Jeremy L Muhlich (Jeremy Muhlich, J Muhlich)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 18

Top Topics

Metastatic Colorectal Cancer

Quality Control

Top Venues

Molecular systems biology

bioRxiv : the preprint server for biology

Nature biomedical engineering

This page only lists publications with an associated author ORCID identifier.

Publications

Simon Warchol, Jakob Troidl, Jeremy L Muhlich, Robert Krueger, John Hoffer, Tica Lin, Johanna Beyer, Elena Glassman, Peter Karl Sorger, Hanspeter Pfister
psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring. bioRxiv : the preprint server for biology (2024)
Simon Warchol, J Troidl, Jeremy L Muhlich, R Krueger, J Hoffer, T Lin, J Beyer, E Glassman, Peter Karl Sorger, H Pfister
psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring. bioRxiv : the preprint server for biology (2024)
Simon Warchol, Jakob Troidl, Jeremy L Muhlich, Robert Krueger, John Hoffer, Tica Lin, Johanna Beyer, Elena Glassman, Peter Karl Sorger, Hanspeter Pfister
psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring. bioRxiv : the preprint server for biology (2024)
Simon Warchol, J Troidl, Jeremy L Muhlich, R Krueger, J Hoffer, T Lin, J Beyer, E Glassman, Peter Karl Sorger, H Pfister
psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring. bioRxiv : the preprint server for biology (2024)
Gregory J Baker, Edward Novikov, Ziyuan Zhao, Tuulia Vallius, Janae A Davis, Jia-Ren Lin, Jeremy L Muhlich, Elizabeth A Mittendorf, Sandro Santagata, Jennifer L Guerriero, Peter Karl Sorger
Quality Control for Single Cell Analysis of High-plex Tissue Profiles using CyLinter. bioRxiv : the preprint server for biology (2023)
Fabian Fröhlich, Luca Gerosa, Jeremy L Muhlich, Peter Karl Sorger
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance. Molecular systems biology 19 (2) (2023)
Fabian Fröhlich, Luca Gerosa, Jeremy L Muhlich, Peter Karl Sorger
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance. Molecular systems biology 19 (2) (2023)
Fabian Fröhlich, Luca Gerosa, Jeremy L Muhlich, Peter Karl Sorger
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance. Molecular systems biology 19 (2) (2023)
Fabian Fröhlich, Luca Gerosa, Jeremy L Muhlich, Peter Karl Sorger
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance. Molecular systems biology 19 (2) (2023)
Fabian Fröhlich, Luca Gerosa, Jeremy L Muhlich, Peter Karl Sorger
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance. Molecular systems biology (2023)
Fabian Fröhlich, Luca Gerosa, Jeremy L Muhlich, Peter Karl Sorger
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance. Molecular systems biology 19 (2) (2023)
Fabian Fröhlich, Luca Gerosa, Jeremy L Muhlich, Peter Karl Sorger
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance. Molecular systems biology (2023)
Jeremy L Muhlich, Yu-An Chen, Clarence Yapp, Douglas Russell, Sandro Santagata, Peter K Sorger
Stitching and registering highly multiplexed whole-slide images of tissues and tumors using ASHLAR. Bioinformatics (Oxford, England) 38 (19) (2022)
Denis Schapiro, Clarence Yapp, Artem Sokolov, Sheila M Reynolds, Yu-An Chen, Damir Sudar, Yubin Xie, Jeremy L Muhlich, Raquel Arias-Camison, Sarah Arena, Adam J Taylor, Milen Nikolov, Madison Tyler, Jia-Ren Lin, Erik A Burlingame, null null, Young Hwan Chang, Samouil L Farhi, Vesteinn Thorsson, Nithya Venkatamohan, Julia L Drewes, Dana Pe'er, David A Gutman, Markus D Herrmann, Nils Gehlenborg, Peter Bankhead, Joseph T Roland, John M Herndon, Michael Paul Snyder, R Michael Angelo, Garry Nolan, Jason R Swedlow, Nikolaus Schultz, Daniel T Merrick, Sarah A Mazzili, Ethan Cerami, Scott J Rodig, Sandro Santagata, Peter Karl Sorger
MITI minimum information guidelines for highly multiplexed tissue images. Nature methods 19 (3) (2022)
Denis Schapiro, Artem Sokolov, Clarence Yapp, Yu-An Chen, Jeremy L Muhlich, Joshua Hess, Allison L Creason, Ajit J Nirmal, Gregory J Baker, Maulik K Nariya, Jia-Ren Lin, Zoltan Maliga, Connor A Jacobson, Matthew W Hodgman, Juha Ruokonen, Samouil L Farhi, Domenic Abbondanza, Eliot T McKinley, Daniel Persson, Courtney Betts, Shamilene Sivagnanam, Aviv Regev, Jeremy Goecks, D Borden Lacy, Lisa M Coussens, Sandro Santagata, Peter Karl Sorger
MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging. Nature methods (2021)
Rumana Rashid, Yu-An Chen, John Hoffer, Jeremy L Muhlich, Jia-Ren Lin, Robert Krueger, Hanspeter Pfister, Richard Mitchell, Sandro Santagata, Peter Karl Sorger
Narrative online guides for the interpretation of digital-pathology images and tissue-atlas data. Nature biomedical engineering (2021)
Kenichi Shimada, John A Bachman, Jeremy L Muhlich, Timothy J Mitchison
shinyDepMap, a tool to identify targetable cancer genes and their functional connections from Cancer Dependency Map data. eLife 10 (2021)
Rumana Rashid, Giorgio Gaglia, Yu-An Chen, Jia-Ren Lin, Zi-Ming Du, Zoltan Maliga, Denis Schapiro, Clarence Yapp, Jeremy L Muhlich, Artem Sokolov, Peter Sorger, Sandro Santagata
Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer. Scientific data 6 (1) (2019)