Malachi Griffith (O Griffith, Obi L Griffith)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 59

Top Venues

Blood advances

Nature communications

Genome research

Nucleic acids research

Washington University in Saint Louis

University of British Columbia (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Washington University in Saint Louis Jul 01 2019

United States

Associate Professor :: Medicine (Oncology)

Washington University in Saint Louis Sep 02 2014 - Jun 30 2019

United States

Assistant Professor :: Medicine (Oncology)

Education History

University of British Columbia

Canada

PHD :: Medical Genetics

Publications

Cody A Ramirez, Michelle Becker-Hapak, Kartik Singhal, David A Russler-Germain, Felix E Frenkel, Erica K Barnell, Ethan D McClain, Sweta Desai, Timothy Schappe, Onyinyechi C Onyeador, Olga Mikhaylovna Plotnikova, Vladislav Belousov, Alexander V Bagaev, Elena Ocheredko, Susanna Kiwala, Jasreet Hundal, Zachary L Skidmore, Marcus P Watkins, Thomas B Mooney, Jason R Walker, Kilannin Krysiak, Felicia Gomez, Catrina C Fronick, Robert S Fulton, Robert D Schreiber, Neha Mehta-Shah, Amanda F Cashen, Brad S Kahl, Ravshan I Ataullakhanov, Nancy L Bartlett, Malachi Griffith, Malachi Griffith, Todd A Fehniger
Neoantigen landscape supports feasibility of personalized cancer vaccine for follicular lymphoma. Blood advances 8 (15) (2024)
Cody A Ramirez, Michelle Becker-Hapak, Kartik Singhal, David A Russler-Germain, Felix E Frenkel, Erica K Barnell, Ethan McClain, Sweta Desai, Timothy Schappe, Onyinyechi C Onyeador, Olga Mikhaylovna Plotnikova, Vladislav Belousov, Alexander V Bagaev, Elena Ocheredko, Susanna Kiwala, Jasreet Hundal, Zachary L Skidmore, Marcus P Watkins, Thomas B Mooney, Jason R Walker, Kilannin Krysiak, Felicia Gomez, Catrina C Fronick, Robert S Fulton, Robert D Schreiber, Neha Mehta-Shah, Amanda F Cashen, Brad S Kahl, Ravshan I Ataullakhanov, Nancy L Bartlett, Malachi Griffith, Malachi Griffith, Todd A Fehniger
Neoantigen Landscape Supports Feasibility of Personalized Cancer Vaccine for Follicular Lymphoma. Blood advances (2024)
Cody A Ramirez, Michelle Becker-Hapak, Kartik Singhal, David A Russler-Germain, Felix E Frenkel, Erica K Barnell, Ethan D McClain, Sweta Desai, Timothy Schappe, Onyinyechi C Onyeador, Olga Mikhaylovna Plotnikova, Vladislav Belousov, Alexander V Bagaev, Elena Ocheredko, Susanna Kiwala, Jasreet Hundal, Zachary L Skidmore, Marcus P Watkins, Thomas B Mooney, Jason R Walker, Kilannin Krysiak, Felicia Gomez, Catrina C Fronick, Robert S Fulton, Robert D Schreiber, Neha Mehta-Shah, Amanda F Cashen, Brad S Kahl, Ravshan I Ataullakhanov, Nancy L Bartlett, Malachi Griffith, Malachi Griffith, Todd A Fehniger
Neoantigen landscape supports feasibility of personalized cancer vaccine for follicular lymphoma. Blood advances 8 (15) (2024)
Cody A Ramirez, Michelle Becker-Hapak, Kartik Singhal, David A Russler-Germain, Felix E Frenkel, Erica K Barnell, Ethan McClain, Sweta Desai, Timothy Schappe, Onyinyechi C Onyeador, Olga Mikhaylovna Plotnikova, Vladislav Belousov, Alexander V Bagaev, Elena Ocheredko, Susanna Kiwala, Jasreet Hundal, Zachary L Skidmore, Marcus P Watkins, Thomas B Mooney, Jason R Walker, Kilannin Krysiak, Felicia Gomez, Catrina C Fronick, Robert S Fulton, Robert D Schreiber, Neha Mehta-Shah, Amanda F Cashen, Brad S Kahl, Ravshan I Ataullakhanov, Nancy L Bartlett, Malachi Griffith, Malachi Griffith, Todd A Fehniger
Neoantigen Landscape Supports Feasibility of Personalized Cancer Vaccine for Follicular Lymphoma. Blood advances (2024)
My H Hoang, Zachary L Skidmore, Hans Rindt, Shirley Chu, Bryan Fisk, Jennifer A Foltz, Catrina Fronick, Robert Fulton, Mingyi Zhou, Nathan J Bivens, Carol N Reinero, Todd A Fehniger, Malachi Griffith, Jeffrey N Bryan, Malachi Griffith
Single-cell T-cell receptor repertoire profiling in dogs. Communications biology 7 (1) (2024)
My H Hoang, Zachary L Skidmore, Hans Rindt, Shirley Chu, Bryan Fisk, Jennifer A Foltz, Catrina Fronick, Robert Fulton, Mingyi Zhou, Nathan J Bivens, Carol N Reinero, Todd A Fehniger, Malachi Griffith, Jeffrey N Bryan, Malachi Griffith
Single-cell T-cell receptor repertoire profiling in dogs. Communications biology 7 (1) (2024)
