Sampsa Hautaniemi

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 27

Top Venues

Science advances

NPJ precision oncology

Nature communications

bioRxiv : the preprint server for biology

University of Helsinki

Tampere University of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Helsinki Jan 01 2013

Finland

Professor :: Faculty of Medicine

Education History

Tampere University of Technology

Finland

PHD :: Signal Processing

University of Tampere

Finland

MSC :: Deparment of Automation

Publications

Daria R Bulanova, Yevhen Akimov, Wojciech Senkowski, Jaana Oikkonen, Laura Gall-Mas, Sanna Timonen, Manar Elmadani, Johanna Hynninen, Sampsa Hautaniemi, Tero Aittokallio, Krister Wennerberg
A synthetic lethal dependency on casein kinase 2 in response to replication-perturbing therapeutics in RB1-deficient cancer cells. Science advances 10 (21) (2024)
Kari Lavikka, Jaana Oikkonen, Yilin Li, Taru A Muranen, Giulia Micoli, Giovanni Marchi, Alexandra Lahtinen, Kaisa Huhtinen, Rainer Lehtonen, Sakari Hietanen, Johanna Hynninen, Anni Virtanen, Sampsa Hautaniemi
Deciphering cancer genomes with GenomeSpy: a grammar-based visualization toolkit. GigaScience 13 (2024)
Daria R Bulanova, Yevhen Akimov, Wojciech Senkowski, Jaana Oikkonen, Laura Gall-Mas, Sanna Timonen, Manar Elmadani, Johanna Hynninen, Sampsa Hautaniemi, Tero Aittokallio, Krister Wennerberg
A synthetic lethal dependency on casein kinase 2 in response to replication-perturbing therapeutics in RB1-deficient cancer cells. Science advances 10 (21) (2024)
Inga-Maria Launonen, Erdogan Pekcan Erkan, Iga Niemiec, Ada Junquera, María Hincapié-Otero, Daria Afenteva, Zhihan Liang, Matilda Salko, Angela Szabo, Fernando Pérez-Villatoro, Matias M Falco, Yilin Li, Giulia Micoli, Ashwini S Nagaraj, Ulla-Maija Haltia, Essi Kahelin, Jaana Oikkonen, Johanna Hynninen, Anni Virtanen, Ajit J Nirmal, Tuulia Vallius, Sampsa Hautaniemi, Peter Karl Sorger, Anna Vaharautio, Anniina Farkkila
Chemotherapy induces myeloid-driven spatial T-cell exhaustion in ovarian cancer. bioRxiv : the preprint server for biology (2024)
Inga-Maria Launonen, Erdogan Pekcan Erkan, Iga Niemiec, Ada Junquera, María Hincapié-Otero, Daria Afenteva, Zhihan Liang, Matilda Salko, Angela Szabo, Fernando Pérez-Villatoro, Matias M Falco, Yilin Li, Giulia Micoli, Ashwini S Nagaraj, Ulla-Maija Haltia, Essi Kahelin, Jaana Oikkonen, Johanna Hynninen, Anni Virtanen, Ajit J Nirmal, Tuulia Vallius, Sampsa Hautaniemi, Peter Karl Sorger, Anna Vaharautio, Anniina Farkkila
Chemotherapy induces myeloid-driven spatial T-cell exhaustion in ovarian cancer. bioRxiv : the preprint server for biology (2024)
Inga-Maria Launonen, Erdogan Pekcan Erkan, Iga Niemiec, Ada Junquera, María Hincapié-Otero, Daria Afenteva, Zhihan Liang, Matilda Salko, Angela Szabo, Fernando Pérez-Villatoro, Matias M Falco, Yilin Li, Giulia Micoli, Ashwini S Nagaraj, Ulla-Maija Haltia, Essi Kahelin, Jaana Oikkonen, Johanna Hynninen, Anni Virtanen, Ajit J Nirmal, Tuulia Vallius, Sampsa Hautaniemi, Peter Karl Sorger, Anna Vaharautio, Anniina Farkkila
Chemotherapy induces myeloid-driven spatial T-cell exhaustion in ovarian cancer. bioRxiv : the preprint server for biology (2024)
Kari Lavikka, Jaana Oikkonen, Yilin Li, Taru A Muranen, Giulia Micoli, Giovanni Marchi, Alexandra Lahtinen, Kaisa Huhtinen, Rainer Lehtonen, Sakari Hietanen, Johanna Hynninen, Anni Virtanen, Sampsa Hautaniemi
Deciphering cancer genomes with GenomeSpy: a grammar-based visualization toolkit. GigaScience 13 (2024)
Daria R Bulanova, Yevhen Akimov, Wojciech Senkowski, Jaana Oikkonen, Laura Gall-Mas, Sanna Timonen, Manar Elmadani, Johanna Hynninen, Sampsa Hautaniemi, Tero Aittokallio, Krister Wennerberg
A synthetic lethal dependency on casein kinase 2 in response to replication-perturbing therapeutics in RB1-deficient cancer cells. Science advances 10 (21) (2024)
Sanna Pikkusaari, Manuela Tumiati, Anni Virtanen, Jaana Oikkonen, Yilin Li, Fernando Pérez-Villatoro, Taru A Muranen, Matilda Salko, Kaisa Huhtinen, Anna Kanerva, Heidi Koskela, Johanna Tapper, Riitta Koivisto-Korander, Titta Joutsiniemi, Ulla-Maija Haltia, Heini Lassus, Sampsa Hautaniemi, Anniina Farkkila, Johanna Hynninen, Sakari Hietanen, Olli Carpen, Liisa Kauppi
Functional homologous recombination assay on FFPE specimens of advanced high-grade serous ovarian cancer predicts clinical outcomes. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Sanaz Jamalzadeh, Antti Häkkinen, Noora Andersson, Kaisa Huhtinen, Anna Laury, Sakari Hietanen, Johanna Hynninen, Jaana Oikkonen, Olli Carpén, Anni Virtanen, Sampsa Hautaniemi
QuantISH: RNA in situ hybridization image analysis framework for quantifying cell type-specific target RNA expression and variability. Laboratory investigation; a journal of technical methods and pathology 102 (7) (2022)
Susanna Holmström, Sampsa Hautaniemi, Antti Häkkinen
POIBM: batch correction of heterogeneous RNA-seq datasets through latent sample matching. Bioinformatics (Oxford, England) 38 (9) (2022)
Fernando Pérez-Villatoro, Jaana Oikkonen, Julia Casado, Anastasiya Chernenko, Doga C Gulhan, Manuela Tumiati, Yilin Li, Kari Lavikka, Sakari Hietanen, Johanna Hynninen, Ulla-Maija Haltia, Jaakko S Tyrmi, Finnpec Hannele Laivuori, Panagiotis A Konstantinopoulos, Sampsa Hautaniemi, Liisa Kauppi, Anniina Farkkila
Optimized detection of homologous recombination deficiency improves the prediction of clinical outcomes in cancer. NPJ precision oncology 6 (1) (2022)
Aikaterini Skorda, Marie Lund Bay, Sampsa Hautaniemi, Alexandra Lahtinen, Tuula Kallunki
Kinase Inhibitors in the Treatment of Ovarian Cancer: Current State and Future Promises. Cancers 14 (24) (2022)
Aikaterini Skorda, Marie Lund Bay, Sampsa Hautaniemi, Alexandra Lahtinen, Tuula Kallunki
Kinase Inhibitors in the Treatment of Ovarian Cancer: Current State and Future Promises. Cancers 14 (24) (2022)
Fernando Pérez-Villatoro, Jaana Oikkonen, Julia Casado, Anastasiya Chernenko, Doga C Gulhan, Manuela Tumiati, Yilin Li, Kari Lavikka, Sakari Hietanen, Johanna Hynninen, Ulla-Maija Haltia, Jaakko S Tyrmi, Finnpec Hannele Laivuori, Panagiotis A Konstantinopoulos, Sampsa Hautaniemi, Liisa Kauppi, Anniina Farkkila
Optimized detection of homologous recombination deficiency improves the prediction of clinical outcomes in cancer. NPJ precision oncology 6 (1) (2022)
Kaiyang Zhang, Erdogan Pekcan Erkan, Sanaz Jamalzadeh, Jun Dai, Noora Andersson, Katja Kaipio, Tarja Lamminen, Naziha Mansuri, Kaisa Huhtinen, Olli Carpen, Sakari Hietanen, Jaana Oikkonen, Johanna Hynninen, Anni Virtanen, Antti Häkkinen, Sampsa Hautaniemi, Anna Vaharautio
Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer. Science advances 8 (8) (2022)
Molly J Carroll, Katja Kaipio, Johanna Hynninen, Olli Carpen, Sampsa Hautaniemi, David Page, Pamela K Kreeger
A Subset of Secreted Proteins in Ascites Can Predict Platinum-Free Interval in Ovarian Cancer. Cancers 14 (17) (2022)
Fernando Pérez-Villatoro, Jaana Oikkonen, Julia Casado, Anastasiya Chernenko, Doga C Gulhan, Manuela Tumiati, Yilin Li, Kari Lavikka, Sakari Hietanen, Johanna Hynninen, Ulla-Maija Haltia, Jaakko S Tyrmi, Finnpec Hannele Laivuori, Panagiotis A Konstantinopoulos, Sampsa Hautaniemi, Liisa Kauppi, Anniina Farkkila
Optimized detection of homologous recombination deficiency improves the prediction of clinical outcomes in cancer. NPJ precision oncology 6 (1) (2022)
