Joshua F McMichael (Joshua McMichael)

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 10

Top Topics

Multiple Myeloma

Dna Methylation

Top Venues

Nature communications

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Matthew Cannon, James Stevenson, Kathryn Stahl, Rohit Basu, Adam C Coffman, Susanna Kiwala, Joshua F McMichael, Kori Kuzma, Dorian Morrissey, Kelsy C Cotto, Elaine R Mardis, Malachi Griffith, Malachi Griffith, Alex H Wagner
DGIdb 5.0: rebuilding the drug-gene interaction database for precision medicine and drug discovery platforms. Nucleic acids research (2023)
Felicia Gomez, Bryan Fisk, Joshua F McMichael, Matthew Mosior, Jennifer A Foltz, Zachary L Skidmore, Eric J Duncavage, Christopher A Miller, Haley J Abel, Yi-Shan Lee, Kilannin Krysiak, David A Russler-Germain, Marcus P Watkins, Cody A Ramirez, Alina D Schmidt, Fernanda Martins Rodrigues, Lee Trani, Ajay Khanna, Julia A Wagner, Robert S Fulton, Catrina C Fronick, Michelle D O'Laughlin, Timothy Schappe, Amanda F Cashen, Neha Mehta-Shah, Brad S Kahl, Jason R Walker, Nancy L Bartlett, Malachi Griffith, Todd A Fehniger, Malachi Griffith
Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma. Cancer research communications (2023)
Kelsy C Cotto, Yang-Yang Feng, Avinash Ramu, Megan M Richters, Sharon L Freshour, Zachary L Skidmore, Huiming Xia, Joshua F McMichael, Jason Kunisaki, Katie M Campbell, Timothy Hung-Po Chen, Emily B Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C Chapman, Christopher A Maher, Vivek K Arora, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Malachi Griffith, Malachi Griffith
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer. Nature communications 14 (1) (2023)
Huiming Xia, Joshua F McMichael, Michelle Becker-Hapak, Onyinyechi C Onyeador, Rico Buchli, Ethan McClain, Patrick Pence, Suangson Supabphol, Megan M Richters, Anamika Basu, Cody A Ramirez, Cristina Puig-Saus, Kelsy C Cotto, Sharon L Freshour, Jasreet Hundal, Susanna Kiwala, S Peter Goedegebuure, Tanner M Johanns, Gavin P Dunn, Antoni Ribas, Christopher A Miller, William E Gillanders, Todd A Fehniger, Malachi Griffith, Malachi Griffith
Computational prediction of MHC anchor locations guides neoantigen identification and prioritization. Science immunology 8 (82) (2023)
Kelsy C Cotto, Yang-Yang Feng, Avinash Ramu, Megan M Richters, Sharon L Freshour, Zachary L Skidmore, Huiming Xia, Joshua F McMichael, Jason Kunisaki, Katie M Campbell, Timothy Hung-Po Chen, Emily B Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C Chapman, Christopher A Maher, Vivek K Arora, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Malachi Griffith, Malachi Griffith
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer. Nature communications 14 (1) (2023)
Kelsy C Cotto, Yang-Yang Feng, Avinash Ramu, Megan M Richters, Sharon L Freshour, Zachary L Skidmore, Huiming Xia, Joshua F McMichael, Jason Kunisaki, Katie M Campbell, Timothy Hung-Po Chen, Emily B Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C Chapman, Christopher A Maher, Vivek K Arora, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Malachi Griffith, Malachi Griffith
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer. Nature communications 14 (1) (2023)