D A Rauch, P Valiño Ramos, M Khanfar, J Harding, Ancy Joseph, Malachi Griffith, M Griffith, Lee Ratner
Single-Cell Transcriptomic Analysis of Kaposi Sarcoma. bioRxiv : the preprint server for biology (2024)
Jennifer A Foltz, Jennifer Tran, Pamela Wong, Changxu Fan, Evelyn Schmidt, Bryan Fisk, Michelle Becker-Hapak, David A Russler-Germain, Jeanette A I Johnson, Nancy D Marin, Celia C Cubitt, Patrick Pence, Joseph Rueve, Sushanth Pureti, Kimberly Hwang, Feng Gao, Alice Y Zhou, Mark Foster, Timothy Schappe, Lynne Marsala, Melissa M Berrien-Elliott, Amanda F Cashen, Jeffrey J Bednarski, Elana J Fertig, Malachi Griffith, Malachi Griffith, Ting Wang, Allegra A Petti, Todd A Fehniger
Cytokines drive the formation of memory-like NK cell subsets via epigenetic rewiring and transcriptional regulation. Science immunology 9 (96) (2024)
My H Hoang, Zachary L Skidmore, Hans Rindt, Shirley Chu, Bryan Fisk, Jennifer A Foltz, Catrina Fronick, Robert Fulton, Mingyi Zhou, Nathan J Bivens, Carol N Reinero, Todd A Fehniger, Malachi Griffith, Jeffrey N Bryan, Malachi Griffith
Single-cell T-cell receptor repertoire profiling in dogs. Communications biology 7 (1) (2024)
Cody A Ramirez, Michelle Becker-Hapak, Kartik Singhal, David A Russler-Germain, Felix E Frenkel, Erica K Barnell, Ethan D McClain, Sweta Desai, Timothy Schappe, Onyinyechi C Onyeador, Olga Mikhaylovna Plotnikova, Vladislav Belousov, Alexander V Bagaev, Elena Ocheredko, Susanna Kiwala, Jasreet Hundal, Zachary L Skidmore, Marcus P Watkins, Thomas B Mooney, Jason R Walker, Kilannin Krysiak, Felicia Gomez, Catrina C Fronick, Robert S Fulton, Robert D Schreiber, Neha Mehta-Shah, Amanda F Cashen, Brad S Kahl, Ravshan I Ataullakhanov, Nancy L Bartlett, Malachi Griffith, Malachi Griffith, Todd A Fehniger
Neoantigen landscape supports feasibility of personalized cancer vaccine for follicular lymphoma. Blood advances 8 (15) (2024)
Cody A Ramirez, Michelle Becker-Hapak, Kartik Singhal, David A Russler-Germain, Felix E Frenkel, Erica K Barnell, Ethan D McClain, Sweta Desai, Timothy Schappe, Onyinyechi C Onyeador, Olga Mikhaylovna Plotnikova, Vladislav Belousov, Alexander V Bagaev, Elena Ocheredko, Susanna Kiwala, Jasreet Hundal, Zachary L Skidmore, Marcus P Watkins, Thomas B Mooney, Jason R Walker, Kilannin Krysiak, Felicia Gomez, Catrina C Fronick, Robert S Fulton, Robert D Schreiber, Neha Mehta-Shah, Amanda F Cashen, Brad S Kahl, Ravshan I Ataullakhanov, Nancy L Bartlett, Malachi Griffith, Malachi Griffith, Todd A Fehniger
Neoantigen landscape supports feasibility of personalized cancer vaccine for follicular lymphoma. Blood advances 8 (15) (2024)
My H Hoang, Zachary L Skidmore, Hans Rindt, Shirley Chu, Bryan Fisk, Jennifer A Foltz, Catrina Fronick, Robert Fulton, Mingyi Zhou, Nathan J Bivens, Carol N Reinero, Todd A Fehniger, Malachi Griffith, Jeffrey N Bryan, Malachi Griffith
Single-cell T-cell receptor repertoire profiling in dogs. Communications biology 7 (1) (2024)
Matthew Cannon, James Stevenson, Kathryn Stahl, Rohit Basu, Adam C Coffman, Susanna Kiwala, Joshua F McMichael, Kori Kuzma, Dorian Morrissey, Kelsy C Cotto, Elaine R Mardis, Malachi Griffith, Malachi Griffith, Alex H Wagner
DGIdb 5.0: rebuilding the drug-gene interaction database for precision medicine and drug discovery platforms. Nucleic acids research (2023)
Felicia Gomez, Bryan Fisk, Joshua F McMichael, Matthew Mosior, Jennifer A Foltz, Zachary L Skidmore, Eric J Duncavage, Christopher A Miller, Haley J Abel, Yi-Shan Lee, Kilannin Krysiak, David A Russler-Germain, Marcus P Watkins, Cody A Ramirez, Alina D Schmidt, Fernanda Martins Rodrigues, Lee Trani, Ajay Khanna, Julia A Wagner, Robert S Fulton, Catrina C Fronick, Michelle D O'Laughlin, Timothy Schappe, Amanda F Cashen, Neha Mehta-Shah, Brad S Kahl, Jason R Walker, Nancy L Bartlett, Malachi Griffith, Todd A Fehniger, Malachi Griffith
Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma. Cancer research communications (2023)
Matthew Cannon, James Stevenson, Kori Kuzma, Susanna Kiwala, Jeremy L Warner, Malachi Griffith, Malachi Griffith, Alex H Wagner
Normalization of drug and therapeutic concepts with Thera-Py. JAMIA open 6 (4) (2023)
