Katy Börner

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 41

Top Topics

Virtual Reality

Cardiac Surgery

Induced Pluripotent Stem Cells

Top Venues

bioRxiv : the preprint server for biology

Scientific data

Communications biology

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Yongqun Oliver He, Laura Barisoni, Avi Z Rosenberg, Peter Nick Robinson, Alexander D Diehl, Yichao Chen, Jimmy P Phuong, Jens Hansen, Bruce W Herr, Katy Börner, Jennifer A Schaub, Nikki Bonevich, Ghida Arnous, Saketh Boddapati, Jie Zheng, Fadhl M Al-Akwaa, Pinaki Sarder, William D Duncan, Chen Liang, M Todd Valerius, Sanjay Jain, Ravi Iyengar, Jonathan Himmelfarb, Matthias Kretzler, null null
Ontology-based modeling, integration, and analysis of heterogeneous clinical, pathological, and molecular kidney data for precision medicine. bioRxiv : the preprint server for biology (2024)
Yashvardhan Jain, Claire L Walsh, Ekin Yagis, Shahab Aslani, Sonal Nandanwar, Yang Zhou, Juhyung Ha, Katherine S Gustilo, Joseph Brunet, Shahrokh Rahmani, Paul Tfforeau, Alexandre Bellier, Griffin M Weber, Peter David Lee, Katy Börner
Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys. bioRxiv : the preprint server for biology (2024)
Katy Börner, Philip D Blood, Jonathan C Silverstein, Matthew Ruffalo, Sarah A Teichmann, Gloria S Pryhuber, Ravi S Misra, Jeffrey M Purkerson, Jean Fan, John W Hickey, Gesmira Molla, Chuan Xu, Yun Zhang, Griffin M Weber, Yashvardhan Jain, Danial Qaurooni, Yongxin Kong, null null, Andreas Bueckle, Bruce W Herr
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage. bioRxiv : the preprint server for biology (2024)
Yongqun Oliver He, Laura Barisoni, Avi Z Rosenberg, Peter Nick Robinson, Alexander D Diehl, Yichao Chen, Jimmy P Phuong, Jens Hansen, Bruce W Herr, Katy Börner, Jennifer A Schaub, Nikki Bonevich, Ghida Arnous, Saketh Boddapati, Jie Zheng, Fadhl M Al-Akwaa, Pinaki Sarder, William D Duncan, Chen Liang, M Todd Valerius, Sanjay Jain, Ravi Iyengar, Jonathan Himmelfarb, Matthias Kretzler, null null
Ontology-based modeling, integration, and analysis of heterogeneous clinical, pathological, and molecular kidney data for precision medicine. bioRxiv : the preprint server for biology (2024)
Katy Börner, Philip D Blood, Jonathan C Silverstein, Matthew Ruffalo, Sarah A Teichmann, Gloria S Pryhuber, Ravi S Misra, Jeffrey M Purkerson, Jean Fan, John W Hickey, Gesmira Molla, Chuan Xu, Yun Zhang, Griffin M Weber, Yashvardhan Jain, Danial Qaurooni, Yongxin Kong, null null, Andreas Bueckle, Bruce W Herr
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage. bioRxiv : the preprint server for biology (2024)
Yongxin Kong, Katy Börner
Publication, funding, and experimental data in support of Human Reference Atlas construction and usage. Scientific data 11 (1) (2024)
Katy Börner, Philip D Blood, Jonathan C Silverstein, Matthew Ruffalo, Sarah A Teichmann, Gloria S Pryhuber, Ravi S Misra, Jeffrey M Purkerson, Jean Fan, John W Hickey, Gesmira Molla, Chuan Xu, Yun Zhang, Griffin M Weber, Yashvardhan Jain, Danial Qaurooni, Yongxin Kong, null null, Andreas Bueckle, Bruce W Herr
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage. bioRxiv : the preprint server for biology (2024)
Yongxin Kong, Katy Börner
Publication, funding, and experimental data in support of Human Reference Atlas construction and usage. Scientific data 11 (1) (2024)
Katy Börner, Philip D Blood, Jonathan C Silverstein, Matthew Ruffalo, Sarah A Teichmann, Gloria S Pryhuber, Ravi S Misra, Jeffrey M Purkerson, Jean Fan, John W Hickey, Gesmira Molla, Chuan Xu, Yun Zhang, Griffin M Weber, Yashvardhan Jain, Danial Qaurooni, Yongxin Kong, null null, Andreas Bueckle, Bruce W Herr
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage. bioRxiv : the preprint server for biology (2024)
Yongxin Kong, Katy Börner
Publication, funding, and experimental data in support of Human Reference Atlas construction and usage. Scientific data 11 (1) (2024)
Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Michael P Snyder, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea J Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, null null, Katy Börner, Michael Paul Snyder
Author Correction: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP). Nature cell biology (2024)
Avinash Boppana, Sujin Lee, Rajeev Malhotra, Marc K Halushka, Katherine S Gustilo, Ellen M Quardokus, Bruce W Herr, Katy Börner, Griffin M Weber
Anatomical structures, cell types, and biomarkers of the healthy human blood vasculature. Scientific data 10 (1) (2023)
Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Michael P Snyder, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea J Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, null null, Katy Börner, Michael Paul Snyder
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP). Nature cell biology (2023)
Yashvardhan Jain, Leah L Godwin, Sripad Joshi, Shriya Mandarapu, Trang Le, Cecilia Lindskog, Emma Lundberg, Katy Börner
Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms. Nature communications 14 (1) (2023)
Andreas Bueckle, Catherine Qing, Shefali Luley, Yash Kumar, Naval Pandey, Katy Börner
The HRA Organ Gallery Affords Immersive Superpowers for Building and Exploring the Human Reference Atlas with Virtual Reality. bioRxiv : the preprint server for biology (2023)
Bruce W Herr, Josef Hardi, Ellen M Quardokus, Andreas Bueckle, Lu Chen, Fusheng Wang, Anita R Caron, David Osumi-Sutherland, Mark A Musen, Katy Börner
Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas. Scientific data 10 (1) (2023)
Yashvardhan Jain, Leah L Godwin, Yingnan Ju, Naveksha Sood, Ellen M Quardokus, Andreas Bueckle, Teri Longacre, Aaron Horning, Yiing Lin, Edward D Esplin, John W Hickey, Michael Paul Snyder, Nathan Heath Patterson, Jeffrey M Spraggins, Katy Börner
Segmentation of human functional tissue units in support of a Human Reference Atlas. Communications biology 6 (1) (2023)
Supriya Bidanta, Katy Börner, Bruce W Herr, Marcell Nagy, Katherine S Gustilo, Rachel Bajema, Libby Maier, Roland Molontay, Griffin M Weber
Functional Tissue Units in the Human Reference Atlas. bioRxiv : the preprint server for biology (2023)
Bruce W Herr, Josef Hardi, Ellen M Quardokus, Andreas Bueckle, Lu Chen, Fusheng Wang, Anita R Caron, David Osumi-Sutherland, Mark A Musen, Katy Börner
Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas. Scientific data 10 (1) (2023)
Yashvardhan Jain, Leah L Godwin, Sripad Joshi, Shriya Mandarapu, Trang Le, Cecilia Lindskog, Emma Lundberg, Katy Börner
Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms. bioRxiv : the preprint server for biology (2023)
Yashvardhan Jain, Leah L Godwin, Sripad Joshi, Shriya Mandarapu, Trang Le, Cecilia Lindskog, Emma Lundberg, Katy Börner
Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms. bioRxiv : the preprint server for biology (2023)
Soumya Ghose, Yingnan Ju, Elizabeth McDonough, Jonhan Ho, Arivarasan Karunamurthy, Chrystal Chadwick, Sanghee Cho, Rachel Rose, Alex Corwin, Christine Surrette, Jessica Martinez, Eric Williams, Anup Sood, Yousef Al-Kofahi, Louis D Falo, Katy Börner, Fiona Ginty
3D reconstruction of skin and spatial mapping of immune cell density, vascular distance and effects of sun exposure and aging. Communications biology 6 (1) (2023)
Ellen M Quardokus, Diane C Saunders, Elizabeth McDonough, John W Hickey, Christopher Werlein, Christine Surrette, Presha Rajbhandari, Anna Martinez Casals, Hua Tian, Lisa Lowery, Elizabeth K Neumann, Frida Björklund, Taruna V Neelakantan, Joshua Croteau, Anne E Wiblin, Jeremy Fisher, April J Livengood, Karen G Dowell, Jonathan C Silverstein, Jeffrey M Spraggins, Gloria S Pryhuber, Gail Deutsch, Fiona Ginty, Garry P Nolan, Simon Melov, Danny D Jonigk, Michael A Caldwell, Ioannis S Vlachos, Werner Muller, Nils Gehlenborg, Brent R Stockwell, Emma Lundberg, Michael Paul Snyder, Ronald N Germain, Jeannie M Camarillo, Michael P Snyder, Katy Börner, Andrea J Radtke
Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging. Nature methods (2023)
Andreas Bueckle, Catherine Qing, Shefali Luley, Yash Kumar, Naval Pandey, Katy Börner
The HRA Organ Gallery Affords Immersive Superpowers for Building and Exploring the Human Reference Atlas with Virtual Reality. bioRxiv : the preprint server for biology (2023)
Andreas Bueckle, Catherine Qing, Shefali Luley, Yash Kumar, Naval Pandey, Katy Börner
The HRA Organ Gallery Affords Immersive Superpowers for Building and Exploring the Human Reference Atlas with Virtual Reality. bioRxiv : the preprint server for biology (2023)
Aehong Min, Wendy R Miller, Luis M Rocha, Katy Börner, Rion Brattig Correia, Patrick C Shih
Understanding Contexts and Challenges of Information Management for Epilepsy Care. Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference 2023 (2023)
Yashvardhan Jain, Leah L Godwin, Sripad Joshi, Shriya Mandarapu, Trang Le, Cecilia Lindskog, Emma Lundberg, Katy Börner
Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms. bioRxiv : the preprint server for biology (2023)
Bruce W Herr, Josef Hardi, Ellen M Quardokus, Andreas Bueckle, Lu Chen, Fusheng Wang, Anita R Caron, David Osumi-Sutherland, Mark A Musen, Katy Börner
Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas. Scientific data 10 (1) (2023)
Trevor Manz, Ilan Gold, Nathan Heath Patterson, Chuck McCallum, Mark S Keller, Bruce W Herr, Katy Börner, Jeffrey M Spraggins, Nils Gehlenborg
Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web. Nature methods 19 (5) (2022)
Katy Börner, Andreas Bueckle, Bruce W Herr, Leonard E Cross, Ellen M Quardokus, Elizabeth G Record, Yingnan Ju, Jonathan C Silverstein, Kristen M Browne, Sanjay Jain, Clive H Wasserfall, Marda L Jorgensen, Jeffrey M Spraggins, Nathan Heath Patterson, Griffin M Weber
Tissue registration and exploration user interfaces in support of a human reference atlas. Communications biology 5 (1) (2022)
Katy Börner, Andreas Bueckle, Bruce W Herr, Leonard E Cross, Ellen M Quardokus, Elizabeth G Record, Yingnan Ju, Jonathan C Silverstein, Kristen M Browne, Sanjay Jain, Clive H Wasserfall, Marda L Jorgensen, Jeffrey M Spraggins, Nathan Heath Patterson, Griffin M Weber
Tissue registration and exploration user interfaces in support of a human reference atlas. Communications biology 5 (1) (2022)
Katy Börner, Andreas Bueckle, Bruce W Herr, Leonard E Cross, Ellen M Quardokus, Elizabeth G Record, Yingnan Ju, Jonathan C Silverstein, Kristen M Browne, Sanjay Jain, Clive H Wasserfall, Marda L Jorgensen, Jeffrey M Spraggins, Nathan Heath Patterson, Griffin M Weber
Tissue registration and exploration user interfaces in support of a human reference atlas. Communications biology 5 (1) (2022)
Katy Börner, Andreas Bueckle, Bruce W Herr, Leonard E Cross, Ellen M Quardokus, Elizabeth G Record, Yingnan Ju, Jonathan C Silverstein, Kristen M Browne, Sanjay Jain, Clive H Wasserfall, Marda L Jorgensen, Jeffrey M Spraggins, Nathan Heath Patterson, Griffin M Weber
Tissue registration and exploration user interfaces in support of a human reference atlas. Communications biology 5 (1) (2022)
Katy Börner, Andreas Bueckle, Bruce W Herr, Leonard E Cross, Ellen M Quardokus, Elizabeth G Record, Yingnan Ju, Jonathan C Silverstein, Kristen M Browne, Sanjay Jain, Clive H Wasserfall, Marda L Jorgensen, Jeffrey M Spraggins, Nathan Heath Patterson, Griffin M Weber
Tissue registration and exploration user interfaces in support of a human reference atlas. Communications biology 5 (1) (2022)
Katy Börner, Sarah A Teichmann, Ellen M Quardokus, James C Gee, Kristen Browne, David Osumi-Sutherland, Bruce W Herr, Andreas Bueckle, Hrishikesh Paul, Muzlifah A Haniffa, Laura Jardine, Amy Bernard, Song-Lin Ding, Jeremy A Miller, Shin Lin, Marc K Halushka, Avinash Boppana, Teri A Longacre, John Hickey, Yiing Lin, M Todd Valerius, Yongqun Oliver He, Gloria Pryhuber, Xin Sun, Marda Jorgensen, Andrea J Radtke, Clive Wasserfall, Fiona Ginty, Jonhan Ho, Joel Sunshine, Rebecca T Beuschel, Maigan Brusko, Sujin Lee, Rajeev Malhotra, Sanjay Jain, Griffin Weber
Anatomical structures, cell types and biomarkers of the Human Reference Atlas. Nature cell biology 23 (11) (2021)
Andreas Bueckle, Kilian Buehling, Patrick C Shih, Katy Börner
3D virtual reality vs. 2D desktop registration user interface comparison. PloS one 16 (10) (2021)
Katy Börner, Olga Scrivner, Mike Gallant, Shutian Ma, Xiaozhong Liu, Keith Chewning, Lingfei Wu, James A Evans
Skill discrepancies between research, education, and jobs reveal the critical need to supply soft skills for the data economy. Proceedings of the National Academy of Sciences of the United States of America 115 (50) (2019)
Katy Börner, William B Rouse, Paul Trunfio, Harry Eugene Stanley
Forecasting innovations in science, technology, and education. Proceedings of the National Academy of Sciences of the United States of America 115 (50) (2019)
Katy Börner, Andreas Bueckle, Michael Ginda
Data visualization literacy: Definitions, conceptual frameworks, exercises, and assessments. Proceedings of the National Academy of Sciences of the United States of America 116 (6) (2019)
Santo Fortunato, Carl T Bergstrom, Katy Börner, James A Evans, Dirk Helbing, Staša Milojević, Alexander Michael Petersen, Filippo Radicchi, Roberta Sinatra, Brian Uzzi, Alessandro Vespignani, Ludo Waltman, Dashun Wang, Albert-László Barabási
Science of science. Science (New York, N.Y.) 359 (6379) (2018)
Richard M Shiffrin, Katy Börner, Stephen M Stigler
Scientific progress despite irreproducibility: A seeming paradox. Proceedings of the National Academy of Sciences of the United States of America 115 (11) (2018)