J Formula See Text Rg Menche (Jörg Menche)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 34

Top Venues

Nature communications

Nature computational science

NPJ systems biology and applications

Nature genetics

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Max-Planck-Institut für Kolloid- und Grenzflächenforschung (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Austria

Principal Investigator

DZZOM

Hungary

Co-founder

Electric Ant Lab

Netherlands

Co-founder

Central European University - CEU

Hungary

Postdoctoral research associate :: Center for Network Science

Northeastern University

United States

Postdoctoral research associate :: Center for Complex Network Research

Dana Farber Cancer Institute

United States

Postdoctoral research associate

Education History

Max-Planck-Institut für Kolloid- und Grenzflächenforschung

Germany

PHD :: Theory and Biosystems

Publications

Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P Wytock, István A Kovács, Olivér M Balogh, Bettina Benczik, Mátyás Pétervári, Bence Agg, Péter Ferdinandy, Loan Vulliard, J Formula See Text Rg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu
Assessment of community efforts to advance network-based prediction of protein-protein interactions. Nature communications 14 (1) (2023)
Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P Wytock, István A Kovács, Olivér M Balogh, Bettina Benczik, Mátyás Pétervári, Bence Agg, Péter Ferdinandy, Loan Vulliard, J Formula See Text Rg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu
Assessment of community efforts to advance network-based prediction of protein-protein interactions. Nature communications 14 (1) (2023)
Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P Wytock, István A Kovács, Olivér M Balogh, Bettina Benczik, Mátyás Pétervári, Bence Agg, Péter Ferdinandy, Loan Vulliard, J Formula See Text Rg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu
Assessment of community efforts to advance network-based prediction of protein-protein interactions. Nature communications 14 (1) (2023)
Julia Pazmandi, Sevgi Köstel Bal, Salvo Danilo Lombardo, Felix M Formula See Text Ller, Celine Sin, Christiane V R H Formula See Text Tter, J Formula See Text Rg Menche, Kaan Boztug
AutoCore: A network-based definition of the core module of human autoimmunity and autoinflammation. Science advances 9 (35) (2023)
Christiane V R Hütter, Celine Sin, Felix Müller, J Formula See Text Rg Menche
Network cartographs for interpretable visualizations. Nature computational science 2 (2) (2022)
Christiane V R Hütter, Celine Sin, Felix Müller, J Formula See Text Rg Menche
Network cartographs for interpretable visualizations. Nature computational science 2 (2) (2022)
Christiane V R Hütter, Celine Sin, Felix Müller, J Formula See Text Rg Menche
Network cartographs for interpretable visualizations. Nature computational science 2 (2) (2022)
Christiane V R Hütter, Celine Sin, Felix Müller, J Formula See Text Rg Menche
Network cartographs for interpretable visualizations. Nature computational science 2 (2) (2022)
Elisabeth Salzer, Samaneh Zoghi, Máté G Kiss, Frieda Kage, Christina Rashkova, Stephanie Stahnke, Matthias Haimel, René Platzer, Michael Caldera, Rico Chandra Ardy, Birgit Hoeger, Jana Block, David Medgyesi, Celine Sin, Sepideh Shahkarami, Renate Kain, Vahid Ziaee, Peter Hammerl, Christoph Bock, J Formula See Text Rg Menche, Loïc Dupré, Johannes B Huppa, Michael Sixt, Alexis J Lomakin, Klemens Rottner, Christoph J Binder, Theresia E B Stradal, Nima Rezaei, Kaan Boztug
