Jianjun Zhang

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 80

Top Topics

Small Cell Lung Cancer

Tyrosine Kinase

Artificial Intelligence

Top Venues

Nature communications

Research square

Clinical cancer research : an official journal of the American Association for Cancer Research

This page only lists publications with an associated author ORCID identifier.

Publications

Ying Jin, Yuefeng Wu, Alexandre Reuben, Liang Zhu, Carl M Gay, Qingzhe Wu, Xintong Zhou, Haomin Mo, Qi Zheng, Junyu Ren, Zhaoyuan Fang, Teng Peng, Nan Wang, Liang Ma, null null, Yun Fan, Hai Song, Jianjun Zhang, Ming Chen
Single-cell and spatial proteo-transcriptomic profiling reveals immune infiltration heterogeneity associated with neuroendocrine features in small cell lung cancer. Cell discovery 10 (1) (2024)
Kang Qin, Kaiwen Wang, Shenduo Li, Lingzhi Hong, Priyadharshini Padmakumar, Rinsurongkawong Waree, Shawna M Hubert, Xiuning Li, Natalie Vokes, Kunal Rai, Ara Vaporciyan, Don L Gibbons, John V Heymach, Jiun-Kae Jack Lee, Scott E Woodman, Caroline Chung, David A Jaffray, Mehmet Altan, Yanyan Lou, Jianjun Zhang
Clinical Benefit from Docetaxel +/- Ramucirumab Is Not Associated with Mutation Status in Metastatic Non-Small-Cell Lung Cancer Patients Who Progressed on Platinum Doublets and Immunotherapy. Cancers 16 (5) (2024)
Jia Wu, Muhammad Aminu, Lingzhi Hong, Natalie I Vokes, Stephanie Tzouanas Schmidt, Maliazurina B Saad, Bo Zhu, Xiuning Li, Cascone Tina, Ajay Sheshadri, David Jaffray, P Andrew Futreal, Jiun-Kae Jack Lee, Lauren Averett Byers, Don L Gibbons, John Victor Heymach, Ken Chen, Chao Cheng, Jianjun Zhang, Bo Wang
Joint multi-omics discriminant analysis with consistent representation learning using PANDA. Research square (2024)
Jiefei Han, Yiting Dong, Xiuli Zhu, Alexandre Reuben, Jianjun Zhang, Jiachen Xu, Hua Bai, Jianchun Duan, Rui Wan, Jie Zhao, Jing Bai, Xuefeng Xia, Xin Yi, Chao Cheng, Jie Wang, Zhijie Wang
Assessment of human leukocyte antigen-based neoantigen presentation to determine pan-cancer response to immunotherapy. Nature communications 15 (1) (2024)
Xin Hu, Bo Zhu, Natalie I Vokes, Junya Fujimoto, Frank R Rojas Alvarez, Simon Heeke, Andre L Moreira, Luisa Maren Solis Soto, Cara L Haymaker, Vamsidhar Velcheti, Daniel H Sterman, Harvey I Pass, Chao Cheng, Jiun-Kae Jack Lee, Jianhua Zhang, Zhubo Wei, Jia Wu, Xiuning Li, Edwin Justin Ostrin, Iakovos Toumazis, Don L Gibbons, Dan Su, Junya Fukuoka, Mara B Antonoff, David E Gerber, Chenyang Li, Humam Kadara, Linghua Wang, Mark M Davis, John Victor Heymach, Samir M Hanash, Ignacio Wistuba, Steven M Dubinett, Ludmil Alexandrov, Scott Lippman, Avrum Spira, P Andrew Futreal, Alexandre Reuben, Jianjun Zhang
The evolution of lung adenocarcinoma precursors is associated with chromosomal instability and transition from innate to adaptive immune response/evasion. Research square (2024)
Jiefei Han, Yiting Dong, Xiuli Zhu, Alexandre Reuben, Jianjun Zhang, Jiachen Xu, Hua Bai, Jianchun Duan, Rui Wan, Jie Zhao, Jing Bai, Xuefeng Xia, Xin Yi, Chao Cheng, Jie Wang, Zhijie Wang
Assessment of human leukocyte antigen-based neoantigen presentation to determine pan-cancer response to immunotherapy. Nature communications 15 (1) (2024)
Jiefei Han, Yiting Dong, Xiuli Zhu, Alexandre Reuben, Jianjun Zhang, Jiachen Xu, Hua Bai, Jianchun Duan, Rui Wan, Jie Zhao, Jing Bai, Xuefeng Xia, Xin Yi, Chao Cheng, Jie Wang, Zhijie Wang
Assessment of human leukocyte antigen-based neoantigen presentation to determine pan-cancer response to immunotherapy. Nature communications 15 (1) (2024)
Jianjun Zhang, Xin Hu, Bo Zhu, Natalie I Vokes, Junya Fukuoka, Frank Rojas Alvarez, Simon Heeke, Andre Moreira, Luisa Maren Solis Soto, Cara L Haymaker, Vamsidhar Velcheti, Daniel H Sterman, Harvey Pass, Chao Cheng, Jiun-Kae Jack Lee, Jianhua Zhang, Zhubo Wei, Jia Wu, Xiuning Li, Edwin Justin Ostrin, Iakovos Toumazis, Don L Gibbons, Dan Su, Junya Fukuoka, Mara B Antonoff, David E Gerber, Chenyang Li, Humam Kadara, Linghua Wang, Mark M Davis, John Victor Heymach, Samir M Hanash, Ignacio Wistuba, Steven M Dubinett, Ludmil Alexandrov, Scott Lippman, Avrum Spira, P Andrew Futreal, Alexandre Reuben
The evolution of lung adenocarcinoma precursors is associated with chromosomal instability and transition from innate to adaptive immune response/evasion. Research square (2024)
Jiefei Han, Yiting Dong, Xiuli Zhu, Alexandre Reuben, Jianjun Zhang, Jiachen Xu, Hua Bai, Jianchun Duan, Rui Wan, Jie Zhao, Jing Bai, Xuefeng Xia, Xin Yi, Chao Cheng, Jie Wang, Zhijie Wang
Assessment of human leukocyte antigen-based neoantigen presentation to determine pan-cancer response to immunotherapy. Nature communications 15 (1) (2024)
Edwin Roger Parra Cuentes, Jianhua Zhang, Dzifa Yawa Duose, Edgar G Kozlova, Mary W Redman, Hong Chen, Ganiraju C Manyam, Gayatri Kumar, Jianhua Zhang, Xingzhi Song, Rossana Lazcano, Mario L Marques-Piubelli, Caddie Laberiano Fernández, Frank R Rojas Alvarez, Baili Zhang, Len Taing, Aashna Jhaveri, Jacob Geisberg, Jennifer Altreuter, Franziska Michor, James Provencher, Joyce Yu, Ethan Cerami, Radim Moravec, Kasthuri Kannan, Rajyalakshmi Luthra, Gheath Al-Atrash, Hsin-Hui Huang, Hui Xie, Manishkumar Patel, Kai Nie, Jocelyn Harris, Kimberly Argueta, James R Lindsay, Roshni Biswas, Stephen Van Nostrand, Seunghee Kim-Schulze, Jhanelle E Gray, Roy S Herbst, Ignacio I Wistuba, Scott N Gettinger, Karen Kelly, Lyudmila Bazhenova, Sacha Gnjatic, Jiun-Kae Jack Lee, Jianjun Zhang, Cara L Haymaker
Multi-omics Analysis Reveals Immune Features Associated with Immunotherapy Benefit in Patients with Squamous Cell Lung Cancer from Phase III Lung-MAP S1400I Trial. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (8) (2024)
Kang Qin, Kaiwen Wang, Shenduo Li, Lingzhi Hong, Priyadharshini Padmakumar, Rinsurongkawong Waree, Shawna M Hubert, Xiuning Li, Natalie Vokes, Kunal Rai, Ara Vaporciyan, Don L Gibbons, John V Heymach, Jiun-Kae Jack Lee, Scott E Woodman, Caroline Chung, David A Jaffray, Mehmet Altan, Yanyan Lou, Jianjun Zhang
Clinical Benefit from Docetaxel +/- Ramucirumab Is Not Associated with Mutation Status in Metastatic Non-Small-Cell Lung Cancer Patients Who Progressed on Platinum Doublets and Immunotherapy. Cancers 16 (5) (2024)