Sharon L Freshour, Timothy H P Chen, Bryan Fisk, Haolin Shen, Matthew Mosior, Zachary L Skidmore, Catrina C Fronick, Jennifer K Bolzenius, Malachi Griffith, Vivek K Arora, Malachi Griffith
Endothelial cells are a key target of IFN-g during response to combined PD-1/CTLA-4 ICB treatment in a mouse model of bladder cancer. bioRxiv : the preprint server for biology (2023)
Kelsy C Cotto, Yang-Yang Feng, Avinash Ramu, Megan M Richters, Sharon L Freshour, Zachary L Skidmore, Huiming Xia, Joshua F McMichael, Jason Kunisaki, Katie M Campbell, Timothy Hung-Po Chen, Emily B Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C Chapman, Christopher A Maher, Vivek K Arora, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Malachi Griffith, Malachi Griffith
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer. Nature communications 14 (1) (2023)
Huiming Xia, Joshua F McMichael, Michelle Becker-Hapak, Onyinyechi C Onyeador, Rico Buchli, Ethan McClain, Patrick Pence, Suangson Supabphol, Megan M Richters, Anamika Basu, Cody A Ramirez, Cristina Puig-Saus, Kelsy C Cotto, Sharon L Freshour, Jasreet Hundal, Susanna Kiwala, S Peter Goedegebuure, Tanner M Johanns, Gavin P Dunn, Antoni Ribas, Christopher A Miller, William E Gillanders, Todd A Fehniger, Malachi Griffith, Malachi Griffith
Computational prediction of MHC anchor locations guides neoantigen identification and prioritization. Science immunology 8 (82) (2023)
Cristina Puig-Saus, Barbara Sennino, Songming Peng, Clifford L Wang, Zheng Pan, Benjamin Yuen, Bhamini Purandare, Duo An, Boi B Quach, Diana Nguyen, Huiming Xia, Sameeha Jilani, Kevin Shao, Claire McHugh, John Greer, Phillip Peabody, Saparya Nayak, Jonathan Hoover, Sara Said, Kyle Jacoby, Olivier Dalmas, Susan P Foy, Andrew Conroy, Michael C Yi, Christine Shieh, William Lu, Katharine Heeringa, Yan Ma, Shahab Chizari, Melissa J Pilling, Marc Ting, Ramya Tunuguntla, Salemiz Sandoval, Robert Moot, Theresa Hunter, Sidi Zhao, Justin D Saco, Ivan Perez-Garcilazo, Egmidio Medina, Agustin Vega-Crespo, Ignacio Baselga-Carretero, Gabriel Abril-Rodriguez, Grace Cherry, Deborah J Wong, Jasreet Hundal, Bartosz Chmielowski, Daniel E Speiser, Michael T Bethune, Xiaoyan R Bao, Alena Gros, Malachi Griffith, Malachi Griffith, James R Heath, Alex Franzusoff, Stefanie J Mandl, Antoni Ribas
Neoantigen-targeted CD8 + T cell responses with PD-1 blockade therapy. Nature 615 (7953) (2023)
Cristina Puig-Saus, Barbara Sennino, Songming Peng, Clifford L Wang, Zheng Pan, Benjamin Yuen, Bhamini Purandare, Duo An, Boi B Quach, Diana Nguyen, Huiming Xia, Sameeha Jilani, Kevin Shao, Claire McHugh, John Greer, Phillip Peabody, Saparya Nayak, Jonathan Hoover, Sara Said, Kyle Jacoby, Olivier Dalmas, Susan P Foy, Andrew Conroy, Michael C Yi, Christine Shieh, William Lu, Katharine Heeringa, Yan Ma, Shahab Chizari, Melissa J Pilling, Marc Ting, Ramya Tunuguntla, Salemiz Sandoval, Robert Moot, Theresa Hunter, Sidi Zhao, Justin D Saco, Ivan Perez-Garcilazo, Egmidio Medina, Agustin Vega-Crespo, Ignacio Baselga-Carretero, Gabriel Abril-Rodriguez, Grace Cherry, Deborah J Wong, Jasreet Hundal, Bartosz Chmielowski, Daniel E Speiser, Michael T Bethune, Xiaoyan R Bao, Alena Gros, Malachi Griffith, Malachi Griffith, James R Heath, Alex Franzusoff, Stefanie J Mandl, Antoni Ribas
Neoantigen-targeted CD8 + T cell responses with PD-1 blockade therapy. Nature 615 (7953) (2023)
David A Russler-Germain, Kilannin Krysiak, Cody A Ramirez, Matthew Mosior, Marcus P Watkins, Felicia Gomez, Zachary L Skidmore, Lee Trani, Feng Gao, Susan Geyer, Amanda F Cashen, Neha Mehta-Shah, Brad S Kahl, Nancy L Bartlett, Juan Pablo Alderuccio, Izidore S Lossos, Sarah L Ondrejka, Eric D Hsi, Peter Martin, John P Leonard, Malachi Griffith, Malachi Griffith, Todd A Fehniger
Mutations Associated with Progression in Follicular Lymphoma Predict Inferior Outcomes at Diagnosis (Alliance A151303). Blood advances (2023)
Kartik Singhal, Marcus P Watkins, Todd A Fehniger, Malachi Griffith, Malachi Griffith, Brad S Kahl, David A Russler-Germain
Donor-Derived Follicular Lymphoma After Kidney Transplantation: A Case Report. JCO precision oncology 7 (2023)