The cytoskeletal regulator HEM1 governs B cell development and prevents autoimmunity. Science immunology 5 (49) (2022)
Salvo Danilo Lombardo, Ivan Fernando Wangsaputra, J Formula See Text Rg Menche, Adam Stevens
Network Approaches for Charting the Transcriptomic and Epigenetic Landscape of the Developmental Origins of Health and Disease. Genes 13 (5) (2022)
Harald H H W Schmidt, J Formula See Text Rg Menche
The regulatory network architecture of cardiometabolic diseases. Nature genetics 54 (1) (2022)
Sebastian Pirch, Felix Müller, Eugenia Iofinova, Julia Pazmandi, Christiane V R Hütter, Martin Chiettini, Celine Sin, Kaan Boztug, Iana Podkosova, Hannes Kaufmann, J Formula See Text Rg Menche
The VRNetzer platform enables interactive network analysis in Virtual Reality. Nature communications 12 (1) (2021)
Fabián Amaya-García, Michael Caldera, Anna Koren, Stefan Kubicek, J Formula See Text Rg Menche, Miriam M Unterlass
Green Hydrothermal Synthesis of Fluorescent 2,3-Diarylquinoxalines and Large-Scale Computational Comparison to Existing Alternatives. ChemSusChem 14 (8) (2021)
Fabián Amaya-García, Michael Caldera, Anna Koren, Stefan Kubicek, J Formula See Text Rg Menche, Miriam M Unterlass
Green Hydrothermal Synthesis of Fluorescent 2,3-Diarylquinoxalines and Large-Scale Computational Comparison to Existing Alternatives. ChemSusChem 14 (8) (2021)
Marianne Lahnsteiner, Michael Caldera, Hipassia M Moura, D Alonso Cerrón-Infantes, Jérôme Roeser, Thomas Konegger, Arne Thomas, J Formula See Text Rg Menche, Miriam M Unterlass
Hydrothermal polymerization of porous aromatic polyimide networks and machine learning-assisted computational morphology evolution interpretation. Journal of materials chemistry. A 9 (35) (2021)
Pisanu Buphamalai, Tomislav Kokotovic, Vanja Nagy, J Formula See Text Rg Menche
Network analysis reveals rare disease signatures across multiple levels of biological organization. Nature communications 12 (1) (2021)
Julia S Brunner, Loan Vulliard, Melanie Hofmann, Markus Kieler, Alexander Lercher, Andrea Vogel, Marion Russier, Johanna B Brüggenthies, Martina Kerndl, Victoria Saferding, Birgit Niederreiter, Alexandra Junza, Annika Frauenstein, Carina Scholtysek, Yohei Mikami, Kristaps Klavins, Gerhard Krönke, Andreas Bergthaler, John J O'Shea, Thomas Weichhart, Rüdiger Klein, Josef S Smolen, Paul Cheng, Óscar Yanes, J Formula See Text Rg Menche, Peter J Murray, Omar Sharif, Stephan Blüml, Gernot Schabbauer
Environmental arginine controls multinuclear giant cell metabolism and formation. Nature communications 11 (1) (2020)
Julia S Brunner, Andrea Vogel, Alexander Lercher, Michael Caldera, Ana Korosec, Marlene Pühringer, Melanie Hofmann, Alexander Hajto, Markus Kieler, Lucia Quemada Garrido, Martina Kerndl, Mario Kuttke, Ildiko Mesteri, Maria Wiktoria Górna, Marta Kulik, Paulina Maria Dominiak, Amanda E Brandon, Emma Estevez, Casey L Egan, Florian Gruber, Martina Schweiger, J Formula See Text Rg Menche, Andreas Bergthaler, Thomas Weichhart, Kristaps Klavins, Mark A Febbraio, Omar Sharif, Gernot Schabbauer
The PI3K pathway preserves metabolic health through MARCO-dependent lipid uptake by adipose tissue macrophages. Nature metabolism 2 (12) (2020)
