John van der Oost

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 28

Top Topics

Escherichia Coli

Top Venues

Science (New York, N.Y.)

Nucleic acids research

Nature communications

The CRISPR journal

This page only lists publications with an associated author ORCID identifier.

Publications

Jurre A Steens, Jack P K Bravo, Carl Raymund P Salazar, Caglar Yildiz, Afonso M Amieiro, Stephan Köstlbacher, Stijn H P Prinsen, Ane S Andres, Constantinos Patinios, Andreas Bardis, Arjan Barendregt, Richard A Scheltema, Thijs J G Ettema, John van der Oost, David W Taylor, Raymond H J Staals
Type III-B CRISPR-Cas cascade of proteolytic cleavages. Science (New York, N.Y.) 383 (6682) (2024)
Jurre A Steens, Jack P K Bravo, Carl Raymund P Salazar, Caglar Yildiz, Afonso M Amieiro, Stephan Köstlbacher, Stijn H P Prinsen, Ane S Andres, Constantinos Patinios, Andreas Bardis, Arjan Barendregt, Richard A Scheltema, Thijs J G Ettema, John van der Oost, David W Taylor, Raymond H J Staals
Type III-B CRISPR-Cas cascade of proteolytic cleavages. Science (New York, N.Y.) 383 (6682) (2024)
Jurre A Steens, Jack P K Bravo, Carl Raymund P Salazar, Caglar Yildiz, Afonso M Amieiro, Stephan Köstlbacher, Stijn H P Prinsen, Ane S Andres, Constantinos Patinios, Andreas Bardis, Arjan Barendregt, Richard A Scheltema, Thijs J G Ettema, John van der Oost, David W Taylor, Raymond H J Staals
Type III-B CRISPR-Cas cascade of proteolytic cleavages. Science (New York, N.Y.) 383 (6682) (2024)
Jurre A Steens, Jack P K Bravo, Carl Raymund P Salazar, Caglar Yildiz, Afonso M Amieiro, Stephan Köstlbacher, Stijn H P Prinsen, Ane S Andres, Constantinos Patinios, Andreas Bardis, Arjan Barendregt, Richard A Scheltema, Thijs J G Ettema, John van der Oost, David W Taylor, Raymond H J Staals
Type III-B CRISPR-Cas cascade of proteolytic cleavages. Science (New York, N.Y.) 383 (6682) (2024)
Jurre A Steens, Jack P K Bravo, Carl Raymund P Salazar, Caglar Yildiz, Afonso M Amieiro, Stephan Köstlbacher, Stijn H P Prinsen, Ane S Andres, Constantinos Patinios, Andreas Bardis, Arjan Barendregt, Richard A Scheltema, Thijs J G Ettema, John van der Oost, David W Taylor, Raymond H J Staals
Type III-B CRISPR-Cas cascade of proteolytic cleavages. Science (New York, N.Y.) 383 (6682) (2024)
Despoina Trasanidou, Patrick Barendse, Evgenios Bouzetos, Laura de Haan, Hans Bouwmeester, Raymond H J Staals, Ioannis Mougiakos, John van der Oost
Efficient Genome and Base Editing in Human Cells Using ThermoCas9. The CRISPR journal (2023)
Thijs Nieuwkoop, Barbara R Terlouw, Katherine G Stevens, Richard A Scheltema, Dick de Ridder, John van der Oost, Nico J Claassens
Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning. Nucleic acids research 51 (5) (2023)
Thijs Nieuwkoop, Barbara R Terlouw, Katherine G Stevens, Richard A Scheltema, Dick de Ridder, John van der Oost, Nico J Claassens
Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning. Nucleic acids research 51 (5) (2023)
Satoshi N Omura, Ryoya Nakagawa, Christian Südfeld, Ricardo Villegas Warren, Wen Y Wu, Hisato Hirano, Charlie Laffeber, Tsukasa Kusakizako, Yoshiaki Kise, Joyce H G Lebbink, Yuzuru Itoh, John van der Oost, Osamu Nureki