Kelsy C Cotto, Yang-Yang Feng, Avinash Ramu, Megan M Richters, Sharon L Freshour, Zachary L Skidmore, Huiming Xia, Joshua F McMichael, Jason Kunisaki, Katie M Campbell, Timothy Hung-Po Chen, Emily B Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C Chapman, Christopher A Maher, Vivek K Arora, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Malachi Griffith, Malachi Griffith
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer. Nature communications 14 (1) (2023)
Cristina Puig-Saus, Barbara Sennino, Songming Peng, Clifford L Wang, Zheng Pan, Benjamin Yuen, Bhamini Purandare, Duo An, Boi B Quach, Diana Nguyen, Huiming Xia, Sameeha Jilani, Kevin Shao, Claire McHugh, John Greer, Phillip Peabody, Saparya Nayak, Jonathan Hoover, Sara Said, Kyle Jacoby, Olivier Dalmas, Susan P Foy, Andrew Conroy, Michael C Yi, Christine Shieh, William Lu, Katharine Heeringa, Yan Ma, Shahab Chizari, Melissa J Pilling, Marc Ting, Ramya Tunuguntla, Salemiz Sandoval, Robert Moot, Theresa Hunter, Sidi Zhao, Justin D Saco, Ivan Perez-Garcilazo, Egmidio Medina, Agustin Vega-Crespo, Ignacio Baselga-Carretero, Gabriel Abril-Rodriguez, Grace Cherry, Deborah J Wong, Jasreet Hundal, Bartosz Chmielowski, Daniel E Speiser, Michael T Bethune, Xiaoyan R Bao, Alena Gros, Malachi Griffith, Malachi Griffith, James R Heath, Alex Franzusoff, Stefanie J Mandl, Antoni Ribas
Neoantigen-targeted CD8 + T cell responses with PD-1 blockade therapy. Nature (2023)
Kelsy C Cotto, Yang-Yang Feng, Avinash Ramu, Megan M Richters, Sharon L Freshour, Zachary L Skidmore, Huiming Xia, Joshua F McMichael, Jason Kunisaki, Katie M Campbell, Timothy Hung-Po Chen, Emily B Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C Chapman, Christopher A Maher, Vivek K Arora, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Malachi Griffith, Malachi Griffith
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer. Nature communications 14 (1) (2023)
Elizabeth A F Schaefer, Shirley Chu, Kristine M Wylie, Todd N Wylie, Malachi Griffith, Jacqueline W Pearce, Gayle C Johnson, Jeffrey N Bryan, Brian K Flesner
Metagenomic Analysis of DNA Viruses with Targeted Sequence Capture of Canine Lobular Orbital Adenomas and Normal Conjunctiva. Microorganisms 11 (5) (2023)
Andreea Chiorean, Kirsten M Farncombe, Sean Delong, Veronica Andric, Safa Ansar, Clarissa Chan, Kaitlin Clark, Arpad M Danos, Yizhuo Gao, Rachel H Giles, Anna Goldenberg, Payal Jani, Kilannin Krysiak, Lynzey Kujan, Samantha Macpherson, Eamonn R Maher, Liam G McCoy, Yasser Salama, Jason Saliba, Lana Sheta, Malachi Griffith, Malachi Griffith, Lauren Erdman, Arun Ramani, Raymond H Kim
Large scale genotype- and phenotype-driven machine learning in Von Hippel-Lindau disease. Human mutation 43 (9) (2022)
Christopher J Yoon, Su Yeon Kim, Chang Hyun Nam, Junehawk Lee, Jung Woo Park, Jihyeob Mun, Seongyeol Park, Soyoung Lee, Boram Yi, Kyoung Il Min, Brian Wiley, Kelly L Bolton, Jeong Ho Lee, Eunjoon Kim, Hee Jeong Yoo, Jong Kwan Jun, Ji Seon Choi, Malachi Griffith, Malachi Griffith, Young Seok Ju
Estimation of intrafamilial DNA contamination in family trio genome sequencing using deviation from Mendelian inheritance. Genome research 32 (11-12) (2022)
Erica K Barnell, Zachary L Skidmore, Kenneth F Newcomer, Monique Chavez, Katie M Campbell, Kelsy C Cotto, Nicholas C Spies, Marianna B Ruzinova, Tianjiao Wang, Brooj Abro, Friederike Kreisel, Bijal A Parikh, Eric J Duncavage, John L Frater, Yi-Shan Lee, Anjum Hassan, Justin King, Daniel R Kohnen, Mark A Fiala, John S S Welch, Geoffrey L Uy, Kiran Vij, Ravi Vij, Malachi Griffith, Malachi Griffith, Lukas D Wartman
Distinct clonal identities of B-ALLs arising after Lenolidomide therapy for multiple myeloma. Blood advances (2022)
Kilannin Krysiak, Arpad M Danos, Susanna Kiwala, Joshua F McMichael, Adam C Coffman, Erica K Barnell, Lana Sheta, Jason Saliba, Cameron J Grisdale, Lynzey Kujan, Shahil Pema, Jake Lever, Nicholas C Spies, Andreea Chiorean, Damian T Rieke, Kaitlin A Clark, Payal Jani, Hideaki Takahashi, Peter Horak, Deborah I Ritter, Xin Zhou, Benjamin J Ainscough, Sean Delong, Mario Lamping, Alex R Marr, Brian V Li, Wan-Hsin Lin, Panieh Terraf, Yasser Salama, Katie M Campbell, Kirsten M Farncombe, Jianling Ji, Xiaonan Zhao, Xinjie Xu, Rashmi Kanagal-Shamana, Kelsy C Cotto, Zachary L Skidmore, Jason R Walker, Jinghui Zhang, Aleksandar Milosavljevic, Ronak Y Patel, Rachel H Giles, Raymond H Kim, Lynn M Schriml, Elaine R Mardis, Steven J M Jones, Gordana Raca, Shruti Rao, Subha Madhavan, Alex H Wagner, Malachi Griffith, Malachi Griffith
A community approach to the cancer-variant-interpretation bottleneck. Nature cancer 3 (5) (2022)
Christopher J Yoon, Su Yeon Kim, Chang Hyun Nam, Junehawk Lee, Jung Woo Park, Jihyeob Mun, Seongyeol Park, Soyoung Lee, Boram Yi, Kyoung Il Min, Brian Wiley, Kelly L Bolton, Jeong Ho Lee, Eunjoon Kim, Hee Jeong Yoo, Jong Kwan Jun, Ji Seon Choi, Malachi Griffith, Malachi Griffith, Young Seok Ju
Estimation of intrafamilial DNA contamination in family trio genome sequencing using deviation from Mendelian inheritance. Genome research 32 (11-12) (2022)
Christopher J Yoon, Su Yeon Kim, Chang Hyun Nam, Junehawk Lee, Jung Woo Park, Jihyeob Mun, Seongyeol Park, Soyoung Lee, Boram Yi, Kyoung Il Min, Brian Wiley, Kelly L Bolton, Jeong Ho Lee, Eunjoon Kim, Hee Jeong Yoo, Jong Kwan Jun, Ji Seon Choi, Malachi Griffith, Malachi Griffith, Young Seok Ju
Estimation of intrafamilial DNA contamination in family trio genome sequencing using deviation from Mendelian inheritance. Genome research 32 (11-12) (2022)
Christopher J Yoon, Su Yeon Kim, Chang Hyun Nam, Junehawk Lee, Jung Woo Park, Jihyeob Mun, Seongyeol Park, Soyoung Lee, Boram Yi, Kyoung Il Min, Brian Wiley, Kelly L Bolton, Jeong Ho Lee, Eunjoon Kim, Hee Jeong Yoo, Jong Kwan Jun, Ji Seon Choi, Malachi Griffith, Malachi Griffith, Young Seok Ju
Estimation of intrafamilial DNA contamination in family trio genome sequencing using deviation from Mendelian inheritance. Genome research 32 (11-12) (2022)
Melissa M Berrien-Elliott, Jennifer A Foltz, David A Russler-Germain, Carly C Neal, Jennifer Tran, Margery Gang, Pamela Wong, Bryan Fisk, Celia C Cubitt, Nancy D Marin, Alice Y Zhou, Miriam T Jacobs, Mark Foster, Timothy Schappe, Ethan McClain, Samantha Kersting-Schadek, Sweta Desai, Patrick Pence, Michelle Becker-Hapak, Jeremy Eisele, Matthew Mosior, Lynne Marsala, Malachi Griffith, Malachi Griffith, Saad M Khan, David H Spencer, John F Dipersio, Rizwan Romee, Geoffrey L Uy, Camille N Abboud, Armin Ghobadi, Peter Westervelt, Keith E Stockerl-Goldstein, Mark A Schroeder, Fei Wan, Wen-Rong Lie, Patrick Soon-Shiong, Allegra A Petti, Amanda F Cashen, Todd A Fehniger
Hematopoietic cell transplantation donor-derived memory-like NK cells functionally persist after transfer into patients with leukemia. Science translational medicine 14 (633) (2022)
Christopher J Yoon, Su Yeon Kim, Chang Hyun Nam, Junehawk Lee, Jung Woo Park, Jihyeob Mun, Seongyeol Park, Soyoung Lee, Boram Yi, Kyoung Il Min, Brian Wiley, Kelly L Bolton, Jeong Ho Lee, Eunjoon Kim, Hee Jeong Yoo, Jong Kwan Jun, Ji Seon Choi, Malachi Griffith, Malachi Griffith, Young Seok Ju
Estimation of intrafamilial DNA contamination in family trio genome sequencing using deviation from Mendelian inheritance. Genome research 32 (11-12) (2022)
Kilannin Krysiak, Arpad M Danos, Jason Saliba, Joshua F McMichael, Adam C Coffman, Susanna Kiwala, Erica K Barnell, Lana Sheta, Cameron J Grisdale, Lynzey Kujan, Shahil Pema, Jake Lever, Sarah Ridd, Nicholas C Spies, Veronica Andric, Andreea Chiorean, Damian T Rieke, Kaitlin A Clark, Caralyn Reisle, Ajay C Venigalla, Mark Evans, Payal Jani, Hideaki Takahashi, Avila Suda, Peter Horak, Deborah I Ritter, Xin Zhou, Benjamin J Ainscough, Sean Delong, Chimene Kesserwan, Mario Lamping, Haolin Shen, Alex R Marr, My H Hoang, Kartik Singhal, Mariam Khanfar, Brian V Li, Wan-Hsin Lin, Panieh Terraf, Laura B Corson, Yasser Salama, Katie M Campbell, Kirsten M Farncombe, Jianling Ji, Xiaonan Zhao, Xinjie Xu, Rashmi Kanagal-Shamanna, Ian King, Kelsy C Cotto, Zachary L Skidmore, Jason R Walker, Jinghui Zhang, Aleksandar Milosavljevic, Ronak Y Patel, Rachel H Giles, Raymond H Kim, Lynn M Schriml, Elaine R Mardis, Steven J M Jones, Gordana Raca, Shruti Rao, Subha Madhavan, Alex H Wagner, Malachi Griffith, Malachi Griffith
CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase. Nucleic acids research (2022)
