, Deborah Schrag
Clinical Inflection Point Detection on the Basis of EHR Data to Identify Clinical Trial-Ready Patients With Cancer. JCO clinical cancer informatics 5 (2021)
Helen X Chen, Minkyung Song, Holden T Maecker, Sacha Gnjatic, David R Patton, Jiun-Kae Jack Lee, Stacey J Adam, Radim Moravec, Xiaole Shirley Liu, Ethan Cerami, James R Lindsay, Ming Tang, F Stephen Hodi, Catherine J Wu, Ignacio I Wistuba, Gheath Al-Atrash, Chantale Bernatchez, Sean C Bendall, Stephen M Hewitt, Elad Sharon, Howard Streicher, Rebecca A Enos, Melissa D Bowman, Valerie M Tatard-Leitman, Beatriz Sanchez-Espiridion, Srinika Ranasinghe, Mina Pichavant, Diane M Del Valle, Joyce Yu, Sylvie Janssens, Jenny Peterson-Klaus, Cathy Rowe, Gerold Bongers, Robert R Jenq, Chia-Chi Chang, Jeffrey S Abrams, Margaret M Mooney, James H Doroshow, Lyndsay N Harris, Magdalena Thurin
Network for Biomarker Immunoprofiling for Cancer Immunotherapy: Cancer Immune Monitoring and Analysis Centers and Cancer Immunologic Data Commons (CIMAC-CIDC). Clinical cancer research : an official journal of the American Association for Cancer Research 27 (18) (2021)
Arta M Monjazeb, Anita Giobbie-Hurder, Ana Lako, Emily M Thrash, Ryan C Brennick, Katrina Z Kao, Claire Manuszak, Ryan D Gentzler, Anteneh A Tesfaye, Salma K Jabbour, Olatunji B Alese, Osama E Rahma, James M Cleary, Elad Sharon, Harvey J Mamon, May Cho, Howard Streicher, Helen X Chen, Mansoor M Ahmed, Adrian Mariño-Enríquez, Seunghee Kim-Schulze, Sacha Gnjatic, Emanual Maverakis, Alina I Marusina, Alexander A Merleev, Mariano Severgnini, Kathleen L Pfaff, James R Lindsay, Jason L Weirather, Srinika Ranasinghe, Alexander Spektor, Scott J Rodig, Stephen F Hodi, Jonathan D Schoenfeld
A Randomized Trial of Combined PD-L1 and CTLA-4 Inhibition with Targeted Low-Dose or Hypofractionated Radiation for Patients with Metastatic Colorectal Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (9) (2021)
Zexian Zeng, Jingxin Fu, Carrie Cibulskis, Aashna Jhaveri, Curtis Gumbs, Biswajit Das, Beatriz Sanchez-Espiridion, Sylvie Janssens, Len Taing, Jin Wang, James R Lindsay, Tomas Vilimas, Jianhua Zhang, Collin Tokheim, Avinash Sahu, Peng Jiang, Chunhua Yan, Dzifa Yawa Duose, Ethan Cerami, Li Chen, David Cohen, Qingrong Chen, Rebecca A Enos, Xin Huang, Jiun-Kae Jack Lee, Yang Liu, Donna S Neuberg, Cu Nguyen, Candace Patterson, Sharmistha Sarkar, Sachet A Shukla, Ming Tang, Junko Tsuji, Mohamed Uduman, Xiaoman Wang, Jason L Weirather, Jijun Yu, Joyce Yu, Daoud Meerzaman, Magdalena Thurin, Andrew Futreal, Chris Karlovich, Stacey B Gabriel, Ignacio Ivan Wistuba, X Shirley Liu, Catherine J Wu
Cross-Site Concordance Evaluation of Tumor DNA and RNA Sequencing Platforms for the CIMAC-CIDC Network. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (18) (2020)