Daniel Cui Zhou, Reyka G Jayasinghe, Siqi Chen, John M Herndon, Michael D Iglesia, Pooja Navale, Michael C Wendl, Wagma Caravan, Kazuhito Sato, Erik Storrs, Chia-Kuei Mo, Jingxian Liu, Austin N Southard-Smith, Yige Wu, Nataly Naser Al Deen, John M Baer, Robert S Fulton, Matthew A Wyczalkowski, Ruiyang Liu, Catrina C Fronick, Lucinda A Fulton, Andrew Shinkle, Lisa Thammavong, Houxiang Zhu, Hua Sun, Liang-Bo Wang, Yize Li, Chong Zuo, Joshua F McMichael, Sherri R Davies, Elizabeth L Appelbaum, Keenan J Robbins, Sara E Chasnoff, Xiaolu Yang, Ashley N Reeb, Clara Oh, Mamatha Serasanambati, Preet Lal, Rajees Varghese, Jay R Mashl, Jennifer Ponce, Nadezhda V Terekhanova, Lijun Yao, Fang Wang, Lijun Chen, Michael Schnaubelt, Rita Jui-Hsien Lu, Julie K Schwarz, Sidharth V Puram, Albert H Kim, Sheng-Kwei Song, Kooresh I Shoghi, Ken S Lau, Tao Ju, Ken Chen, Deyali Chatterjee, William G Hawkins, Hui Zhang, Samuel Achilefu, Milan G Chheda, Stephen T Oh, William E Gillanders, Feng Chen, David G DeNardo, Ryan C Fields, Li Ding
Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer. Nature genetics 54 (9) (2022)
Kilannin Krysiak, Arpad M Danos, Susanna Kiwala, Joshua F McMichael, Adam C Coffman, Erica K Barnell, Lana Sheta, Jason Saliba, Cameron J Grisdale, Lynzey Kujan, Shahil Pema, Jake Lever, Nicholas C Spies, Andreea Chiorean, Damian T Rieke, Kaitlin A Clark, Payal Jani, Hideaki Takahashi, Peter Horak, Deborah I Ritter, Xin Zhou, Benjamin J Ainscough, Sean Delong, Mario Lamping, Alex R Marr, Brian V Li, Wan-Hsin Lin, Panieh Terraf, Yasser Salama, Katie M Campbell, Kirsten M Farncombe, Jianling Ji, Xiaonan Zhao, Xinjie Xu, Rashmi Kanagal-Shamana, Kelsy C Cotto, Zachary L Skidmore, Jason R Walker, Jinghui Zhang, Aleksandar Milosavljevic, Ronak Y Patel, Rachel H Giles, Raymond H Kim, Lynn M Schriml, Elaine R Mardis, Steven J M Jones, Gordana Raca, Shruti Rao, Subha Madhavan, Alex H Wagner, Malachi Griffith, Malachi Griffith
A community approach to the cancer-variant-interpretation bottleneck. Nature cancer 3 (5) (2022)
Ting Wang, Lucinda Antonacci-Fulton, Kerstin Howe, Heather A Lawson, Julian K Lucas, Adam M Phillippy, Alice B Popejoy, Mobin Asri, Caryn Carson, Mark J P Chaisson, Xian Chang, Robert Cook-Deegan, Adam L Felsenfeld, Robert S Fulton, Erik P Garrison, Nanibaa' A Garrison, Tina A Graves-Lindsay, Hanlee P Ji, Eimear E Kenny, Barbara A Koenig, Daofeng Li, Tobias Marschall, Joshua F McMichael, Adam M Novak, Deepak Purushotham, Valerie A Schneider, Baergen I Schultz, Michael W Smith, Heidi J Sofia, Tsachy Weissman, Paul Flicek, Heng Li, Karen H Miga, Benedict Paten, Erich D Jarvis, Ira M Hall, Evan E Eichler, David Haussler, null null
The Human Pangenome Project: a global resource to map genomic diversity. Nature 604 (7906) (2022)
Ruiyang Liu, Qingsong Gao, Steven M Foltz, Jared S Fowles, Lijun Yao, Julia Tianjiao Wang, Song Cao, Hua Sun, Michael C Wendl, Sunantha Sethuraman, Amila Weerasinghe, Michael P Rettig, Erik P Storrs, Christopher J Yoon, Matthew A Wyczalkowski, Joshua F McMichael, Daniel R Kohnen, Justin King, Scott R Goldsmith, Julie O'Neal, Robert S Fulton, Catrina C Fronick, Timothy J Ley, Reyka G Jayasinghe, Mark A Fiala, Stephen T Oh, John F Dipersio, Ravi Vij, Li Ding
Co-evolution of tumor and immune cells during progression of multiple myeloma. Nature communications 12 (1) (2021)