Christopher J Yoon, Su Yeon Kim, Chang Hyun Nam, Junehawk Lee, Jung Woo Park, Jihyeob Mun, Seongyeol Park, Soyoung Lee, Boram Yi, Kyoung Il Min, Brian Wiley, Kelly L Bolton, Jeong Ho Lee, Eunjoon Kim, Hee Jeong Yoo, Jong Kwan Jun, Ji Seon Choi, Malachi Griffith, Malachi Griffith, Young Seok Ju
Estimation of intrafamilial DNA contamination in family trio genome sequencing using deviation from Mendelian inheritance. Genome research 32 (11-12) (2022)
Maximilian O Schaettler, Megan M Richters, Anthony Z Wang, Zachary L Skidmore, Bryan Fisk, Katherine E Miller, Tammi L Vickery, Albert H Kim, Michael R Chicoine, Joshua W Osbun, Eric C Leuthardt, Joshua L Dowling, Gregory J Zipfel, Ralph G Dacey, Hsiang-Chih Lu, Tanner M Johanns, Malachi Griffith, Elaine R Mardis, Malachi Griffith, Gavin P Dunn
Characterization of the Genomic and Immunological Diversity of Malignant Brain Tumors Through Multi-Sector Analysis. Cancer discovery (2021)
Tenny Mudianto, Katie M Campbell, Jason Webb, Paul Zolkind, Zachary L Skidmore, Rachel Riley, Erica K Barnell, Ibrahim Ozgenc, Tusar Giri, Gavin P Dunn, Douglas R Adkins, Malachi Griffith, Ann Marie Egloff, Malachi Griffith, Ravindra Uppaluri
Yap1 Mediates Trametinib Resistance in Head and Neck Squamous Cell Carcinomas. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (8) (2021)
Jeffrey J Bednarski, Clare Zimmerman, Melissa M Berrien-Elliott, Jennifer A Foltz, Michelle Becker-Hapak, Carly C Neal, Mark Foster, Timothy Schappe, Ethan McClain, Patrick Pence, Sweta Desai, Samantha Kersting-Schadek, Pamela Wong, David A Russler-Germain, Bryan Fisk, Wen-Rong Lie, Jeremy Eisele, Stephanie Hyde, Sima T Bhatt, Malachi Griffith, Malachi Griffith, Allegra A Petti, Amanda F Cashen, Todd A Fehniger
Donor Memory-like NK cells Persist and Induce Remissions in Pediatric Patients with Relapsed AML after Transplant. Blood (2021)
Jeffrey P Ward, Melissa M Berrien-Elliott, Felicia Gomez, Jingqin R Luo, Michelle Becker-Hapak, Amanda F Cashen, Nina D Wagner-Johnston, Kami Maddocks, Matthew Mosior, Mark Foster, Kilannin Krysiak, Alina Schmidt, Zachary L Skidmore, Sweta Desai, Marcus P Watkins, Anne Fischer, Malachi Griffith, Malachi Griffith, Todd A Fehniger, Nancy L Bartlett
Phase I/Dose Expansion Trial of Brentuximab vedotin/Lenalidomide in Relapsed or Refractory Diffuse Large B-cell Lymphoma. Blood (2021)
Jennifer A Foltz, Brian T Hess, Veronika Bachanova, Nancy L Bartlett, Melissa M Berrien-Elliott, Ethan McClain, Michelle Becker-Hapak, Mark Foster, Timothy Schappe, Brad Kahl, Neha Mehta-Shah, Amanda F Cashen, Nancy D Marin, Kristen McDaniels, Chaz Moreno, Matthew Mosior, Feng Gao, Malachi Griffith, Malachi Griffith, Julia A Wagner, Narendranath Epperla, Amy D Rock, John Lee, Allegra A Petti, Patrick Soon-Shiong, Todd A Fehniger
Phase I Trial of N-803, an IL15 Receptor Agonist, with Rituximab in Patients with Indolent Non-Hodgkin Lymphoma. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (12) (2021)
Felicia Gomez, Malachi Griffith, Malachi Griffith
Genetic Ancestry Correlations with Driver Mutations Suggest Complex Interactions between Somatic and Germline Variation in Cancer. Cancer discovery 11 (3) (2021)
Andra Waagmeester, Gregory Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M Good, Malachi Griffith, Malachi Griffith, Kristina Hanspers, Henning Hermjakob, Toby S Hudson, Kevin Hybiske, Sarah M Keating, Magnus Manske, Michael D Mayers, Daniel Mietchen, Elvira Mitraka, Alexander R Pico, Timothy Putman, Anders Riutta, Núria Queralt-Rosinach, Lynn M Schriml, Thomas M A Shafee, Denise N Slenter, Ralf Stephan, Katherine Thornton, Ginger Tsueng, Roger Tu, Sabah Ul-Hasan, Egon L Wilighagen, Chunlei Wu, Andrew I Su
Wikidata as a knowledge graph for the life sciences. eLife 9 (2020)
Ravindra Uppaluri, Katie M Campbell, Ann Marie Egloff, Paul Zolkind, Zachary L Skidmore, Brian Nussenbaum, Randal C Paniello, Jason T Rich, Ryan Jackson, Patrik Pipkorn, Loren S Michel, Jessica Ley, Peter Oppelt, Gavin P Dunn, Erica K Barnell, Nicholas C Spies, Tianxiang Lin, Tiantian Li, David T Mulder, Youstina Hanna, Iulia Cirlan, Trevor J Pugh, Tenny Mudianto, Rachel Riley, Liye Zhou, Vickie Y Jo, Matthew D Stachler, Glenn J Hanna, Jason Kass, Robert Haddad, Jonathan D Schoenfeld, Evisa Gjini, Ana Lako, Wade Thorstad, Hiram A Gay, Mackenzie Daly, Scott J Rodig, Ian S Hagemann, Dorina Kallogjeri, Jay F Piccirillo, Rebecca D Chernock, Malachi Griffith, Malachi Griffith, Douglas R Adkins