Elina A Pietilä, Jordi Gonzalez-Molina, Lidia Moyano-Galceran, Sanaz Jamalzadeh, Kaiyang Zhang, Laura Lehtinen, S Pauliina Turunen, Tomás A Martins, Okan Gultekin, Tarja Lamminen, Katja Kaipio, Ulrika Joneborg, Johanna Hynninen, Sakari Hietanen, Seija Grénman, Rainer Lehtonen, Sampsa Hautaniemi, Olli Carpén, Joseph W Carlson, Kaisa Lehti
Co-evolution of matrisome and adaptive adhesion dynamics drives ovarian cancer chemoresistance. Nature communications 12 (1) (2021)
Biswajyoti Sahu, Päivi Pihlajamaa, Kaiyang Zhang, Kimmo Palin, Saija Ahonen, Alejandra Cervera, Ari Ristimäki, Lauri A Aaltonen, Sampsa Hautaniemi, Jussi Taipale
Human cell transformation by combined lineage conversion and oncogene expression. Oncogene 40 (36) (2021)
Anniina Farkkila, Alfredo Rodríguez, Jaana Oikkonen, Doga C Gulhan, Huy Nguyen, Julieta Domínguez, Sandra Ramos, Caitlin E Mills, Fernando Pérez-Villatoro, Jean-Bernard Lazaro, Jia Zhou, Connor S Clairmont, Lisa A Moreau, Peter J Park, Peter Karl Sorger, Sampsa Hautaniemi, Sara Frías, Alan D' Andrea
Heterogeneity and Clonal Evolution of Acquired PARP Inhibitor Resistance in TP53- and BRCA1-Deficient Cells. Cancer research 81 (10) (2021)
Anniina Farkkila, Doga C Gulhan, Julia Casado, Connor A Jacobson, Huy Nguyen, Bose Kochupurakkal, Zoltan Maliga, Clarence Yapp, Yu-An Chen, Denis Schapiro, Yinghui Zhou, Julie R Graham, Bruce J Dezube, Pamela N Munster, Sandro Santagata, Elizabeth Garcia, Scott Rodig, Ana Lako, Dipanjan Chowdhury, Geoffrey I Shapiro, Ursula A Matulonis, Peter J Park, Sampsa Hautaniemi, Peter Karl Sorger, Elizabeth M Swisher, Alan D' Andrea, Panagiotis A Konstantinopoulos
Author Correction: Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer. Nature communications 11 (1) (2020)
Riikka H Hämäläinen, Juan Cruz Landoni, Kati J Ahlqvist, Steffi Goffart, Sanna Ryytty, M Obaidur Rahman, Virginia Brilhante, Katherine Icay, Sampsa Hautaniemi, Liya Wang, Marikki Laiho, Anu Suomalainen
Reply to: Proofreading deficiency in mitochondrial DNA polymerase does not affect total dNTP pools in mouse embryos. Nature metabolism 2 (8) (2020)
Anniina Farkkila, Doga C Gulhan, Julia Casado, Connor A Jacobson, Huy Nguyen, Bose Kochupurakkal, Zoltan Maliga, Clarence Yapp, Yu-An Chen, Denis Schapiro, Yinghui Zhou, Julie R Graham, Bruce J Dezube, Pamela N Munster, Sandro Santagata, Elizabeth Garcia, Scott Rodig, Ana Lako, Dipanjan Chowdhury, Geoffrey I Shapiro, Ursula A Matulonis, Peter J Park, Sampsa Hautaniemi, Peter Karl Sorger, Elizabeth M Swisher, Alan D' Andrea, Panagiotis A Konstantinopoulos
Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer. Nature communications 11 (1) (2020)
Chiara Facciotto, Julia Casado, Laura Turunen, Suvi-Katri Leivonen, Manuela Tumiati, Ville Rantanen, Liisa Kauppi, Rainer Lehtonen, Sirpa Leppä, Krister Wennerberg, Sampsa Hautaniemi
Drug screening approach combines epigenetic sensitization with immunochemotherapy in cancer. Clinical epigenetics 11 (1) (2019)
Riikka H Hämäläinen, Juan Cruz Landoni, Kati J Ahlqvist, Steffi Goffart, Sanna Ryytty, M Obaidur Rahman, Virginia Brilhante, Katherine Icay, Sampsa Hautaniemi, Liya Wang, Marikki Laiho, Anu Suomalainen
Defects in mtDNA replication challenge nuclear genome stability through nucleotide depletion and provide a unifying mechanism for mouse progerias. Nature metabolism 1 (10) (2019)
Katja Kaipio, Ping Chen, Pia Roering, Kaisa Huhtinen, Piia Mikkonen, Päivi Östling, Laura Lehtinen, Naziha Mansuri, Taina Korpela, Swapnil Potdar, Johanna Hynninen, Annika Auranen, Seija Grénman, Krister Wennerberg, Sampsa Hautaniemi, Olli Carpen
ALDH1A1-related stemness in high-grade serous ovarian cancer is a negative prognostic indicator but potentially targetable by EGFR/mTOR-PI3K/aurora kinase inhibitors. The Journal of pathology 250 (2) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Sampsa Hautaniemi