Mechanistic and evolutionary insights into a type V-M CRISPR-Cas effector enzyme. Nature structural & molecular biology (2023)
Ryoya Nakagawa, Hisato Hirano, Satoshi N Omura, Suchita P Nety, Soumya Kannan, Han Altae-Tran, Xiao Yao, Yuriko Sakaguchi, Takayuki Ohira, Wen Y Wu, Hiroshi Nakayama, Yutaro Shuto, Tatsuki Tanaka, Fumiya K Sano, Tsukasa Kusakizako, Yoshiaki Kise, Yuzuru Itoh, Naoshi Dohmae, John van der Oost, Tsutomu Suzuki, Feng Zhang, Osamu Nureki
Cryo-EM structure of the transposon-associated TnpB enzyme. Nature (2023)
Despoina Trasanidou, Ana Potocnik, Patrick Barendse, Prarthana Mohanraju, Evgenios Bouzetos, Efthymios Karpouzis, Amber Desmet, Richard van Kranenburg, John van der Oost, Raymond H J Staals, Ioannis Mougiakos
Characterization of the AcrIIC1 anti‒CRISPR protein for Cas9‒based genome engineering in E. coli. Communications biology 6 (1) (2023)
Thijs Nieuwkoop, Barbara R Terlouw, Katherine G Stevens, Richard A Scheltema, Dick de Ridder, John van der Oost, Nico J Claassens
Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning. Nucleic acids research (2023)
Thomas Swartjes, Peng Shang, Dennis T M van den Berg, Tim Künne, Niels Geijsen, Stan J J Brouns, John van der Oost, Raymond H J Staals, Richard A Notebaart
Modulating CRISPR-Cas Genome Editing Using Guide-Complementary DNA Oligonucleotides. The CRISPR journal 5 (4) (2022)
Prarthana Mohanraju, Chinmoy Saha, Peter van Baarlen, Rogier Louwen, Raymond H J Staals, John van der Oost
Alternative functions of CRISPR-Cas systems in the evolutionary arms race. Nature reviews. Microbiology 20 (6) (2022)
Marianna Rossetti, Rosa Merlo, Neda Bagheri, Danila Moscone, Anna Valenti, Aakash Saha, Pablo R Arantes, Rudy Ippodrino, Francesco Ricci, Ida Treglia, Elisabetta Delibato, John van der Oost, Giulia Palermo, Giuseppe Perugino, Alessandro Porchetta
Enhancement of CRISPR/Cas12a trans-cleavage activity using hairpin DNA reporters. Nucleic acids research 50 (14) (2022)
Wen Y Wu, Simon A Jackson, Cristóbal Almendros, Anna C Haagsma, Suzan Yilmaz, Gerrit Gort, John van der Oost, Stan J J Brouns, Raymond H J Staals
Adaptation by Type V-A and V-B CRISPR-Cas Systems Demonstrates Conserved Protospacer Selection Mechanisms Between Diverse CRISPR-Cas Types. The CRISPR journal 5 (4) (2022)
Giovanni Gallo, Ioannis Mougiakos, Mauricio Bianco, Miriam Carbonaro, Andrea Carpentieri, Anna Illiano, Pietro Pucci, Simonetta Bartolucci, John van der Oost, Gabriella Fiorentino
A Hyperthermoactive-Cas9 Editing Tool Reveals the Role of a Unique Arsenite Methyltransferase in the Arsenic Resistance System of Thermus thermophilus HB27. mBio (2021)
Jurre A Steens, Yifan Zhu, David W Taylor, Jack P K Bravo, Stijn H P Prinsen, Cor D Schoen, Bart J F Keijser, Michel Ossendrijver, L Marije Hofstra, Stan J J Brouns, Akeo Shinkai, John van der Oost, Raymond H J Staals
SCOPE enables type III CRISPR-Cas diagnostics using flexible targeting and stringent CARF ribonuclease activation. Nature communications 12 (1) (2021)
John van der Oost
Domestication of proteins - from evolution to revolution. Microbial biotechnology (2021)
Lorenzo Olivi, Mareike Berger, Ramon N P Creyghton, Nicola de Franceschi, Cees Dekker, Bela M Mulder, Nico J Claassens, Pieter Rein Ten Wolde, John van der Oost