Neoadjuvant and Adjuvant Pembrolizumab in Resectable Locally Advanced, Human Papillomavirus-Unrelated Head and Neck Cancer: A Multicenter, Phase II Trial. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (19) (2020)
Jasreet Hundal, Susanna Kiwala, Joshua McMichael, Christopher A Miller, Huiming Xia, Alexander T Wollam, Connor J Liu, Sidi Zhao, Yang-Yang Feng, Aaron P Graubert, Amber Z Wollam, Jonas Neichin, Megan N Thomas, Jason Walker, William E Gillanders, Elaine R Mardis, Malachi Griffith
pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens. Cancer immunology research 8 (3) (2020)
Alex H Wagner, Brian Walsh, Georgia Mayfield, David Tamborero, Dmitriy Sonkin, Kilannin Krysiak, Jordi Deu-Pons, Ryan P Duren, Jianjiong Gao, Julie McMurry, Sara Patterson, Catherine Del Vecchio Fitz, Beth A Pitel, Ozman U Sezerman, Kyle Ellrott, Jeremy L Warner, Damian T Rieke, Tero Aittokallio, Ethan Cerami, Deborah I Ritter, Lynn M Schriml, Robert R Freimuth, Melissa A Haendel, Gordana Raca, Subha Madhavan, Michael Baudis, Jacques S Beckmann, Rodrigo Dienstmann, Debyani Chakravarty, Xuan Shirley Li, Susan Mockus, Olivier Elemento, Nikolaus Schultz, Nuria Lopez-Bigas, Mark Lawler, Jeremy Goecks, Malachi Griffith, Malachi Griffith, Adam A Margolin, null null
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer. Nature genetics 52 (4) (2020)
Vidyalakshmi Sethunath, Huizhong Hu, Carmine De Angelis, Jamunarani Veeraraghavan, Lanfang Qin, Nicholas Wang, Lukas M Simon, Xiaoyong Fu, Agostina Nardone, Resel Pereira, Sarmistha Nanda, Malachi Griffith, Anna Tsimelzon, Chad Shaw, Gary C Chamness, Jorge S Reis-Filho, Britta Weigelt, Laura M Heiser, Susan G Hilsenbeck, Shixia Huang, Mothaffar F Rimawi, Joe W Gray, C Kent Osborne, Rachel Schiff
Targeting the Mevalonate Pathway to Overcome Acquired Anti-HER2 Treatment Resistance in Breast Cancer. Molecular cancer research : MCR 17 (11) (2019)
Gerald P Linette, Michelle Becker-Hapak, Zachary L Skidmore, Miren Lorea Baroja, Chong Xu, Jasreet Hundal, David H Spencer, Weixuan Fu, Casey Cummins, Maya Robnett, Saghar Kaabinejadian, William H Hildebrand, Vincent Magrini, Ryan Demeter, Alexander S Krupnick, Malachi Griffith, Malachi Griffith, Elaine R Mardis, Beatriz M Carreno
Immunological ignorance is an enabling feature of the oligo-clonal T cell response to melanoma neoantigens. Proceedings of the National Academy of Sciences of the United States of America 116 (47) (2019)
Arpad M Danos, Deborah I Ritter, Alex H Wagner, Kilannin Krysiak, Dmitriy Sonkin, Christine Micheel, Matthew McCoy, Shruti Rao, Gordana Raca, Simina M Boca, Angshumoy Roy, Erica K Barnell, Joshua F McMichael, Susanna Kiwala, Adam C Coffman, Lynzey Kujan, Shashikant Kulkarni, Malachi Griffith, Subha Madhavan, Malachi Griffith, null null
Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards. Human mutation 39 (11) (2019)
Alex H Wagner, Siddhartha Devarakonda, Zachary L Skidmore, Kilannin Krysiak, Avinash Ramu, Lee Trani, Jason Kunisaki, Ashiq Masood, Saiama N Waqar, Nicholas C Spies, Daniel Morgensztern, Jason Waligorski, Jennifer Ponce, Robert S Fulton, Leonard B Maggi, Jason D Weber, Mark A Watson, Christopher J O'Conor, Jon H Ritter, Rachelle R Olsen, Haixia Cheng, Anandaroop Mukhopadhyay, Ismail Can, Melissa H Cessna, Trudy G Oliver, Elaine R Mardis, Richard K Wilson, Malachi Griffith, Malachi Griffith, Ramaswamy Govindan
Recurrent WNT pathway alterations are frequent in relapsed small cell lung cancer. Nature communications 9 (1) (2018)
Benjamin J Ainscough, Erica K Barnell, Peter Ronning, Katie M Campbell, Alex H Wagner, Todd A Fehniger, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Thomas E Rohan, Malachi Griffith, Elaine R Mardis, S Joshua Swamidass, Malachi Griffith
A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data. Nature genetics 50 (12) (2018)
Jasreet Hundal, Susanna Kiwala, Yang-Yang Feng, Connor J Liu, Ramaswamy Govindan, William C Chapman, Ravindra Uppaluri, S Joshua Swamidass, Malachi Griffith, Elaine R Mardis, Malachi Griffith
Accounting for proximal variants improves neoantigen prediction. Nature genetics 51 (1) (2018)