Edwin Roger Parra Cuentes, Jianhua Zhang, Dzifa Yawa Duose, Edgar G Kozlova, Mary W Redman, Hong Chen, Ganiraju C Manyam, Gayatri Kumar, Jianhua Zhang, Xingzhi Song, Rossana Lazcano, Mario L Marques-Piubelli, Caddie Laberiano Fernández, Frank R Rojas Alvarez, Baili Zhang, Len Taing, Aashna Jhaveri, Jacob Geisberg, Jennifer Altreuter, Franziska Michor, James Provencher, Joyce Yu, Ethan Cerami, Radim Moravec, Kasthuri Kannan, Rajyalakshmi Luthra, Gheath Al-Atrash, Hsin-Hui Huang, Hui Xie, Manishkumar Patel, Kai Nie, Jocelyn Harris, Kimberly Argueta, James R Lindsay, Roshni Biswas, Stephen Van Nostrand, Seunghee Kim-Schulze, Jhanelle E Gray, Roy S Herbst, Ignacio I Wistuba, Scott N Gettinger, Karen Kelly, Lyudmila Bazhenova, Sacha Gnjatic, Jiun-Kae Jack Lee, Jianjun Zhang, Cara L Haymaker
Multi-omics analysis reveals immune features associated with immunotherapy benefit in squamous cell lung cancer patients from Phase III Lung-MAP S1400I trial. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Edwin Roger Parra Cuentes, Jianhua Zhang, Dzifa Yawa Duose, Edgar G Kozlova, Mary W Redman, Hong Chen, Ganiraju C Manyam, Gayatri Kumar, Jianhua Zhang, Xingzhi Song, Rossana Lazcano, Mario L Marques-Piubelli, Caddie Laberiano Fernández, Frank R Rojas Alvarez, Baili Zhang, Len Taing, Aashna Jhaveri, Jacob Geisberg, Jennifer Altreuter, Franziska Michor, James Provencher, Joyce Yu, Ethan Cerami, Radim Moravec, Kasthuri Kannan, Rajyalakshmi Luthra, Gheath Al-Atrash, Hsin-Hui Huang, Hui Xie, Manishkumar Patel, Kai Nie, Jocelyn Harris, Kimberly Argueta, James R Lindsay, Roshni Biswas, Stephen Van Nostrand, Seunghee Kim-Schulze, Jhanelle E Gray, Roy S Herbst, Ignacio I Wistuba, Scott N Gettinger, Karen Kelly, Lyudmila Bazhenova, Sacha Gnjatic, Jiun-Kae Jack Lee, Jianjun Zhang, Cara L Haymaker
Multi-omics Analysis Reveals Immune Features Associated with Immunotherapy Benefit in Patients with Squamous Cell Lung Cancer from Phase III Lung-MAP S1400I Trial. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (8) (2024)
Sheeba J Sujit, Muhammad Aminu, Tatiana V Karpinets, Pingjun Chen, Maliazurina B Saad, Morteza Salehjahromi, John D Boom, Mohamed Qayati, James M George, Haley Allen, Mara B Antonoff, Lingzhi Hong, Xin Hu, Simon Heeke, Hai T Tran, Xiuning Li, Yasir Y Elamin, Mehmet Altan, Natalie I Vokes, Ajay Sheshadri, Julie Lin, Jianhua Zhang, Yang Lu, Carmen Behrens, Myrna C B Godoy, Carol Chia Chia Wu, Joe Y Chang, Caroline Chung, David A Jaffray, Ignacio I Wistuba, Jiun-Kae Jack Lee, Ara A Vaporciyan, Don L Gibbons, John Victor Heymach, Jianjun Zhang, Cascone Tina, Jia Wu
Enhancing NSCLC recurrence prediction with PET/CT habitat imaging, ctDNA, and integrative radiogenomics-blood insights. Nature communications 15 (1) (2024)
Sheeba J Sujit, Muhammad Aminu, Tatiana V Karpinets, Pingjun Chen, Maliazurina B Saad, Morteza Salehjahromi, John D Boom, Mohamed Qayati, James M George, Haley Allen, Mara B Antonoff, Lingzhi Hong, Xin Hu, Simon Heeke, Hai T Tran, Xiuning Li, Yasir Y Elamin, Mehmet Altan, Natalie I Vokes, Ajay Sheshadri, Julie Lin, Jianhua Zhang, Yang Lu, Carmen Behrens, Myrna C B Godoy, Carol Chia Chia Wu, Joe Y Chang, Caroline Chung, David A Jaffray, Ignacio I Wistuba, Jiun-Kae Jack Lee, Ara A Vaporciyan, Don L Gibbons, John Victor Heymach, Jianjun Zhang, Cascone Tina, Jia Wu
Enhancing NSCLC recurrence prediction with PET/CT habitat imaging, ctDNA, and integrative radiogenomics-blood insights. Nature communications 15 (1) (2024)
Sheeba J Sujit, Muhammad Aminu, Tatiana V Karpinets, Pingjun Chen, Maliazurina B Saad, Morteza Salehjahromi, John D Boom, Mohamed Qayati, James M George, Haley Allen, Mara B Antonoff, Lingzhi Hong, Xin Hu, Simon Heeke, Hai T Tran, Xiuning Li, Yasir Y Elamin, Mehmet Altan, Natalie I Vokes, Ajay Sheshadri, Julie Lin, Jianhua Zhang, Yang Lu, Carmen Behrens, Myrna C B Godoy, Carol Chia Chia Wu, Joe Y Chang, Caroline Chung, David A Jaffray, Ignacio I Wistuba, Jiun-Kae Jack Lee, Ara A Vaporciyan, Don L Gibbons, John Victor Heymach, Jianjun Zhang, Cascone Tina, Jia Wu
Enhancing NSCLC recurrence prediction with PET/CT habitat imaging, ctDNA, and integrative radiogenomics-blood insights. Nature communications 15 (1) (2024)
Sheeba J Sujit, Muhammad Aminu, Tatiana V Karpinets, Pingjun Chen, Maliazurina B Saad, Morteza Salehjahromi, John D Boom, Mohamed Qayati, James M George, Haley Allen, Mara B Antonoff, Lingzhi Hong, Xin Hu, Simon Heeke, Hai T Tran, Xiuning Li, Yasir Y Elamin, Mehmet Altan, Natalie I Vokes, Ajay Sheshadri, Julie Lin, Jianhua Zhang, Yang Lu, Carmen Behrens, Myrna C B Godoy, Carol Chia Chia Wu, Joe Y Chang, Caroline Chung, David A Jaffray, Ignacio I Wistuba, Jiun-Kae Jack Lee, Ara A Vaporciyan, Don L Gibbons, John Victor Heymach, Jianjun Zhang, Cascone Tina, Jia Wu
Enhancing NSCLC recurrence prediction with PET/CT habitat imaging, ctDNA, and integrative radiogenomics-blood insights. Nature communications 15 (1) (2024)
Haniel A Araujo, Ximo Pechuan, Teng Zhou, Minh Truong Do, Xin Hu, Frank R Rojas Alvarez, Maria E Salvatierra, Heladio P Ibarguen, Richard Lee, Rashi Raghulan, Harshit Shah, Mariela A Moreno Ayala, Kevin Chen, Nataliya Tovbis Shifrin, Shuhong Wu, Luisa Maren Solis Soto, Marcelo Vailati Negrão, Don L Gibbons, David S Hong, Jack A Roth, John Victor Heymach, Jianjun Zhang, Jingjing Jiang, Mallika Singh, Jacqueline A M Smith, Elsa Quintana, Ferdinandos Skoulidis
Mechanisms of response and tolerance to active RAS inhibition in KRAS-mutant NSCLC. Cancer discovery (2024)
Sheeba J Sujit, Muhammad Aminu, Tatiana V Karpinets, Pingjun Chen, Maliazurina B Saad, Morteza Salehjahromi, John D Boom, Mohamed Qayati, James M George, Haley Allen, Mara B Antonoff, Lingzhi Hong, Xin Hu, Simon Heeke, Hai T Tran, Xiuning Li, Yasir Y Elamin, Mehmet Altan, Natalie I Vokes, Ajay Sheshadri, Julie Lin, Jianhua Zhang, Yang Lu, Carmen Behrens, Myrna C B Godoy, Carol Chia Chia Wu, Joe Y Chang, Caroline Chung, David A Jaffray, Ignacio I Wistuba, Jiun-Kae Jack Lee, Ara A Vaporciyan, Don L Gibbons, John Victor Heymach, Jianjun Zhang, Cascone Tina, Jia Wu