Towards a synthetic cell cycle. Nature communications 12 (1) (2021)
Constantinos Patinios, Sjoerd C A Creutzburg, Adini Q Arifah, Belén Adiego-Pérez, Evans A Gyimah, Colin J Ingham, Servé W M Kengen, John van der Oost, Raymond H J Staals
Streamlined CRISPR genome engineering in wild-type bacteria using SIBR-Cas. Nucleic acids research 49 (19) (2021)
Chinmoy Saha, Prarthana Mohanraju, Andrew Peter Stubbs, Gaurav Dugar, Youri Hoogstrate, Gert-Jan Kremers, Wiggert A van Cappellen, Deborah Horst-Kreft, Charlie Laffeber, Joyce H G Lebbink, Serena Bruens, Duncan Gaskin, Dior Beerens, Maarten Klunder, Rob Joosten, Jeroen A A Demmers, Dik C van Gent, Johan W Mouton, Peter J van der Spek, John van der Oost, Peter van Baarlen, Rogier Louwen
Guide-free Cas9 from pathogenic Campylobacter jejuni bacteria causes severe damage to DNA. Science advances 6 (25) (2020)
Víctor J Carrión, Juan E Pérez-Jaramillo, Viviane Cordovez, Vittorio Tracanna, Mattias de Hollander, Daniel Ruiz-Buck, Lucas William Mendes, Wilfred F J Van IJcken, Ruth Gomez-Exposito, Somayah S Elsayed, Prarthana Mohanraju, Adini Q Arifah, John van der Oost, Joseph N Paulson, Rodrigo Mendes, Gilles P van Wezel, Marnix H Medema, Jos M Raaijmakers
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome. Science (New York, N.Y.) 366 (6465) (2020)
Mihris Ibnu Saleem Naduthodi, Prarthana Mohanraju, Christian Südfeld, Sarah D'Adamo, Maria J Barbosa, John van der Oost
CRISPR-Cas ribonucleoprotein mediated homology-directed repair for efficient targeted genome editing in microalgae Nannochloropsis oceanica IMET1. Biotechnology for biofuels 12 (2019)
Kira S Makarova, Yuri I Wolf, Jaime Iranzo, Sergey A Shmakov, Omer S Alkhnbashi, Stan J J Brouns, Emmanuelle Charpentier, David Cheng, Daniel H Haft, Philippe Horvath, Sylvain Moinau, Francisco J M Mojica, David Scott, Shiraz A Shah, Virginijus Siksnys, Michael P Terns, Česlovas Venclovas, Malcolm F White, Alexander F Yakunin, Winston Yan, Feng Zhang, Roger A Garrett, Rolf Backofen, John van der Oost, Rodolphe Barrangou, Eugene V Koonin
Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants. Nature reviews. Microbiology 18 (2) (2019)
Peter Cameron, Mary M Coons, Sanne E Klompe, Alexandra M Lied, Stephen C Smith, Bastien Vidal, Paul D Donohoue, Tomer Rotstein, Bryan W Kohrs, David B Nyer, Rachel Kennedy, Lynda M Banh, Carolyn Williams, Mckenzi S Toh, Matthew J Irby, Leslie S Edwards, Chun-Han Lin, Arthur L G Owen, Tim Künne, John van der Oost, Stan J J Brouns, Euan M Slorach, Chris K Fuller, Scott Gradia, Steven B Kanner, Andrew P May, Samuel H Sternberg
Harnessing type I CRISPR-Cas systems for genome engineering in human cells. Nature biotechnology 37 (12) (2019)
Tao Ju Cui, Misha Klein, Jorrit W Hegge, Stanley D Chandradoss, John van der Oost, Martin Depken, Chirlmin Joo
Argonaute bypasses cellular obstacles without hindrance during target search. Nature communications 10 (1) (2019)
Wen Y Wu, Joyce H G Lebbink, Roland Kanaar, Niels Geijsen, John van der Oost
Genome editing by natural and engineered CRISPR-associated nucleases. Nature chemical biology 14 (7) (2018)