Malachi Griffith, Nicholas C Spies, Meenakshi Anurag, Malachi Griffith, Jingqin Luo, Dongsheng Tu, Belinda Yeo, Jason Kunisaki, Christopher A Miller, Kilannin Krysiak, Jasreet Hundal, Benjamin J Ainscough, Zachary L Skidmore, Katie Campbell, Runjun Kumar, Catrina Fronick, Lisa Cook, Jacqueline E Snider, Sherri R Davies, Shyam M Kavuri, Eric C Chang, Vincent Magrini, David E Larson, Robert S Fulton, Shuzhen Liu, Samuel Leung, David Voduc, Ron Bose, Mitch Dowsett, Richard K Wilson, Torsten O Nielsen, Elaine R Mardis, Matthew J Ellis
The prognostic effects of somatic mutations in ER-positive breast cancer. Nature communications 9 (1) (2018)
Malachi Griffith, Nicholas C Spies, Meenakshi Anurag, Malachi Griffith, Jingqin Luo, Dongsheng Tu, Belinda Yeo, Jason Kunisaki, Christopher A Miller, Kilannin Krysiak, Jasreet Hundal, Benjamin J Ainscough, Zachary L Skidmore, Katie Campbell, Runjun Kumar, Catrina Fronick, Lisa Cook, Jacqueline E Snider, Sherri R Davies, Shyam M Kavuri, Eric C Chang, Vincent Magrini, David E Larson, Robert S Fulton, Shuzhen Liu, Samuel Leung, David Voduc, Ron Bose, Mitch Dowsett, Richard K Wilson, Torsten O Nielsen, Elaine R Mardis, Matthew J Ellis
Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer. Nature communications 9 (1) (2018)
Nancy L Bartlett, Brian A Costello, Betsy R LaPlant, Stephen M Ansell, John G Kuruvilla, Craig B Reeder, Lim S Thye, Daniel M Anderson, Kilannin Krysiak, Cody Ramirez, Jing Qi, Barry A Siegel, Malachi Griffith, Malachi Griffith, Felicia Gomez, Todd A Fehniger
Single-agent ibrutinib in relapsed or refractory follicular lymphoma: a phase 2 consortium trial. Blood 131 (2) (2017)
Christopher A Miller, Yevgeniy Gindin, Charles Lu, Malachi Griffith, Malachi Griffith, Dong Shen, Jeremy Hoog, Tiandao Li, David E Larson, Mark Watson, Sherri R Davies, Kelly Hunt, Vera J Suman, Jacqueline Snider, Thomas Walsh, Graham A Colditz, Katherine DeSchryver, Richard K Wilson, Elaine R Mardis, Matthew J Ellis
Aromatase inhibition remodels the clonal architecture of estrogen-receptor-positive breast cancers. Nature communications 7 (2016)
Xiaoyong Fu, Rinath Jeselsohn, Resel Pereira, Emporia F Hollingsworth, Chad J Creighton, Fugen Li, Martin Shea, Agostina Nardone, Carmine De Angelis, Laura M Heiser, Pavana Anur, Nicholas Wang, Catherine S Grasso, Paul T Spellman, Malachi Griffith, Anna Tsimelzon, Carolina Gutierrez, Shixia Huang, Dean P Edwards, Meghana V Trivedi, Mothaffar F Rimawi, Dolores Lopez-Terrada, Susan G Hilsenbeck, Joe W Gray, Myles Brown, C Kent Osborne, Rachel Schiff
FOXA1 overexpression mediates endocrine resistance by altering the ER transcriptome and IL-8 expression in ER-positive breast cancer. Proceedings of the National Academy of Sciences of the United States of America 113 (43) (2016)
Kilannin Krysiak, Felicia Gomez, Brian S White, Matthew Matlock, Christopher A Miller, Lee Trani, Catrina C Fronick, Robert S Fulton, Friederike Kreisel, Amanda F Cashen, Kenneth R Carson, Melissa M Berrien-Elliott, Nancy L Bartlett, Malachi Griffith, Malachi Griffith, Todd A Fehniger
Recurrent somatic mutations affecting B-cell receptor signaling pathway genes in follicular lymphoma. Blood 129 (4) (2016)
Robert Lesurf, Kelsy C Cotto, Grace Wang, Malachi Griffith, Katayoon Kasaian, Steven J M Jones, Stephen B Montgomery, Malachi Griffith, null null
ORegAnno 3.0: a community-driven resource for curated regulatory annotation. Nucleic acids research 44 (D1) (2015)
Alex H Wagner, Adam C Coffman, Benjamin J Ainscough, Nicholas C Spies, Zachary L Skidmore, Katie M Campbell, Kilannin Krysiak, Deng Pan, Joshua F McMichael, James M Eldred, Jason R Walker, Richard K Wilson, Elaine R Mardis, Malachi Griffith, Obi L Griffith
DGIdb 2.0: mining clinically relevant drug-gene interactions. Nucleic acids research 44 (D1) (2015)
Benjamin M Good, Salvatore Loguercio, Malachi Griffith, Max Nanis, Chunlei Wu, Andrew I Su
The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction. JMIR serious games 2 (2) (2014)

Malachi Griffith.css-eqlu8i{font-size:small;padding-left:4px;} (O Griffith, Obi L Griffith)

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Malachi Griffith (O Griffith, Obi L Griffith)