Enhancing NSCLC recurrence prediction with PET/CT habitat imaging, ctDNA, and integrative radiogenomics-blood insights. Nature communications 15 (1) (2024)
Jiefei Han, Yiting Dong, Xiuli Zhu, Alexandre Reuben, Jianjun Zhang, Jiachen Xu, Hua Bai, Jianchun Duan, Rui Wan, Jie Zhao, Jing Bai, Xuefeng Xia, Xin Yi, Chao Cheng, Jie Wang, Zhijie Wang
Assessment of human leukocyte antigen-based neoantigen presentation to determine pan-cancer response to immunotherapy. Nature communications 15 (1) (2024)
Kang Qin, Kaiwen Wang, Shenduo Li, Lingzhi Hong, Priyadharshini Padmakumar, Rinsurongkawong Waree, Shawna M Hubert, Xiuning Li, Natalie Vokes, Kunal Rai, Ara Vaporciyan, Don L Gibbons, John V Heymach, Jiun-Kae Jack Lee, Scott E Woodman, Caroline Chung, David A Jaffray, Mehmet Altan, Yanyan Lou, Jianjun Zhang
Clinical Benefit from Docetaxel +/- Ramucirumab Is Not Associated with Mutation Status in Metastatic Non-Small-Cell Lung Cancer Patients Who Progressed on Platinum Doublets and Immunotherapy. Cancers 16 (5) (2024)
Xin Hu, Bo Zhu, Natalie I Vokes, Junya Fujimoto, Frank R Rojas Alvarez, Simon Heeke, Andre L Moreira, Luisa Maren Solis Soto, Cara L Haymaker, Vamsidhar Velcheti, Daniel H Sterman, Harvey I Pass, Chao Cheng, Jiun-Kae Jack Lee, Jianhua Zhang, Zhubo Wei, Jia Wu, Xiuning Li, Edwin Justin Ostrin, Iakovos Toumazis, Don L Gibbons, Dan Su, Junya Fukuoka, Mara B Antonoff, David E Gerber, Chenyang Li, Humam Kadara, Linghua Wang, Mark M Davis, John Victor Heymach, Samir M Hanash, Ignacio Wistuba, Steven M Dubinett, Ludmil Alexandrov, Scott Lippman, Avrum Spira, P Andrew Futreal, Alexandre Reuben, Jianjun Zhang
The evolution of lung adenocarcinoma precursors is associated with chromosomal instability and transition from innate to adaptive immune response/evasion. Research square (2024)
Muhammad Aminu, Lingzhi Hong, Natalie I Vokes, Stephanie Tzouanas Schmidt, Maliazurina Saad, Bo Zhu, Xiuning Li, Cascone Tina, Ajay Sheshadri, Bo Wang, David Jaffray, P Andrew Futreal, Jiun-Kae Jack Lee, Lauren Averett Byers, Don L Gibbons, John Victor Heymach, Ken Chen, Chao Cheng, Jianjun Zhang, Jia Wu
Joint multi-omics discriminant analysis with consistent representation learning using PANDA. Research square (2024)
Muhammad Aminu, Lingzhi Hong, Natalie I Vokes, Stephanie Tzouanas Schmidt, Maliazurina Saad, Bo Zhu, Xiuning Li, Cascone Tina, Ajay Sheshadri, Bo Wang, David Jaffray, P Andrew Futreal, Jiun-Kae Jack Lee, Lauren Averett Byers, Don L Gibbons, John Victor Heymach, Ken Chen, Chao Cheng, Jianjun Zhang, Jia Wu
Joint multi-omics discriminant analysis with consistent representation learning using PANDA. Research square (2024)
Jiefei Han, Yiting Dong, Xiuli Zhu, Alexandre Reuben, Jianjun Zhang, Jiachen Xu, Hua Bai, Jianchun Duan, Rui Wan, Jie Zhao, Jing Bai, Xuefeng Xia, Xin Yi, Chao Cheng, Jie Wang, Zhijie Wang
Assessment of human leukocyte antigen-based neoantigen presentation to determine pan-cancer response to immunotherapy. Nature communications 15 (1) (2024)
Lingzhi Hong, Muhammad Aminu, Shenduo Li, Xuetao Lu, Milena Petranovic, Maliazurina B Saad, Pingjun Chen, Kang Qin, Susan Varghese, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Amy Spelman, Yasir Y Elamin, Marcelo Vailati Negrão, Ferdinandos Skoulidis, Carl M Gay, Cascone Tina, Saumil J Gandhi, Steven Hsesheng Lin, Percy P Lee, Brett W Carter, Carol Chia Chia Wu, Mara B Antonoff, Boris Sepesi, Jeff Lewis, Don L Gibbons, Ara A Vaporciyan, Xiuning Li, Jiun-Kae Jack Lee, Sinchita Roy-Chowdhuri, Mark J Routbort, Justin F Gainor, John Victor Heymach, Yanyan Lou, Jia Wu, Jianjun Zhang, Natalie I Vokes
Efficacy and clinicogenomic correlates of response to immune checkpoint inhibitors alone or with chemotherapy in non-small cell lung cancer. Nature communications 14 (1) (2023)
Brian Sandeep De, Ahsan S Farooqi, Kyle G Mitchell, Ethan Bernard Ludmir, Jeff Lewis, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Jiun-Kae Jack Lee, Stephen G Swisher, Don L Gibbons, Jianjun Zhang, Xiuning Li, Yasir Y Elamin, Daniel R Gomez, Matthew S Ning, Steven Hsesheng Lin, Zhongxing Liao, Joe Y Chang, Ara A Vaporciyan, John Victor Heymach, Mara B Antonoff, Saumil J Gandhi
Benchmarking Outcomes for Molecularly Characterized Synchronous Oligometastatic Non-Small-Cell Lung Cancer Reveals EGFR Mutations to Be Associated With Longer Overall Survival. JCO precision oncology 7 (2023)
Lingzhi Hong, Muhammad Aminu, Shenduo Li, Xuetao Lu, Milena Petranovic, Maliazurina B Saad, Pingjun Chen, Kang Qin, Susan Varghese, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Amy Spelman, Yasir Y Elamin, Marcelo Vailati Negrão, Ferdinandos Skoulidis, Carl M Gay, Cascone Tina, Saumil J Gandhi, Steven Hsesheng Lin, Percy P Lee, Brett W Carter, Carol Chia Chia Wu, Mara B Antonoff, Boris Sepesi, Jeff Lewis, Don L Gibbons, Ara A Vaporciyan, Xiuning Li, Jiun-Kae Jack Lee, Sinchita Roy-Chowdhuri, Mark J Routbort, Justin F Gainor, John Victor Heymach, Yanyan Lou, Jia Wu, Jianjun Zhang, Natalie I Vokes
Efficacy and clinicogenomic correlates of response to immune checkpoint inhibitors alone or with chemotherapy in non-small cell lung cancer. Nature communications 14 (1) (2023)
Rohit Thummalapalli, Biagio Ricciuti, Chaitanya Bandlamudi, Daniel M Muldoon, Hira A Rizvi, Arielle Elkrief, Jia Luo, Joao M Victor Alessi, Federica Pecci, Giuseppe Lamberti, Alessandro Di Federico, Lingzhi Hong, Jianjun Zhang, John Victor Heymach, Don L Gibbons, Andrew J Plodkowski, Vignesh Ravichandran, Mark T A Donoghue, Chad M Vanderbilt, Marc Ladanyi, Charles M Rudin, Mark G Kris, Gregory J Riely, Jamie E Chaft, Matthew D Hellmann, Natalie I Vokes, Mark M Awad, Adam J Schoenfeld
Clinical and molecular features of long-term response to immune checkpoint inhibitors in patients with advanced non-small cell lung cancer. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Kang Qin, Lingzhi Hong, Jianjun Zhang, Xiuning Le
MET Amplification as a Resistance Driver to TKI Therapies in Lung Cancer: Clinical Challenges and Opportunities. Cancers 15 (3) (2023)
Qasem Al-Tashi, Maliazurina B Saad, Amgad Muneer, Rizwan Qureshi, Seyedali Mirjalili, Ajay Sheshadri, Xiuning Le, Natalie I Vokes, Jianjun Zhang, Jia Wu
Machine Learning Models for the Identification of Prognostic and Predictive Cancer Biomarkers: A Systematic Review. International journal of molecular sciences 24 (9) (2023)
Songhui Diao, Pingjun Chen, Eman Showkatian, Rukhmini Bandyopadhyay, Frank R Rojas, Bo Zhu, Lingzhi Hong, Muhammad Aminu, Maliazurina B Saad, Morteza Salehjahromi, Amgad Muneer, Sheeba J Sujit, Carmen Behrens, Don L Gibbons, John V Heymach, Neda Kalhor, Ignacio I Wistuba, Luisa Maren Solis Soto, Jianjun Zhang, Wenjian Qin, Jia Wu
Automated Cellular-Level Dual Global Fusion of Whole-Slide Imaging for Lung Adenocarcinoma Prognosis. Cancers 15 (19) (2023)
Lingzhi Hong, Muhammad Aminu, Shenduo Li, Xuetao Lu, Milena Petranovic, Maliazurina B Saad, Pingjun Chen, Kang Qin, Susan Varghese, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Amy Spelman, Yasir Y Elamin, Marcelo Vailati Negrão, Ferdinandos Skoulidis, Carl M Gay, Cascone Tina, Saumil J Gandhi, Steven Hsesheng Lin, Percy P Lee, Brett W Carter, Carol Chia Chia Wu, Mara B Antonoff, Boris Sepesi, Jeff Lewis, Don L Gibbons, Ara A Vaporciyan, Xiuning Li, Jiun-Kae Jack Lee, Sinchita Roy-Chowdhuri, Mark J Routbort, Justin F Gainor, John Victor Heymach, Yanyan Lou, Jia Wu, Jianjun Zhang, Natalie I Vokes
Efficacy and clinicogenomic correlates of response to immune checkpoint inhibitors alone or with chemotherapy in non-small cell lung cancer. Nature communications 14 (1) (2023)
Natalie I Vokes, Ana Galan Cobo, Margarita Fernandez-Chas, David P Molkentine, Santiago Treviño, Vitaly Druker, Yu Qian, Sonia A Patel, Stephanie Tzouanas Schmidt, Lingzhi Hong, Jeff Lewis, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Jiun-Kae Jack Lee, Marcelo Vailati Negrão, Don L Gibbons, Ara A Vaporciyan, Xiuning Li, Jia Wu, Jianjun Zhang, Una Rigney, Sonia Iyer, Emma Dean, John Victor Heymach
ATM mutations associate with distinct co-mutational patterns and therapeutic vulnerabilities in NSCLC. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Brian Sandeep De, Ahsan S Farooqi, Kyle G Mitchell, Ethan Bernard Ludmir, Jeff Lewis, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Jiun-Kae Jack Lee, Stephen G Swisher, Don L Gibbons, Jianjun Zhang, Xiuning Li, Yasir Y Elamin, Daniel R Gomez, Matthew S Ning, Steven Hsesheng Lin, Zhongxing Liao, Joe Y Chang, Ara A Vaporciyan, John Victor Heymach, Mara B Antonoff, Saumil J Gandhi
Benchmarking Outcomes for Molecularly Characterized Synchronous Oligometastatic Non-Small-Cell Lung Cancer Reveals EGFR Mutations to Be Associated With Longer Overall Survival. JCO precision oncology 7 (2023)
Ali Silver, Cheryl Ho, Qian Ye, Jianjun Zhang, Ian Janzen, Jessica Li, Montgomery Martin, Lang Wu, Ying Wang, Stephen Lam, Calum MacAulay, Barbara L Melosky, Ren Yuan
Prediction of Disease Progression to Upfront Pembrolizumab Monotherapy in Advanced Non-Small-Cell Lung Cancer with High PD-L1 Expression Using Baseline CT Disease Quantification and Smoking Pack Years. Current oncology (Toronto, Ont.) 30 (6) (2023)
Cascone Tina, Cheuk H Leung, Annikka Weissferdt, Apar Pataer, Brett W Carter, Myrna C B Godoy, Hope Feldman, William N William, Yuanxin Xi, Sreyashi Basu, Jing Jing Sun, Shalini S Yadav, Frank R Rojas Alvarez, Younghee Lee, Aditya K Mishra, Lili Chen, Monika Pradhan, Haiping Guo, Ansam Sinjab, Nicolas Zhou, Marcelo Vailati Negrão, Xiuning Li, Carl M Gay, Anne S Tsao, Lauren Averett Byers, Mehmet Altan, Bonnie S Glisson, Frank V Fossella, Yasir Y Elamin, George Blumenschein, Jianjun Zhang, Ferdinandos Skoulidis, Jia Wu, Reza J Mehran, David C Rice, Garrett L Walsh, Wayne L Hofstetter, Ravi Rajaram, Mara B Antonoff, Junya Fujimoto, Luisa Maren Solis Soto, Edwin Roger Parra Cuentes, Cara L Haymaker, Ignacio I Wistuba, Stephen G Swisher, Ara A Vaporciyan, Heather Y Lin, Jing Wang, Don L Gibbons, Jiun-Kae Jack Lee, Nadim J Ajami, Jennifer A Wargo, James P Allison, Padmanee Sharma, Humam Kadara, John Victor Heymach, Boris Sepesi
Neoadjuvant chemotherapy plus nivolumab with or without ipilimumab in operable non-small cell lung cancer: the phase 2 platform NEOSTAR trial. Nature medicine 29 (3) (2023)
Ali Silver, Cheryl Ho, Qian Ye, Jianjun Zhang, Ian Janzen, Jessica Li, Montgomery Martin, Lang Wu, Ying Wang, Stephen Lam, Calum MacAulay, Barbara L Melosky, Ren Yuan
Prediction of Disease Progression to Upfront Pembrolizumab Monotherapy in Advanced Non-Small-Cell Lung Cancer with High PD-L1 Expression Using Baseline CT Disease Quantification and Smoking Pack Years. Current oncology (Toronto, Ont.) 30 (6) (2023)
Lingzhi Hong, Muhammad Aminu, Shenduo Li, Xuetao Lu, Milena Petranovic, Maliazurina B Saad, Pingjun Chen, Kang Qin, Susan Varghese, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Amy Spelman, Yasir Y Elamin, Marcelo Vailati Negrão, Ferdinandos Skoulidis, Carl M Gay, Cascone Tina, Saumil J Gandhi, Steven Hsesheng Lin, Percy P Lee, Brett W Carter, Carol Chia Chia Wu, Mara B Antonoff, Boris Sepesi, Jeff Lewis, Don L Gibbons, Ara A Vaporciyan, Xiuning Li, Jiun-Kae Jack Lee, Sinchita Roy-Chowdhuri, Mark J Routbort, Justin F Gainor, John Victor Heymach, Yanyan Lou, Jia Wu, Jianjun Zhang, Natalie I Vokes
Efficacy and clinicogenomic correlates of response to immune checkpoint inhibitors alone or with chemotherapy in non-small cell lung cancer. Nature communications 14 (1) (2023)
Cascone Tina, Cheuk H Leung, Annikka Weissferdt, Apar Pataer, Brett W Carter, Myrna C B Godoy, Hope Feldman, William N William, Yuanxin Xi, Sreyashi Basu, Jing Jing Sun, Shalini S Yadav, Frank R Rojas Alvarez, Younghee Lee, Aditya K Mishra, Lili Chen, Monika Pradhan, Haiping Guo, Ansam Sinjab, Nicolas Zhou, Marcelo Vailati Negrão, Xiuning Li, Carl M Gay, Anne S Tsao, Lauren Averett Byers, Mehmet Altan, Bonnie S Glisson, Frank V Fossella, Yasir Y Elamin, George Blumenschein, Jianjun Zhang, Ferdinandos Skoulidis, Jia Wu, Reza J Mehran, David C Rice, Garrett L Walsh, Wayne L Hofstetter, Ravi Rajaram, Mara B Antonoff, Junya Fujimoto, Luisa Maren Solis Soto, Edwin Roger Parra Cuentes, Cara L Haymaker, Ignacio I Wistuba, Stephen G Swisher, Ara A Vaporciyan, Heather Y Lin, Jing Wang, Don L Gibbons, Jiun-Kae Jack Lee, Nadim J Ajami, Jennifer A Wargo, James P Allison, Padmanee Sharma, Humam Kadara, John Victor Heymach, Boris Sepesi
