Manuel Irimia

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 54

Top Venues

Nature ecology & evolution

PLoS biology

Nature metabolism

Translational psychiatry

Centre de Regulació Genòmica

Universitat de Barcelona (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Centre de Regulació Genòmica Jun 02 2014

Spain

Group Leader :: EMBL/CRG Systems Biology Unit

University of Toronto Aug 01 2011 - May 31 2014

Canada

HFSP Postdoctoral fellow :: The Donnelly Centre

Stanford University Jan 07 2011 - Jul 08 2011

United States

Postdoctoral fellow :: Dept. of Biology

Education History

Universitat de Barcelona Oct 01 2006 - Oct 01 2010

Spain

PHD :: Genetics

Publications

Daqi Yu, Yandong Ren, Masahiro Uesaka, Alan J S Beavan, Matthieu Muffato, Jieyu Shen, Yongxin Li, Iori Sato, Wenting Wan, James W Clark, Joseph N Keating, Emily M Carlisle, Richard P Dearden, Sam Giles, Emma Randle, Robert S Sansom, Roberto Feuda, James F Fleming, Fumiaki Sugahara, Carla Cummins, Mateus Patricio, Wasiu Akanni, Salvatore D'Aniello, Cristiano Bertolucci, Naoki Irie, Cantas Alev, Guojun Sheng, Alex de Mendoza, Ignacio Maeso, Manuel Irimia, Bastian Fromm, Kevin J Peterson, Sabyasachi Das, Masayuki Hirano, Jonathan P Rast, Max D Cooper, Jordi Paps, Davide Pisani, Shigeru Kuratani, Fergal J Martin, Wen Wang, Phillip C J Donoghue, Yong Edward Zhang, Juan Pascual-Anaya
Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature ecology & evolution (2024)
Ester Antón-Galindo, Maja R Adel, Judit García-González, Adele Leggieri, Laura López-Blanch, Manuel Irimia, William H J Norton, Caroline H Brennan, Noèlia Fernàndez-Castillo, Bru Cormand
Pleiotropic contribution of rbfox1 to psychiatric and neurodevelopmental phenotypes in two zebrafish models. Translational psychiatry 14 (1) (2024)
Daqi Yu, Yandong Ren, Masahiro Uesaka, Alan J S Beavan, Matthieu Muffato, Jieyu Shen, Yongxin Li, Iori Sato, Wenting Wan, James W Clark, Joseph N Keating, Emily M Carlisle, Richard P Dearden, Sam Giles, Emma Randle, Robert S Sansom, Roberto Feuda, James F Fleming, Fumiaki Sugahara, Carla Cummins, Mateus Patricio, Wasiu Akanni, Salvatore D'Aniello, Cristiano Bertolucci, Naoki Irie, Cantas Alev, Guojun Sheng, Alex de Mendoza, Ignacio Maeso, Manuel Irimia, Bastian Fromm, Kevin J Peterson, Sabyasachi Das, Masayuki Hirano, Jonathan P Rast, Max D Cooper, Jordi Paps, Davide Pisani, Shigeru Kuratani, Fergal J Martin, Wen Wang, Phillip C J Donoghue, Yong Edward Zhang, Juan Pascual-Anaya
Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature ecology & evolution 8 (3) (2024)
Federica Mantica, Luis Pedro Iñiguez, Yamile Marquez, Jon Permanyer, Antonio Torres-Mendez, Josefa Cruz, Xavier Franch-Marro, Frank Tulenko, Demian Burguera, Stéphanie Bertrand, Toby Doyle, Marcela Nouzova, Peter David Currie, Fernando G Noriega, Héctor Escrivá, Maria Ina Arnone, Caroline B Albertin, Karl R Wotton, Isabel Almudi, David Martin, Manuel Irimia
Evolution of tissue-specific expression of ancestral genes across vertebrates and insects. Nature ecology & evolution (2024)
Ester Antón-Galindo, Maja R Adel, Judit García-González, Adele Leggieri, Laura López-Blanch, Manuel Irimia, William H J Norton, Caroline H Brennan, Noèlia Fernàndez-Castillo, Bru Cormand
Pleiotropic contribution of rbfox1 to psychiatric and neurodevelopmental phenotypes in two zebrafish models. Translational psychiatry 14 (1) (2024)
Ester Antón-Galindo, Maja R Adel, Judit García-González, Adele Leggieri, Laura López-Blanch, Manuel Irimia, William H J Norton, Caroline H Brennan, Noèlia Fernàndez-Castillo, Bru Cormand
Pleiotropic contribution of rbfox1 to psychiatric and neurodevelopmental phenotypes in two zebrafish models. Translational psychiatry 14 (1) (2024)
Ludovica Ciampi, Luis Serrano, Manuel Irimia
Unique transcriptomes of sensory and non-sensory neurons: insights from Splicing Regulatory States. Molecular systems biology 20 (4) (2024)