Vanja Nagy, Ronja Hollstein, Tsung-Pin Pai, Michel K Herde, Pisanu Buphamalai, Paul Moeseneder, Ewelina Lenartowicz, Anoop Kavirayani, Georg Christoph Korenke, Ivona Kozieradzki, Roberto Nitsch, Ana Cicvaric, Francisco J Monje Quiroga, Matthew A Deardorff, Emma C Bedoukian, Yun Li, Gökhan Yigit, J Formula See Text Rg Menche, E Ferda Perçin, Bernd Wollnik, Christian Henneberger, Frank J Kaiser, Josef M Penninger
HACE1 deficiency leads to structural and functional neurodevelopmental defects. Neurology. Genetics 5 (3) (2019)
Fiorella Schischlik, Roland Jäger, Felix Rosebrock, Eva Hug, Michael K Schuster, Raimund Holly, Elisabeth Fuchs, Jelena D M Feenstra, Edith Bogner, Bettina Gisslinger, Martin Schalling, Elisa Rumi, Daniela Pietra, Gottfried Fischer, Ingrid Fae, Loan Vulliard, J Formula See Text Rg Menche, Torsten Haferlach, Manja Meggendorfer, Anna Stengel, Christoph Bock, Mario Cazzola, Heinz Gisslinger, Robert Kralovics
Mutational landscape of the transcriptome offers putative targets for immunotherapy of myeloproliferative neoplasms. Blood 134 (2) (2019)
Sandra Schick, André Figueiredo Rendeiro, Kathrin Runggatscher, Anna Ringler, Bernd Boidol, Melanie Hinkel, Peter Májek, Loan Vulliard, Thomas Penz, Katja Parapatics, Christian Schmidl, J Formula See Text Rg Menche, Guido Boehmelt, Mark Petronczki, André C Müller, Christoph Bock, Stefan Kubicek
Systematic characterization of BAF mutations provides insights into intracomplex synthetic lethalities in human cancers. Nature genetics 51 (9) (2019)
Michael Caldera, Felix Müller, Isabel Kaltenbrunner, Marco P Licciardello, Charles-Hugues Lardeau, Stefan Kubicek, J Formula See Text Rg Menche
Mapping the perturbome network of cellular perturbations. Nature communications 10 (1) (2019)
Sara Sdelci, André Figueiredo Rendeiro, Philipp Rathert, Wanhui You, Jung-Ming G Lin, Anna Ringler, Gerald Hofstätter, Herwig P Moll, Bettina Gürtl, Matthias Farlik, Sandra Schick, Freya Klepsch, Matthew Oldach, Pisanu Buphamalai, Fiorella Schischlik, Peter Májek, Katja Parapatics, Christian Schmidl, Michael K Schuster, Thomas Penz, Dennis L Buckley, Otto Hudecz, Richard Imre, Shuang-Yan Wang, Hans Michael Maric, Robert Kralovics, Keiryn L Bennett, Andre C Müller, Karl Mechtler, J Formula See Text Rg Menche, James E Bradner, Georg E Winter, Kristaps Klavins, Emilio Casanova, Christoph Bock, Johannes Zuber, Stefan Kubicek
MTHFD1 interaction with BRD4 links folate metabolism to transcriptional regulation. Nature genetics 51 (6) (2019)
Georgia Velimezi, Lydia Robinson-Garcia, Francisco Muñoz-Martínez, Wouter W Wiegant, Joana Ferreira da Silva, Michel Owusu, Martin Moder, Marc Wiedner, Sara Brin Rosenthal, Kathleen M Fisch, Jason Moffat, J Formula See Text Rg Menche, Haico van Attikum, Stephen P Jackson, Joanna I Loizou
Map of synthetic rescue interactions for the Fanconi anemia DNA repair pathway identifies USP48. Nature communications 9 (1) (2018)
Friederike Langhauser, Ana I Casas, Vu-Thao-Vi Dao, Emre Guney, J Formula See Text Rg Menche, Eva Geuss, Pamela W M Kleikers, Manuela G López, Albert-L Barabási, Christoph Kleinschnitz, Harald H H W Schmidt
A diseasome cluster-based drug repurposing of soluble guanylate cyclase activators from smooth muscle relaxation to direct neuroprotection. NPJ systems biology and applications 4 (2018)
Andreas Bergthaler, J Formula See Text Rg Menche
The immune system as a social network. Nature immunology 18 (5) (2018)