Neoadjuvant chemotherapy plus nivolumab with or without ipilimumab in operable non-small cell lung cancer: the phase 2 platform NEOSTAR trial. Nature medicine (2023)
Xiuning Li, Yasir Y Elamin, Jianjun Zhang
New Actions on Actionable Mutations in Lung Cancers. Cancers 15 (11) (2023)
Ali Silver, Cheryl Ho, Qian Ye, Jianjun Zhang, Ian Janzen, Jessica Li, Montgomery Martin, Lang Wu, Ying Wang, Stephen Lam, Calum MacAulay, Barbara L Melosky, Ren Yuan
Prediction of Disease Progression to Upfront Pembrolizumab Monotherapy in Advanced Non-Small-Cell Lung Cancer with High PD-L1 Expression Using Baseline CT Disease Quantification and Smoking Pack Years. Current oncology (Toronto, Ont.) 30 (6) (2023)
Kang Qin, Lingzhi Hong, Jianjun Zhang, Xiuning Le
MET Amplification as a Resistance Driver to TKI Therapies in Lung Cancer: Clinical Challenges and Opportunities. Cancers 15 (3) (2023)
Lingzhi Hong, Muhammad Aminu, Shenduo Li, Xuetao Lu, Milena Petranovic, Maliazurina B Saad, Pingjun Chen, Kang Qin, Susan Varghese, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Amy Spelman, Yasir Y Elamin, Marcelo Vailati Negrão, Ferdinandos Skoulidis, Carl M Gay, Cascone Tina, Saumil J Gandhi, Steven Hsesheng Lin, Percy P Lee, Brett W Carter, Carol Chia Chia Wu, Mara B Antonoff, Boris Sepesi, Jeff Lewis, Don L Gibbons, Ara A Vaporciyan, Xiuning Li, Jiun-Kae Jack Lee, Sinchita Roy-Chowdhuri, Mark J Routbort, Justin F Gainor, John Victor Heymach, Yanyan Lou, Jia Wu, Jianjun Zhang, Natalie I Vokes
Efficacy and clinicogenomic correlates of response to immune checkpoint inhibitors alone or with chemotherapy in non-small cell lung cancer. Nature communications 14 (1) (2023)
Ali Silver, Cheryl Ho, Qian Ye, Jianjun Zhang, Ian Janzen, Jessica Li, Montgomery Martin, Lang Wu, Ying Wang, Stephen Lam, Calum MacAulay, Barbara L Melosky, Ren Yuan
Prediction of Disease Progression to Upfront Pembrolizumab Monotherapy in Advanced Non-Small-Cell Lung Cancer with High PD-L1 Expression Using Baseline CT Disease Quantification and Smoking Pack Years. Current oncology (Toronto, Ont.) 30 (6) (2023)
Cascone Tina, Cheuk H Leung, Annikka Weissferdt, Apar Pataer, Brett W Carter, Myrna C B Godoy, Hope Feldman, William N William, Yuanxin Xi, Sreyashi Basu, Jing Jing Sun, Shalini S Yadav, Frank R Rojas Alvarez, Younghee Lee, Aditya K Mishra, Lili Chen, Monika Pradhan, Haiping Guo, Ansam Sinjab, Nicolas Zhou, Marcelo Vailati Negrão, Xiuning Li, Carl M Gay, Anne S Tsao, Lauren Averett Byers, Mehmet Altan, Bonnie S Glisson, Frank V Fossella, Yasir Y Elamin, George Blumenschein, Jianjun Zhang, Ferdinandos Skoulidis, Jia Wu, Reza J Mehran, David C Rice, Garrett L Walsh, Wayne L Hofstetter, Ravi Rajaram, Mara B Antonoff, Junya Fujimoto, Luisa Maren Solis Soto, Edwin Roger Parra Cuentes, Cara L Haymaker, Ignacio I Wistuba, Stephen G Swisher, Ara A Vaporciyan, Heather Y Lin, Jing Wang, Don L Gibbons, Jiun-Kae Jack Lee, Nadim J Ajami, Jennifer A Wargo, James P Allison, Padmanee Sharma, Humam Kadara, John Victor Heymach, Boris Sepesi
Neoadjuvant chemotherapy plus nivolumab with or without ipilimumab in operable non-small cell lung cancer: the phase 2 platform NEOSTAR trial. Nature medicine 29 (3) (2023)
Marcelo Vailati Negrão, Haniel A Araujo, Giuseppe Lamberti, Alissa J Cooper, Neal S Akhave, Teng Zhou, Lukas Delasos, J Kevin Hicks, Mihaela Aldea, Gabriele Minuti, Jacobi Hines, Jacqueline V Aredo, Michael J Dennis, Turja Chakrabarti, Susan C Scott, Paolo Bironzo, Matthias Scheffler, Petros Christopoulos, Albrecht Stenzinger, Jonathan W Riess, So Yeon Kim, Sarah B Goldberg, Mingjia Li, Qi Wang, Yun Qing, Ying Ni, Minh Truong Do, Richard Lee, Biagio Ricciuti, Joao M Victor Alessi, Jing Wang, Blerina Resuli, Lorenza Landi, Shu-Chi Tseng, Mizuki Nishino, Subba R Digumarthy, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Ara A Vaporciyan, George R Blumenschein, Jianjun Zhang, Dwight H Owen, Collin M Blakely, Giannis S Mountzios, Catherine A Shu, Christine M Bestvina, Marina-Chiara Garassino, Kristen A Marrone, Jhanelle E Gray, Sandip Pravin Patel, Amy L Cummings, Heather A Wakelee, Juergen Wolf, Giorgio Vittorio Scagliotti, Federico Cappuzzo, Fabrice Barlesi, Pradnya D Patil, Leylah Drusbosky, Don L Gibbons, Funda Meric-Bernstam, Jiun-Kae Jack Lee, John Victor Heymach, David S Hong, Rebecca S Heist, Mark M Awad, Ferdinandos Skoulidis
Co-mutations and KRAS G12C inhibitor efficacy in advanced NSCLC. Cancer discovery (2023)
Qasem Al-Tashi, Maliazurina B Saad, Amgad Muneer, Rizwan Qureshi, Seyedali Mirjalili, Ajay Sheshadri, Xiuning Le, Natalie I Vokes, Jianjun Zhang, Jia Wu
Machine Learning Models for the Identification of Prognostic and Predictive Cancer Biomarkers: A Systematic Review. International journal of molecular sciences 24 (9) (2023)
Guan-Yu Xiao, Xiaochao Tan, Bertha L Rodriguez, Don L Gibbons, Shike Wang, Chao Wu, Xin Liu, Jiang Yu, Mayra E Vasquez, Hai T Tran, Jun Xu, William K Russell, Cara L Haymaker, Younghee Lee, Jianjun Zhang, Luisa Solis, Ignacio I Wistuba, Jonathan M Kurie
EMT activates exocytotic Rabs to coordinate invasion and immunosuppression in lung cancer. Proceedings of the National Academy of Sciences of the United States of America 120 (28) (2023)
Brian Sandeep De, Ahsan S Farooqi, Kyle G Mitchell, Ethan Bernard Ludmir, Jeff Lewis, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Jiun-Kae Jack Lee, Stephen G Swisher, Don L Gibbons, Jianjun Zhang, Xiuning Li, Yasir Y Elamin, Daniel R Gomez, Matthew S Ning, Steven Hsesheng Lin, Zhongxing Liao, Joe Y Chang, Ara A Vaporciyan, John Victor Heymach, Mara B Antonoff, Saumil J Gandhi
Benchmarking Outcomes for Molecularly Characterized Synchronous Oligometastatic Non-Small-Cell Lung Cancer Reveals EGFR Mutations to Be Associated With Longer Overall Survival. JCO precision oncology 7 (2023)