Federica Mantica, Luis Pedro Iñiguez, Yamile Marquez, Jon Permanyer, Antonio Torres-Mendez, Josefa Cruz, Xavier Franch-Marro, Frank Tulenko, Demian Burguera, Stéphanie Bertrand, Toby Doyle, Marcela Nouzova, Peter David Currie, Fernando G Noriega, Héctor Escrivá, Maria Ina Arnone, Caroline B Albertin, Karl R Wotton, Isabel Almudi, David Martin, Manuel Irimia
Evolution of tissue-specific expression of ancestral genes across vertebrates and insects. Nature ecology & evolution 8 (6) (2024)
Daqi Yu, Yandong Ren, Masahiro Uesaka, Alan J S Beavan, Matthieu Muffato, Jieyu Shen, Yongxin Li, Iori Sato, Wenting Wan, James W Clark, Joseph N Keating, Emily M Carlisle, Richard P Dearden, Sam Giles, Emma Randle, Robert S Sansom, Roberto Feuda, James F Fleming, Fumiaki Sugahara, Carla Cummins, Mateus Patricio, Wasiu Akanni, Salvatore D'Aniello, Cristiano Bertolucci, Naoki Irie, Cantas Alev, Guojun Sheng, Alex de Mendoza, Ignacio Maeso, Manuel Irimia, Bastian Fromm, Kevin J Peterson, Sabyasachi Das, Masayuki Hirano, Jonathan P Rast, Max D Cooper, Jordi Paps, Davide Pisani, Shigeru Kuratani, Fergal J Martin, Wen Wang, Phillip C J Donoghue, Yong Edward Zhang, Juan Pascual-Anaya
Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature ecology & evolution 8 (3) (2024)
Ludovica Ciampi, Luis Serrano, Manuel Irimia
Unique transcriptomes of sensory and non-sensory neurons: insights from Splicing Regulatory States. Molecular systems biology (2024)
Ester Antón-Galindo, Maja R Adel, Judit García-González, Adele Leggieri, Laura López-Blanch, Manuel Irimia, William H J Norton, Caroline H Brennan, Noèlia Fernàndez-Castillo, Bru Cormand
Pleiotropic contribution of rbfox1 to psychiatric and neurodevelopmental phenotypes in two zebrafish models. Translational psychiatry 14 (1) (2024)
Ester Antón-Galindo, Maja R Adel, Judit García-González, Adele Leggieri, Laura López-Blanch, Manuel Irimia, William H J Norton, Caroline H Brennan, Noèlia Fernàndez-Castillo, Bru Cormand
Pleiotropic contribution of rbfox1 to psychiatric and neurodevelopmental phenotypes in two zebrafish models. Translational psychiatry 14 (1) (2024)
Ester Antón-Galindo, Maja R Adel, Judit García-González, Adele Leggieri, Laura López-Blanch, Manuel Irimia, William H J Norton, Caroline H Brennan, Noèlia Fernàndez-Castillo, Bru Cormand
Pleiotropic contribution of rbfox1 to psychiatric and neurodevelopmental phenotypes in two zebrafish models. Translational psychiatry 14 (1) (2024)
Ludovica Ciampi, Luis Serrano, Manuel Irimia
Unique transcriptomes of sensory and non-sensory neurons: insights from Splicing Regulatory States. Molecular systems biology 20 (4) (2024)
Ludovica Ciampi, Luis Serrano, Manuel Irimia
Unique transcriptomes of sensory and non-sensory neurons: insights from Splicing Regulatory States. Molecular systems biology 20 (4) (2024)
Daqi Yu, Yandong Ren, Masahiro Uesaka, Alan J S Beavan, Matthieu Muffato, Jieyu Shen, Yongxin Li, Iori Sato, Wenting Wan, James W Clark, Joseph N Keating, Emily M Carlisle, Richard P Dearden, Sam Giles, Emma Randle, Robert S Sansom, Roberto Feuda, James F Fleming, Fumiaki Sugahara, Carla Cummins, Mateus Patricio, Wasiu Akanni, Salvatore D'Aniello, Cristiano Bertolucci, Naoki Irie, Cantas Alev, Guojun Sheng, Alex de Mendoza, Ignacio Maeso, Manuel Irimia, Bastian Fromm, Kevin J Peterson, Sabyasachi Das, Masayuki Hirano, Jonathan P Rast, Max D Cooper, Jordi Paps, Davide Pisani, Shigeru Kuratani, Fergal J Martin, Wen Wang, Phillip C J Donoghue, Yong Edward Zhang, Juan Pascual-Anaya
Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature ecology & evolution 8 (3) (2024)
Valentin Wucher, Reza Sodaei, Raziel Amador, Manuel Irimia, Roderic Guigo
Day-night and seasonal variation of human gene expression across tissues. PLoS biology 21 (2) (2023)
Jonàs Juan-Mateu, Simon Bajew, Marta Miret-Cuesta, