Rodolphe Barrangou (R Barrangou)

ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 49

Top Topics

Clostridium Difficile

Gene Expression

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Avery Roberts, Daniel Spang, Rosemary Sanozky-Dawes, Matthew A Nethery, Rodolphe Barrangou
Characterization of Ligilactobacillus salivarius CRISPR-Cas systems. mSphere (2024)
Rodolphe Barrangou
AI and SynBio Meet CRISPR Heralding a New Genome Editing Era. The CRISPR journal 7 (4) (2024)
Avery Roberts, Daniel Spang, Rosemary Sanozky-Dawes, Matthew A Nethery, Rodolphe Barrangou
Characterization of Ligilactobacillus salivarius CRISPR-Cas systems. mSphere 9 (7) (2024)
Rodolphe Barrangou
Surveying the State of CRISPR and Gene Editing. The CRISPR journal 7 (3) (2024)
Avery Roberts, Daniel Spang, Rosemary Sanozky-Dawes, Matthew A Nethery, Rodolphe Barrangou
Characterization of Ligilactobacillus salivarius CRISPR-Cas systems. mSphere 9 (7) (2024)
Avery Roberts, Daniel Spang, Rosemary Sanozky-Dawes, Matthew A Nethery, Rodolphe Barrangou
Characterization of Ligilactobacillus salivarius CRISPR-Cas systems. mSphere 9 (7) (2024)
Brook Pyhtila, Seth Kasowitz, Rachel Leeson, Rodolphe Barrangou
The Expanding Dissemination and Distribution Patterns of Diverse CRISPR Plasmids by Addgene. The CRISPR journal (2023)
Darby Gilfillan, Allison C Vilander, Meichen Pan, Yong Jun Goh, Sarah O'Flaherty, Ningguo Feng, Bridget E Fox, Callie Lang, Harry B Greenberg, Zaid Abdo, Rodolphe Barrangou, Gregg A Dean
Lactobacillus acidophilus Expressing Murine Rotavirus VP8 and Mucosal Adjuvants Induce Virus-Specific Immune Responses. Vaccines 11 (12) (2023)
Daniel B Sulis, Xiao Jiang, Chenmin Yang, Barbara M Marques, Megan L Matthews, Zachary Miller, Kai Lan, Carlos Cofre-Vega, Baoguang Liu, Runkun Sun, Henry Sederoff, Ryan G Bing, Xiaoyan Sun, Cranos M Williams, Hasan Jameel, Richard Phillips, Hou-Min Chang, Ilona M Peszlen, Yung-Yun Huang, Wei Li, Robert M Kelly, Ronald R Sederoff, Vincent L Chiang, Rodolphe Barrangou, Jack P Wang
Multiplex CRISPR editing of wood for sustainable fiber production. Science (New York, N.Y.) 381 (6654) (2023)
Sarah O'Flaherty, Natalia Cobian, Rodolphe Barrangou
Impact of Pomegranate on Probiotic Growth, Viability, Transcriptome and Metabolism. Microorganisms 11 (2) (2023)
Darby Gilfillan, Allison C Vilander, Meichen Pan, Yong Jun Goh, Sarah O'Flaherty, Ningguo Feng, Bridget E Fox, Callie Lang, Harry B Greenberg, Zaid Abdo, Rodolphe Barrangou, Gregg A Dean
Lactobacillus acidophilus Expressing Murine Rotavirus VP8 and Mucosal Adjuvants Induce Virus-Specific Immune Responses. Vaccines 11 (12) (2023)
Sarah O'Flaherty, Natalia Cobian, Rodolphe Barrangou
Impact of Pomegranate on Probiotic Growth, Viability, Transcriptome and Metabolism. Microorganisms 11 (2) (2023)
Clinton A Page, Ilenys M Pérez-Díaz, Meichen Pan, Rodolphe Barrangou
Genome-Wide Comparative Analysis of Lactiplantibacillus pentosus Isolates Autochthonous to Cucumber Fermentation Reveals Subclades of Divergent Ancestry. Foods (Basel, Switzerland) 12 (13) (2023)
Benja-Min A Adler, Marena I Trinidad, Daniel Bellieny Rabelo, Elaine Zhang, Hannah M Karp, Petr Skopintsev, Brittney W Thornton, Rachel F Weissman, Peter H Yoon, Lin-Xing Chen, Tomas Hessler, Amy R Eggers, David Colognori, Ron S Boger, Erin E Doherty, Connor A Tsuchida, Ryan V Tran, Laura Hofman, Honglue Shi, Kevin M Wasko, Zehan Zhou, Chenglong Xia, Muntathar J Al-Shimary, Jaymin R Patel, Vienna C J X Thomas, Rithu Pattali, Matthew J Kan, Anna Vardapetyan, Alana Yang, Arushi Lahiri, Michaela F Maxwell, Andrew G Murdock, Glenn C Ramit, Hope R Henderson, Roland W Calvert, Rebecca S Bamert, Gavin J Knott, Audrone Lapinaite, Patrick Pausch, Joshua C Cofsky, Erik J Sontheimer, Blake Wiedenheft, Peter C Fineran, Stan J J Brouns, Dipali G Sashital, Brian C Thomas, Christopher T Brown, Daniela S A Goltsman, Rodolphe Barrangou, Virginijus Siksnys, Jillian F Banfield, David F Savage, Jennifer A Doudna
CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes. Nucleic acids research (2023)
Matthew H Foley, Morgan E Gibbs, Allison K Stewart, Sarah O'Flaherty, Emily C Gentry, Shakshi Patel, Violet V Beaty, Garrison Allen, Meichen Pan, Joshua B Simpson, Caroline Perkins, Molly E Vanhoy, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Pieter C Dorrestein, Erin S Baker, Matthew R Redinbo, Rodolphe Barrangou, Casey M Theriot
Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut. Nature microbiology (2023)
Darby Gilfillan, Allison C Vilander, Meichen Pan, Yong Jun Goh, Sarah O'Flaherty, Ningguo Feng, Bridget E Fox, Callie Lang, Harry B Greenberg, Zaid Abdo, Rodolphe Barrangou, Gregg A Dean
Lactobacillus acidophilus Expressing Murine Rotavirus VP8 and Mucosal Adjuvants Induce Virus-Specific Immune Responses. Vaccines 11 (12) (2023)
Sarah O'Flaherty, Natalia Cobian, Rodolphe Barrangou
Impact of Pomegranate on Probiotic Growth, Viability, Transcriptome and Metabolism. Microorganisms 11 (2) (2023)
Avery Roberts, Matthew A Nethery, Rodolphe Barrangou
Functional characterization of diverse type I-F CRISPR-associated transposons. Nucleic acids research 50 (20) (2022)
Benja-Min A Adler, Tomas Hessler, Brady F Cress, Arushi Lahiri, Vivek K Mutalik, Rodolphe Barrangou, Jillian F Banfield, Jennifer A Doudna
Broad-spectrum CRISPR-Cas13a enables efficient phage genome editing. Nature microbiology 7 (12) (2022)
Meichen Pan, Wesley Morovic, Claudio Hidalgo-Cantabrana, Avery Roberts, Kimberly K O Walden, Yong Jun Goh, Rodolphe Barrangou
Genomic and epigenetic landscapes drive CRISPR-based genome editing in Bifidobacterium . Proceedings of the National Academy of Sciences of the United States of America 119 (30) (2022)
Matthew A Nethery, Claudio Hidalgo-Cantabrana, Avery Roberts, Rodolphe Barrangou
CRISPR-based engineering of phages for in situ bacterial base editing. Proceedings of the National Academy of Sciences of the United States of America 119 (46) (2022)
Yong Jun Goh, Rodolphe Barrangou
Portable CRISPR-Cas9N System for Flexible Genome Engineering in Lactobacillus acidophilus, Lactobacillus gasseri, and Lactobacillus paracasei. Applied and environmental microbiology 87 (6) (2021)
Yong Jun Goh, Rodolphe Barrangou, Todd R Klaenhammer
In Vivo Transcriptome of Lactobacillus acidophilus and Colonization Impact on Murine Host Intestinal Gene Expression. mBio 12 (1) (2021)
Matthew H Foley, Sarah O'Flaherty, Garrison Allen, Alissa J Rivera, Allison K Stewart, Rodolphe Barrangou, Casey M Theriot
Lactobacillus bile salt hydrolase substrate specificity governs bacterial fitness and host colonization. Proceedings of the National Academy of Sciences of the United States of America 118 (6) (2021)
Benjamin E Rubin, Spencer Diamond, Brady F Cress, Alexander Crits-Christoph, Yue Clare Lou, Adair L Borges, Haridha Shivram, Christine He, Michael Xu, Zeyi Zhou, Sara J Smith, Rachel Rovinsky, Dylan C J Smock, Kimberly Tang, Trenton K Owens, Netravathi Krishnappa, Rohan Sachdeva, Rodolphe Barrangou, Adam M Deutschbauer, Jillian F Banfield, Jennifer A Doudna
Species- and site-specific genome editing in complex bacterial communities. Nature microbiology (2021)
Rodolphe Barrangou, Colin Hill
Todd R. Klaenhammer, an inspirational food microbiologist who leaves a lasting legacy. Proceedings of the National Academy of Sciences of the United States of America 118 (22) (2021)
Hanzhi Yu, Lan Xue, Rodolphe Barrangou, Shaowei Chen, Ying Huang
Opinion: Toward inclusive global governance of human genome editing. Proceedings of the National Academy of Sciences of the United States of America 118 (47) (2021)
Katelyn Brandt, Rodolphe Barrangou
Adaptive response to iterative passages of five Lactobacillus species in simulated vaginal fluid. BMC microbiology 20 (1) (2020)
Courtney Klotz, Yong Jun Goh, Sarah O'Flaherty, Rodolphe Barrangou
S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM. BMC microbiology 20 (1) (2020)
Katelyn Brandt, Matthew A Nethery, Sarah O'Flaherty, Rodolphe Barrangou
Genomic characterization of Lactobacillus fermentum DSM 20052. BMC genomics 21 (1) (2020)
Meichen Pan, Claudio Hidalgo-Cantabrana, Rodolphe Barrangou
Host and body site-specific adaptation of Lactobacillus crispatus genomes. NAR genomics and bioinformatics 2 (1) (2020)
Sarah O'Flaherty, Matthew H Foley, Alissa J Rivera, Casey M Theriot, Rodolphe Barrangou
Complete Genome Sequence of Lactobacillus johnsonii NCK2677, Isolated from Mice. Microbiology resource announcements 9 (43) (2020)
Kurt Selle, Joshua R Fletcher, Hannah Tuson, Daniel S Schmitt, Lana McMillan, Gowrinarayani S Vridhambal, Alissa J Rivera, Stephanie A Montgomery, Louis-Charles Fortier, Rodolphe Barrangou, Casey M Theriot, David G Ousterout
In Vivo Targeting of Clostridioides difficile Using Phage-Delivered CRISPR-Cas3 Antimicrobials. mBio 11 (2) (2020)
A D Reed, M A Nethery, A Stewart, Rodolphe Barrangou, C M Theriot
Strain-Dependent Inhibition of Clostridioides difficile by Commensal Clostridia Carrying the Bile Acid-Inducible (bai) Operon. Journal of bacteriology 202 (11) (2020)
Matthew H Foley, Sarah O'Flaherty, Rodolphe Barrangou, Casey M Theriot
Bile salt hydrolases: Gatekeepers of bile acid metabolism and host-microbiome crosstalk in the gastrointestinal tract. PLoS pathogens 15 (3) (2019)
Joshua K Young, Stephen L Gasior, Spencer Jones, Lijuan Wang, Pedro Navarro, Becca Vickroy, Rodolphe Barrangou
The repurposing of type I-E CRISPR-Cascade for gene activation in plants. Communications biology 2 (2019)
Matthew A Nethery, Emily DeCrescenzo Henriksen, Katheryne V Daughtry, Suzanne D Johanningsmeier, Rodolphe Barrangou
Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage. BMC genomics 20 (1) (2019)
Kira S Makarova, Yuri I Wolf, Jaime Iranzo, Sergey A Shmakov, Omer S Alkhnbashi, Stan J J Brouns, Emmanuelle Charpentier, David Cheng, Daniel H Haft, Philippe Horvath, Sylvain Moinau, Francisco J M Mojica, David Scott, Shiraz A Shah, Virginijus Siksnys, Michael P Terns, Česlovas Venclovas, Malcolm F White, Alexander F Yakunin, Winston Yan, Feng Zhang, Roger A Garrett, Rolf Backofen, John van der Oost, Rodolphe Barrangou, Eugene V Koonin
Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants. Nature reviews. Microbiology 18 (2) (2019)
Claudio Hidalgo-Cantabrana, Yong Jun Goh, Meichen Pan, Rosemary Sanozky-Dawes, Rodolphe Barrangou
Genome editing using the endogenous type I CRISPR-Cas system in Lactobacillus crispatus. Proceedings of the National Academy of Sciences of the United States of America 116 (32) (2019)
Andrew Varble, Sean Meaden, Rodolphe Barrangou, Edze R Westra, Luciano A Marraffini
Recombination between phages and CRISPR-cas loci facilitates horizontal gene transfer in staphylococci. Nature microbiology 4 (6) (2019)
Claudio Hidalgo-Cantabrana, Rosemary Sanozky-Dawes, Rodolphe Barrangou
Insights into the Human Virome Using CRISPR Spacers from Microbiomes. Viruses 10 (9) (2018)
Alexandra B Crawley, Emily D Henriksen, Emily Stout, Katelyn Brandt, Rodolphe Barrangou
Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli. Scientific reports 8 (1) (2018)
Sarah O'Flaherty, Alexandra B Crawley, Casey M Theriot, Rodolphe Barrangou
The Lactobacillus Bile Salt Hydrolase Repertoire Reveals Niche-Specific Adaptation. mSphere 3 (3) (2018)
Matthew A Nethery, Rodolphe Barrangou
CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline. RNA biology 16 (4) (2018)
Wesley Morovic, Paige Roos, Bryan Zabel, Claudio Hidalgo-Cantabrana, Anthony Kiefer, Rodolphe Barrangou
Transcriptional and Functional Analysis of Bifidobacterium animalis subsp. lactis Exposure to Tetracycline. Applied and environmental microbiology 84 (23) (2018)
Guilhem Faure, Sergey A Shmakov, Kira S Makarova, Yuri I Wolf, Alexandra B Crawley, Rodolphe Barrangou, Eugene V Koonin
Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems. RNA biology 16 (4) (2018)
Mia C Theilmann, Yong Jun Goh, Kristian Fog Nielsen, Todd R Klaenhammer, Rodolphe Barrangou, Maher Abou Hachem
Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals. mBio 8 (6) (2017)
Alice Toms, Rodolphe Barrangou
On the global CRISPR array behavior in class I systems. Biology direct 12 (1) (2017)
Rodolphe Barrangou, Jennifer A Doudna
Applications of CRISPR technologies in research and beyond. Nature biotechnology 34 (9) (2016)
Brant R Johnson, Jeffrey Hymes, Rosemary Sanozky-Dawes, Emily DeCrescenzo Henriksen, Rodolphe Barrangou, Todd R Klaenhammer
Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli. Applied and environmental microbiology 82 (1) (2015)