Cascone Tina, Cheuk H Leung, Annikka Weissferdt, Apar Pataer, Brett W Carter, Myrna C B Godoy, Hope Feldman, William N William, Yuanxin Xi, Sreyashi Basu, Jing Jing Sun, Shalini S Yadav, Frank R Rojas Alvarez, Younghee Lee, Aditya K Mishra, Lili Chen, Monika Pradhan, Haiping Guo, Ansam Sinjab, Nicolas Zhou, Marcelo Vailati Negrão, Xiuning Li, Carl M Gay, Anne S Tsao, Lauren Averett Byers, Mehmet Altan, Bonnie S Glisson, Frank V Fossella, Yasir Y Elamin, George Blumenschein, Jianjun Zhang, Ferdinandos Skoulidis, Jia Wu, Reza J Mehran, David C Rice, Garrett L Walsh, Wayne L Hofstetter, Ravi Rajaram, Mara B Antonoff, Junya Fujimoto, Luisa Maren Solis Soto, Edwin Roger Parra Cuentes, Cara L Haymaker, Ignacio I Wistuba, Stephen G Swisher, Ara A Vaporciyan, Heather Y Lin, Jing Wang, Don L Gibbons, Jiun-Kae Jack Lee, Nadim J Ajami, Jennifer A Wargo, James P Allison, Padmanee Sharma, Humam Kadara, John Victor Heymach, Boris Sepesi
Neoadjuvant chemotherapy plus nivolumab with or without ipilimumab in operable non-small cell lung cancer: the phase 2 platform NEOSTAR trial. Nature medicine 29 (3) (2023)
Tianshi Lu, Seongoh Park, Yi Han, Yunguan Wang, Shawna Marie Hubert, P Andrew Futreal, Ignacio Wistuba, John Victor Heymach, Alexandre Reuben, Jianjun Zhang, Tao Wang
Netie: inferring the evolution of neoantigen-T cell interactions in tumors. Nature methods 19 (11) (2022)
Meredith L Frank, Kaylene Lu, Can Erdogan, Yi Han, Jian Hu, Tao Wang, John Victor Heymach, Jianjun Zhang, Alexandre Reuben
T cell receptor repertoire sequencing in the era of cancer immunotherapy. Clinical cancer research : an official journal of the American Association for Cancer Research (2022)
Muhammad Aminu, Divya Yadav, Lingzhi Hong, Elliana Young, Paul Edelkamp, Maliazurina Saad, Morteza Salehjahromi, Pingjun Chen, Sheeba J Sujit, Melissa M Chen, Bradley Sabloff, Gregory Gladish, Patricia M de Groot, Myrna C B Godoy, Tina Cascone, Natalie I Vokes, Jianjun Zhang, Kristy K Brock, Naval Daver, Scott E Woodman, Hussein A Tawbi, Ajay Sheshadri, Jiun-Kae Jack Lee, David A Jaffray, null D Code Team, Carol C Wu, Caroline Chung, Jia Wu
Habitat Imaging Biomarkers for Diagnosis and Prognosis in Cancer Patients Infected with COVID-19. Cancers 15 (1) (2022)
Marcelo Vailati Negrão, Ferdinandos Skoulidis, Meagan Montesion, Katja Schulze, Ilze Bara, Vincent Shen, Hao Xu, Sylvia Hu, Dawen Sui, Yasir Y Elamin, Xiuning Le, Michael E Goldberg, Karthikeyan Murugesan, Chang-Jiun Wu, Jianhua Zhang, David S Barreto, Jacqulyne P Robichaux, Alexandre Reuben, Tina Cascone, Carl M Gay, Kyle Gregory Mitchell, Lingzhi Hong, Waree Rinsurongkawong, Jack A Roth, Stephen G Swisher, Jiun-Kae Jack Lee, Anne Tsao, Vassiliki Papadimitrakopoulou, Don L Gibbons, Bonnie S Glisson, Gaurav Singal, Vincent A Miller, Brian Alexander, Garrett Frampton, Lee A Albacker, David Shames, Jianjun Zhang, John V Heymach
Oncogene-specific differences in tumor mutational burden, PD-L1 expression, and outcomes from immunotherapy in non-small cell lung cancer. Journal for immunotherapy of cancer 9 (8) (2022)
Lingzhi Hong, Whitney E Lewis, Monique Nilsson, Sonia A Patel, Susan Varghese, Melvin J Rivera, Robyn R Du, Pingjun Chen, Haley N Kemp, Waree Rinsurongkawong, Simon Heeke, Amy R Spelman, Yasir Y Elamin, Marcelo Vailati Negrão, Boris Sepesi, Don L Gibbons, J Jack Lee, Jia Wu, Natalie I Vokes, John V Heymach, Jianjun Zhang, Xiuning Le
Limited Benefit from the Addition of Immunotherapy to Chemotherapy in TKI-Refractory EGFR-Mutant Lung Adenocarcinoma. Cancers 14 (14) (2022)
Bingnan Zhang, C Allison Stewart, Qi Wang, Robert J Cardnell, Pedro Rocha, Junya Fujimoto, Luisa M Solis Soto, Runsheng Wang, Veronica Novegil, Peter Ansell, Lei He, Luisa Fernandez, Adam Jendrisak, Cole Gilbertson, Joseph D Schonhoft, Jiyun Byun, Joshua Jones, Amanda K L Anderson, Ana Aparicio, Hai Tran, Marcelo V Negrao, Jianjun Zhang, Wei-Lien Wang, Ignacio I Wistuba, Jing Wang, Rick Wenstrup, Lauren Averett Byers, Carl M Gay
Dynamic expression of Schlafen 11 (SLFN11) in circulating tumour cells as a liquid biomarker in small cell lung cancer. British journal of cancer 127 (3) (2022)
Muhammad Aminu, Divya Yadav, Lingzhi Hong, Elliana Young, Paul Edelkamp, Maliazurina Saad, Morteza Salehjahromi, Pingjun Chen, Sheeba J Sujit, Melissa M Chen, Bradley Sabloff, Gregory Gladish, Patricia M de Groot, Myrna C B Godoy, Tina Cascone, Natalie I Vokes, Jianjun Zhang, Kristy K Brock, Naval Daver, Scott E Woodman, Hussein A Tawbi, Ajay Sheshadri, Jiun-Kae Jack Lee, David A Jaffray, null D Code Team, Carol C Wu, Caroline Chung, Jia Wu
Habitat Imaging Biomarkers for Diagnosis and Prognosis in Cancer Patients Infected with COVID-19. Cancers 15 (1) (2022)
Muhammad Aminu, Divya Yadav, Lingzhi Hong, Elliana Young, Paul Edelkamp, Maliazurina Saad, Morteza Salehjahromi, Pingjun Chen, Sheeba J Sujit, Melissa M Chen, Bradley Sabloff, Gregory Gladish, Patricia M de Groot, Myrna C B Godoy, Tina Cascone, Natalie I Vokes, Jianjun Zhang, Kristy K Brock, Naval Daver, Scott E Woodman, Hussein A Tawbi, Ajay Sheshadri, Jiun-Kae Jack Lee, David A Jaffray, null D Code Team, Carol C Wu, Caroline Chung, Jia Wu
Habitat Imaging Biomarkers for Diagnosis and Prognosis in Cancer Patients Infected with COVID-19. Cancers 15 (1) (2022)
Stephanie Tzouanas Schmidt, Neal Akhave, Ryan E Knightly, Alexandre Reuben, Natalie I Vokes, Jianhua Zhang, Jun Li, Junya Fujimoto, Lauren Averett Byers, Beatriz Sanchez-Espiridion, Lixia Diao, Jing Wang, Lorenzo Federico, Marie-Andree Forget, Daniel J McGrail, Annikka Weissferdt, Shiaw-Yih Lin, Younghee Lee, Erika Suzuki, Jeffrey J Kovacs, Carmen Behrens, Ignacio I Wistuba, Andrew Futreal, Ara Vaporciyan, Boris Sepesi, John Victor Heymach, Chantale Bernatchez, Cara L Haymaker, Cascone Tina, Jianjun Zhang, Christopher A Bristow, Timothy P Heffernan, Marcelo V Negrao, Don L Gibbons, null null
Shared Nearest Neighbors Approach and Interactive Browser for Network Analysis of a Comprehensive Non-Small-Cell Lung Cancer Data Set. JCO clinical cancer informatics 6 (2022)
Yanhua Tian, Qingqing Li, Zhenlin Yang, Shu Zhang, Jiachen Xu, Zhijie Wang, Hua Bai, Jianchun Duan, Bo Zheng, Wen Li, Yueli Cui, Xin Wang, Rui Wan, Kailun Fei, Jia Zhong, Shugeng Gao, Jie He, Carl M Gay, Jianjun Zhang, Jie Wang, Fuchou Tang
Single-cell transcriptomic profiling reveals the tumor heterogeneity of small-cell lung cancer. Signal transduction and targeted therapy 7 (1) (2022)
Yiping Tian, Qian Lai, Yuansi Zheng, Lisha Ying, Canming Wang, Jiaoyue Jin, Minran Huang, Yingxue Wu, Huizhang Li, Jianjun Zhang, Dan Su
Oncogenic Alterations in Histologically Negative Lymph Nodes Are Associated with Prognosis of Patients with Stage I Lung Adenocarcinoma. Cancers 14 (3) (2022)
Parin Shah, Marie-Andrée Forget, Meredith L Frank, Peixin Jiang, Donastas Sakellariou-Thompson, Lorenzo Federico, Roohussaba Khairullah, Chantal Alexia Neutzler, Ignacio Wistuba, Chi-Wan B Chow, Yan Long, Junya Fujimoto, Shiaw-Yih Lin, Anirban Maitra, Marcelo Vailati Negrão, Kyle Gregory Mitchell, Annikka Weissferdt, Ara A Vaporciyan, Tina Cascone, Jack A Roth, Jianjun Zhang, Boris Sepesi, Don L Gibbons, John V Heymach, Cara L Haymaker, Daniel J McGrail, Alexandre Reuben, Chantale Bernatchez
Combined IL-2, agonistic CD3 and 4-1BB stimulation preserve clonotype hierarchy in propagated non-small cell lung cancer tumor-infiltrating lymphocytes. Journal for immunotherapy of cancer 10 (2) (2022)
Shaolong Cao, Jennifer R Wang, Shuangxi Ji, Peng Yang, Yaoyi Dai, Shuai Guo, Matthew D Montierth, John Paul Shen, Xiao Zhao, Jingxiao Chen, Jaewon James Lee, Paola A Guerrero, Nicholas Spetsieris, Nikolai Engedal, Sinja Taavitsainen, Kaixian Yu, Julie Livingstone, Vinayak Bhandari, Shawna Marie Hubert, Najat C Daw, P Andrew Futreal, Eleni Efstathiou, Bora Lim, Andrea Viale, Jianjun Zhang, Matti Nykter, Bogdan A Czerniak, Powel H Brown, Charles Swanton, Pavlos Msaouel, Anirban Maitra, Edmund S Kopetz, Peter J Campbell, Terence P Speed, Paul C Boutros, Hongtu Zhu, Alfonso Urbanucci, Jonas Demeulemeester, Peter Van Loo, Wenyi Wang
Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression. Nature biotechnology 40 (11) (2022)
Omar Alhalabi, Jianfeng Chen, Yuxue Zhang, Yang Lu, Qi Wang, Sumankalai Ramachandran, Rebecca S Slack Tidwell, Guangchun Han, Xinmiao Yan, Jieru Meng, Ruiping Wang, Anh G Hoang, Wei-Lien Wang, Jian Song, Lidia Lopez, Alex Andreev-Drakhlin, Arlene O Siefker-Radtke, Xinqiao Zhang, William F Benedict, Amishi Yogesh Shah, Jennifer Wang, Pavlos Msaouel, Miao Zhang, Charles C Guo, Bogdan Czerniak, Carmen Behrens, Luisa Maren Solis Soto, Vassiliki Papadimitrakopoulou, Jeff Lewis, Waree Rinsurongkawong, Vadeerat Rinsurongkawong, Jiun-Kae Jack Lee, Jack A Roth, Stephen G Swisher, Ignacio Wistuba, John Victor Heymach, Jing Wang, Matthew T Campbell, Eleni Efstathiou, Mark Titus, Christopher L Logothetis, Thai H Ho, Jianjun Zhang, Linghua Wang, Jianjun Gao
MTAP deficiency creates an exploitable target for antifolate therapy in 9p21-loss cancers. Nature communications 13 (1) (2022)
Xiang Bai, Hanchen Wang, Liya Ma, Yongchao Xu, Jiefeng Gan, Ziwei Fan, Fan Yang, Ke Ma, Jiehua Yang, Song Bai, Chang Shu, Xinyu Zou, Renhao Huang, Changzheng Zhang, Xiaowu Liu, Dandan Tu, Chuou Xu, Wenqing Zhang, Xi Wang, Anguo Chen, Yu Zeng, Dehua Yang, Ming-Wei Wang, Nagaraj Holalkere, Neil J Halin, Ihab R Kamel, Jia Wu, Xuehua Peng, Xiang Wang, Jianbo Shao, Pattanasak Mongkolwat, Jianjun Zhang, Weiyang Liu, Michael Roberts, Zhongzhao Teng, Lucian Beer, Lorena Escudero Sanchez, Evis Sala, Daniel L Rubin, Adrian Weller, Joan Lasenby, Chuansheng Zheng, Jianming Wang, Zhen Li, Carola Schönlieb, Tian Xia
Erratum: Author Correction: Advancing COVID-19 diagnosis with privacy-preserving collaboration in artificial intelligence. Nature machine intelligence 4 (4) (2022)
Ming Tang, Hussein A Abbas, Marcelo Vailati Negrão, Maheshwari Ramineni, Xin Hu, Shawna Marie Hubert, Junya Fujimoto, Alexandre Reuben, Susan Varghese, Jianhua Zhang, Jun Li, Chi-Wan Chow, Xizeng Mao, Xingzhi Song, Won-Chul Lee, Jia Wu, Latasha Little, Curtis Gumbs, Carmen Behrens, Cesar A Moran, Annikka Weissferdt, Jiun-Kae Jack Lee, Boris Sepesi, Stephen G Swisher, Chao Cheng, Jonathan M Kurie, Don L Gibbons, John Victor Heymach, Ignacio I Wistuba, P Andrew Futreal, Neda Kalhor, Jianjun Zhang
The histologic phenotype of lung cancers is associated with transcriptomic features rather than genomic characteristics. Nature communications 12 (1) (2021)
Ming Chen, Runzhe Chen, Ying Jin, Jun Li, Xin Hu, Jianhua Zhang, Junya Fujimoto, Shawna Marie Hubert, Carl M Gay, Bo Zhu, Yanhua Tian, Nicholas McGranahan, Won-Chul Lee, Julie George, Xiao Hu, Yamei Chen, Meijuan Wu, Carmen Behrens, Chi-Wan Chow, Hoa H N Pham, Junya Fukuoka, Jia Wu, Edwin Roger Parra Cuentes, Latasha D Little, Curtis Gumbs, Xingzhi Song, Chang-Jiun Wu, Lixia Diao, Qi Wang, Robert Cardnell, Jianhua Zhang, Jing Wang, Xiuning Li, Don L Gibbons, John Victor Heymach, Jiun-Kae Jack Lee, William N William, Chao Cheng, Bonnie Glisson, Ignacio Wistuba, P Andrew Futreal, Roman K Thomas, Alexandre Reuben, Lauren Averett Byers, Jianjun Zhang
Cold and heterogeneous T cell repertoire is associated with copy number aberrations and loss of immune genes in small-cell lung cancer. Nature communications 12 (1) (2021)
Xin Hu, Marcos R Estecio, Runzhe Chen, Alexandre Reuben, Linghua Wang, Junya Fujimoto, Jian Carrot-Zhang, Nicholas McGranahan, Lisha Ying, Junya Fukuoka, Chi-Wan Chow, Hoa H N Pham, Myrna C B Godoy, Brett W Carter, Carmen Behrens, Jianhua Zhang, Mara B Antonoff, Boris Sepesi, Yue Lu, Harvey I Pass, Humam Kadara, Paul Scheet, Ara A Vaporciyan, John Victor Heymach, Ignacio I Wistuba, Jiun-Kae Jack Lee, P Andrew Futreal, Dan Su, Jean-Pierre J Issa, Jianjun Zhang
Evolution of DNA methylome from precancerous lesions to invasive lung adenocarcinomas. Nature communications 12 (1) (2021)
Kezhong Chen, Jing Bai, Alexandre Reuben, Heng Zhao, Guannan Kang, Chunliu Zhang, Qingyi Qi, Yaping Xu, Shawna Hubert, Lianpeng Chang, Yanfang Guan, Lin Feng, Kai Zhang, Kezhong Chen, Xin Yi, Xuefeng Xia, Shujun Cheng, Fan Yang, Jianjun Zhang, Jun Wang
Multiomics Analysis Reveals Distinct Immunogenomic Features of Lung Cancer with Ground-Glass Opacity. American journal of respiratory and critical care medicine 204 (10) (2021)
Jacqulyne P Robichaux, Xiuning Le, R S K Vijayan, J Kevin Hicks, Simon Heeke, Yasir Y Elamin, Heather Y Lin, Hibiki Udagawa, Ferdinandos Skoulidis, Hai Tran, Susan Varghese, Junqin He, Fahao Zhang, Monique B Nilsson, Lemei Hu, Alissa Poteete, Waree Rinsurongkawong, Xiaoshan Zhang, Chenghui Ren, Xiaoke Liu, Lingzhi Hong, Jianjun Zhang, Lixia Diao, Russell Madison, Alexa B Schrock, Jennifer Saam, Victoria Raymond, Bingliang Fang, Jing Wang, Min Jin Ha, Jason B Cross, Jhanelle E Gray, John Victor Heymach
Structure-based classification predicts drug response in EGFR-mutant NSCLC. Nature 597 (7878) (2021)
Xiang Bai, Hanchen Wang, Liya Ma, Yongchao Xu, Jiefeng Gan, Ziwei Fan, Fan Yang, Ke Ma, Jiehua Yang, Song Bai, Chang Shu, Xinyu Zou, Renhao Huang, Changzheng Zhang, Xiaowu Liu, Dandan Tu, Chuou Xu, Wenqing Zhang, Xi Wang, Anguo Chen, Yu Zeng, Dehua Yang, Ming-Wei Wang, Nagaraj Holalkere, Neil J Halin, Ihab R Kamel, Jia Wu, Xuehua Peng, Xiang Wang, Jianbo Shao, Pattanasak Mongkolwat, Jianjun Zhang, Weiyang Liu, Michael Roberts, Zhongzhao Teng, Lucian Beer, Lorena Escudero Sanchez, Evis Sala, Daniel L Rubin, Adrian Weller, Joan Lasenby, Chuansheng Zheng, Jianming Wang, Zhen Li, Carola Schönlieb, Tian Xia
Advancing COVID-19 diagnosis with privacy-preserving collaboration in artificial intelligence. Nature machine intelligence 3 (12) (2021)
Yasir Y Elamin, Jacqulyne P Robichaux, Brett W Carter, Mehmet Altan, Don L Gibbons, Frank V Fossella, Vincent K Lam, Anisha B Patel, Marcelo Vailati Negrão, Xiuning Li, Frank E Mott, Jianjun Zhang, Lei Feng, George Blumenschein, Anne S Tsao, John Victor Heymach
Poziotinib for Patients With HER2 Exon 20 Mutant Non-Small-Cell Lung Cancer: Results From a Phase II Trial. Journal of clinical oncology : official journal of the American Society of Clinical Oncology (2021)
Xiang Bai, Hanchen Wang, Liya Ma, Yongchao Xu, Jiefeng Gan, Ziwei Fan, Fan Yang, Ke Ma, Jiehua Yang, Song Bai, Chang Shu, Xinyu Zou, Renhao Huang, Changzheng Zhang, Xiaowu Liu, Dandan Tu, Chuou Xu, Wenqing Zhang, Xi Wang, Anguo Chen, Yu Zeng, Dehua Yang, Ming-Wei Wang, Nagaraj Holalkere, Neil J Halin, Ihab R Kamel, Jia Wu, Xuehua Peng, Xiang Wang, Jianbo Shao, Pattanasak Mongkolwat, Jianjun Zhang, Weiyang Liu, Michael Roberts, Zhongzhao Teng, Lucian Beer, Lorena Escudero Sanchez, Evis Sala, Daniel L Rubin, Adrian Weller, Joan Lasenby, Chuansheng Zheng, Jianming Wang, Zhen Li, Carola Schönlieb, Tian Xia
Advancing COVID-19 diagnosis with privacy-preserving collaboration in artificial intelligence. Nature machine intelligence 3 (12) (2021)
Hitoshi Dejima, Xin Hu, Runzhe Chen, Jianhua Zhang, Junya Fujimoto, Edwin Roger Parra Cuentes, Cara L Haymaker, Shawna Marie Hubert, Dzifa Duose, Luisa Maren Solis Soto, Dan Su, Junya Fukuoka, Kazuhiro Tabata, Hoa H N Pham, Nicholas Mcgranahan, Baili Zhang, Jie Ye, Lisha Ying, Latasha Little, Curtis Gumbs, Chi-Wan Chow, Marcos Roberto Estecio, Myrna C B Godoy, Mara B Antonoff, Boris Sepesi, Harvey I Pass, Carmen Behrens, Jianhua Zhang, Ara A Vaporciyan, John Victor Heymach, Paul Scheet, Jiun-Kae Jack Lee, Jia Wu, P Andrew Futreal, Alexandre Reuben, Humam Kadara, Ignacio I Wistuba, Jianjun Zhang
Immune evolution from preneoplasia to invasive lung adenocarcinomas and underlying molecular features. Nature communications 12 (1) (2021)
Cascone Tina, William N William, Annikka Weissferdt, Cheuk H Leung, Heather Y Lin, Apar Pataer, Myrna C B Godoy, Brett W Carter, Lorenzo Federico, Alexandre Reuben, Md Abdul Wadud Khan, Hitoshi Dejima, Alejandro Francisco-Cruz, Edwin Roger Parra Cuentes, Luisa Maren Solis Soto, Junya Fujimoto, Hai T Tran, Neda Kalhor, Frank V Fossella, Frank E Mott, Anne S Tsao, George Blumenschein, Xiuning Le, Jianjun Zhang, Ferdinandos Skoulidis, Jonathan M Kurie, Mehmet Altan, Charles Lu, Bonnie S Glisson, Lauren Averett Byers, Yasir Y Elamin, Reza J Mehran, David C Rice, Garrett L Walsh, Wayne L Hofstetter, Jack A Roth, Mara B Antonoff, Humam Kadara, Cara L Haymaker, Chantale Bernatchez, Nadim J Ajami, Robert R Jenq, Padmanee Sharma, James P Allison, P Andrew Futreal, Jennifer A Wargo, Ignacio I Wistuba, Stephen G Swisher, Jiun-Kae Jack Lee, Don L Gibbons, Ara A Vaporciyan, John Victor Heymach, Boris Sepesi
Neoadjuvant nivolumab or nivolumab plus ipilimumab in operable non-small cell lung cancer: the phase 2 randomized NEOSTAR trial. Nature medicine 27 (3) (2021)
Xiang Bai, Hanchen Wang, Liya Ma, Yongchao Xu, Jiefeng Gan, Ziwei Fan, Fan Yang, Ke Ma, Jiehua Yang, Song Bai, Chang Shu, Xinyu Zou, Renhao Huang, Changzheng Zhang, Xiaowu Liu, Dandan Tu, Chuou Xu, Wenqing Zhang, Xi Wang, Anguo Chen, Yu Zeng, Dehua Yang, Ming-Wei Wang, Nagaraj Holalkere, Neil J Halin, Ihab R Kamel, Jia Wu, Xuehua Peng, Xiang Wang, Jianbo Shao, Pattanasak Mongkolwat, Jianjun Zhang, Weiyang Liu, Michael Roberts, Zhongzhao Teng, Lucian Beer, Lorena Escudero Sanchez, Evis Sala, Daniel L Rubin, Adrian Weller, Joan Lasenby, Chuansheng Zheng, Jianming Wang, Zhen Li, Carola Schönlieb, Tian Xia
Advancing COVID-19 diagnosis with privacy-preserving collaboration in artificial intelligence. Nature machine intelligence 3 (12) (2021)
Xiuning Li, Lingzhi Hong, Charles H Hensel, Rongrong Chen, Haley Kemp, Niamh Coleman, Christine A Ciunci, Stephen V Liu, Marcelo V Negrao, Jennifer Yen, Xuefeng Xia, Juergen Scheuenpflug, Christopher Stroh, Dilafruz Juraeva, Anne S Tsao, David S Hong, Victoria M Raymond, Paul K Paik, Jianjun Zhang, John V Heymach
Landscape and Clonal Dominance of Co-occurring Genomic Alterations in Non-Small-Cell Lung Cancer Harboring MET Exon 14 Skipping. JCO precision oncology 5 (2021)
Xiang Bai, Hanchen Wang, Liya Ma, Yongchao Xu, Jiefeng Gan, Ziwei Fan, Fan Yang, Ke Ma, Jiehua Yang, Song Bai, Chang Shu, Xinyu Zou, Renhao Huang, Changzheng Zhang, Xiaowu Liu, Dandan Tu, Chuou Xu, Wenqing Zhang, Xi Wang, Anguo Chen, Yu Zeng, Dehua Yang, Ming-Wei Wang, Nagaraj Holalkere, Neil J Halin, Ihab R Kamel, Jia Wu, Xuehua Peng, Xiang Wang, Jianbo Shao, Pattanasak Mongkolwat, Jianjun Zhang, Weiyang Liu, Michael Roberts, Zhongzhao Teng, Lucian Beer, Lorena Escudero Sanchez, Evis Sala, Daniel L Rubin, Adrian Weller, Joan Lasenby, Chuansheng Zheng, Jianming Wang, Zhen Li, Carola Schönlieb, Tian Xia
Advancing COVID-19 diagnosis with privacy-preserving collaboration in artificial intelligence. Nature machine intelligence 3 (12) (2021)
Meagan S Whisenant, Loretta A Williams, Araceli Garcia Gonzalez, Tito Mendoza, Qiuling Shi, Charles S Cleeland, Jianjun Zhang, John Victor Heymach, George R Simon
What Do Patients With Non-Small-Cell Lung Cancer Experience? Content Domain for the MD Anderson Symptom Inventory for Lung Cancer. JCO oncology practice 16 (10) (2020)