Amitabh Sharma, Arda Halu, Julius L Decano, Megha Padi, Yang-Yu Liu, Rashmi B Prasad, Joao Fadista, Marc Santolini, J Formula See Text Rg Menche, Scott T Weiss, Marc Vidal, Edwin K Silverman, Masanori Aikawa, Albert-László Barabási, Leif C Groop, Joseph Loscalzo
Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes. NPJ systems biology and applications 4 (2018)
Joaquim Aguirre-Plans, Janet Piñero, J Formula See Text Rg Menche, Ferran Sanz, Laura I Furlong, Harald H H W Schmidt, Baldo Oliva, Emre Guney
Proximal Pathway Enrichment Analysis for Targeting Comorbid Diseases via Network Endopharmacology. Pharmaceuticals (Basel, Switzerland) 11 (3) (2018)
J Formula See Text Rg Menche, Emre Guney, Amitabh Sharma, Patrick J Branigan, Matthew J Loza, Frédéric Baribaud, Radu Dobrin, Albert-László Barabási
Integrating personalized gene expression profiles into predictive disease-associated gene pools. NPJ systems biology and applications 3 (2017)
Martin Moder, Georgia Velimezi, Michel Owusu, Abdelghani Mazouzi, Marc Wiedner, Joana Ferreira da Silva, Lydia Robinson-Garcia, Fiorella Schischlik, Rastislav Slavkovsky, Robert Kralovics, Michael Schuster, Christoph Bock, Trey Ideker, Stephen P Jackson, J Formula See Text Rg Menche, Joanna I Loizou
Parallel genome-wide screens identify synthetic viable interactions between the BLM helicase complex and Fanconi anemia. Nature communications 8 (1) (2017)
Kseniya Khamina, Alexander Lercher, Michael Caldera, Christopher Schliehe, Bojan Vilagos, Mehmet Sahin, Lindsay Kosack, Anannya Bhattacharya, Peter Májek, Alexey Stukalov, Roberto Sacco, Leo C James, Daniel D Pinschewer, Keiryn L Bennett, J Formula See Text Rg Menche, Andreas Bergthaler
Characterization of host proteins interacting with the lymphocytic choriomeningitis virus L protein. PLoS pathogens 13 (12) (2017)
Marco P Licciardello, Anna Ringler, Patrick Markt, Freya Klepsch, Charles-Hugues Lardeau, Sara Sdelci, Erika Schirghuber, André C Müller, Michael Caldera, Anja Wagner, Rebecca Herzog, Thomas Penz, Michael Schuster, Bernd Boidol, Gerhard Dürnberger, Yasin Folkvaljon, Pär Stattin, Vladimir Ivanov, Jacques Colinge, Christoph Bock, Klaus Kratochwill, J Formula See Text Rg Menche, Keiryn L Bennett, Stefan Kubicek
A combinatorial screen of the CLOUD uncovers a synergy targeting the androgen receptor. Nature chemical biology 13 (7) (2017)
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, J Formula See Text Rg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert-László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
An inter-species protein-protein interaction network across vast evolutionary distance. Molecular systems biology 12 (4) (2016)
Michael Hawrylycz, Jeremy A Miller, Vilas Menon, David Feng, Tim Dolbeare, Angela L Guillozet-Bongaarts, Anil G Jegga, Bruce J Aronow, Chang-Kyu Lee, Amy Bernard, Matthew F Glasser, Donna L Dierker, J Formula See Text Rg Menche, Aaron Szafer, Forrest Collman, Pascal Grange, Kenneth A Berman, Stefan Mihalas, Zizhen Yao, Lance Stewart, Albert-László Barabási, Jay Schulkin, John Phillips, Lydia Ng, Chinh Dang, David R Haynor, Allan Jones, David C Van Essen, Christof Koch, Ed Lein
Canonical genetic signatures of the adult human brain. Nature neuroscience 18 (12) (2015)

J Formula See Text Rg Menche.css-eqlu8i{font-size:small;padding-left:4px;} (Jörg Menche)

Publication Activity (10 Years)

Top Topics

Top Venues

J Formula See Text Rg Menche (Jörg Menche)