Jussi Taipale

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 18

Top Topics

Transcription Factor

Top Venues

Molecular systems biology

This page only lists publications with an associated author ORCID identifier.

Publications

Seungsoo Kim, Ekaterina Morgunova, Sahin Naqvi, Maram Bader, Mervenaz Koska, Alexander N Popov, Christy Luong, Angela N Pogson, Peter D Claes, Jussi Taipale, Joanna Wysocka
DNA-guided transcription factor cooperativity shapes face and limb mesenchyme. bioRxiv : the preprint server for biology (2023)
Carl G de Boer, Jussi Taipale
Hold out the genome: a roadmap to solving the cis-regulatory code. Nature (2023)
Martha L Bulyk, Jacques Drouin, Melissa M Harrison, Jussi Taipale, Kenneth S Zaret
Pioneer factors - key regulators of chromatin and gene expression. Nature reviews. Genetics (2023)
Päivi Pihlajamaa, Otto Kauko, Biswajyoti Sahu, Teemu Kivioja, Jussi Taipale
A competitive precision CRISPR method to identify the fitness effects of transcription factor binding sites. Nature biotechnology (2022)
Biswajyoti Sahu, Tuomo Hartonen, Päivi Pihlajamaa, Bei Wei, Kashyap Dave, Fangjie Zhu, Eevi Kaasinen, Katja Lidschreiber, Michael Lidschreiber, Carsten O Daub, Patrick Cramer, Teemu Kivioja, Jussi Taipale
Sequence determinants of human gene regulatory elements. Nature genetics 54 (3) (2022)
Jian Yan, Yunjiang Qiu, André M Ribeiro Dos Santos, Yimeng Yin, Yang Eric Li, Nick Vinckier, Naoki Nariai, Paola Benaglio, Anugraha Raman, Xiaoyu Li, Shicai Fan, Joshua Chiou, Fulin Chen, Kelly A Frazer, Kyle J Gaulton, Bjoern Gaertner, Jussi Taipale, Bing Ren
Systematic analysis of binding of transcription factors to noncoding variants. Nature 591 (7848) (2021)
Heli Kuisma, Simona Bramante, Kristiina Rajamäki, Lauri J Sipilä, Eevi Kaasinen, Jaana Kaukomaa, Kimmo Palin, Netta Mäkinen, Jari Sjöberg, Nanna Sarvilinna, Jussi Taipale, Liisa Kauppi, Manuela Tumiati, Antti Hassinen, Janne Pitkäniemi, Jyrki Jalkanen, Sanna M M Heikkinen, Annukka Pasanen, Oskari Heikinheimo, Ralf Bützow, Niko Välimäki, Lauri A Aaltonen
Parity associates with chromosomal damage in uterine leiomyomas. Nature communications 12 (1) (2021)
Davide G Berta, Heli Kuisma, Niko Välimäki, Maritta Räisänen, Maija Jäntti, Annukka Pasanen, Auli Karhu, Jaana Kaukomaa, Aurora Taira, Tatiana Cajuso, Sanna Nieminen, Rosa-Maria Penttinen, Saija Ahonen, Rainer Lehtonen, Miika Mehine, Pia Vahteristo, Jyrki Jalkanen, Biswajyoti Sahu, Janne Ravantti, Netta Mäkinen, Kristiina Rajamäki, Kimmo Palin, Jussi Taipale, Oskari Heikinheimo, Ralf Bützow, Eevi Kaasinen, Lauri A Aaltonen
Deficient H2A.Z deposition is associated with genesis of uterine leiomyoma. Nature 596 (7872) (2021)
Ganna Reint, Zhuokun Li, Kornel Labun, Salla Keskitalo, Inkeri Soppa, Katariina Mamia, Eero Tolo, Monika Szymanska, Leonardo A Meza-Zepeda, Susanne Lorenz, Artur Cieslar-Pobuda, Xian Hu, Diana L Bordin, Judith Staerk, Eivind Valen, Bernhard Schmierer, Markku Varjosalo, Jussi Taipale, Emma Haapaniemi
Rapid genome editing by CRISPR-Cas9-POLD3 fusion. eLife 10 (2021)
Biswajyoti Sahu, Päivi Pihlajamaa, Kaiyang Zhang, Kimmo Palin, Saija Ahonen, Alejandra Cervera, Ari Ristimäki, Lauri A Aaltonen, Sampsa Hautaniemi, Jussi Taipale
Human cell transformation by combined lineage conversion and oncogene expression. Oncogene 40 (36) (2021)
Katja Lidschreiber, Lisa A Jung, Henrik von der Emde, Kashyap Dave, Jussi Taipale, Patrick Cramer, Michael Lidschreiber
Transcriptionally active enhancers in human cancer cells. Molecular systems biology 17 (1) (2021)
Emma Haapaniemi, Sandeep K Botla, Jenna Persson, Bernhard Schmierer, Jussi Taipale
Reply to "CRISPR screens are feasible in TP53 wild-type cells". Molecular systems biology 15 (8) (2019)
Johanna Kondelin, Kari Salokas, Lilli Saarinen, Kristian Ovaska, Heli Rauanheimo, Roosa-Maria Plaketti, Jiri Hamberg, Xiaonan Liu, Leena Yadav, Alexandra E Gylfe, Tatiana Cajuso, Ulrika A Hänninen, Kimmo Palin, Heikki Ristolainen, Riku Katainen, Eevi Kaasinen, Tomas Tanskanen, Mervi Aavikko, Minna Taipale, Jussi Taipale, Laura Renkonen-Sinisalo, Anna Lepistö, Selja Koskensalo, Jan Böhm, Jukka-Pekka Mecklin, Halit Ongen, Emmanouil T Dermitzakis, Outi Kilpivaara, Pia Vahteristo, Mikko Turunen, Sampsa Hautaniemi, Sari Tuupanen, Auli Karhu, Niko Välimäki, Markku Varjosalo, Esa Pitkänen, Lauri A Aaltonen
Comprehensive evaluation of coding region point mutations in microsatellite-unstable colorectal cancer. EMBO molecular medicine 10 (9) (2019)
Jussi Taipale
Informational limits of biological organisms. The EMBO journal 37 (10) (2018)
Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush Kumar Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R Nitta, Minna Taipale, Alexander N Popov, Paul A Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale
Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science (New York, N.Y.) 356 (6337) (2018)
Ekaterina Morgunova, Yimeng Yin, Pratyush Kumar Das, Arttu Jolma, Fangjie Zhu, Alexander Popov, You Xu, Lennart Nilsson, Jussi Taipale
Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima. eLife 7 (2018)
Bernhard Schmierer, Sandeep K Botla, Jilin Zhang, Mikko Turunen, Teemu Kivioja, Jussi Taipale
CRISPR/Cas9 screening using unique molecular identifiers. Molecular systems biology 13 (10) (2017)
Kashyap Dave, Inderpreet Sur, Jian Yan, Jilin Zhang, Eevi Kaasinen, Fan Zhong, Leander Blaas, Xiaoze Li, Shabnam Kharazi, Charlotte Gustafsson, Ayla De Paepe, Robert Månsson, Jussi Taipale
Mice deficient of Myc super-enhancer region reveal differential control mechanism between normal and pathological growth. eLife 6 (2017)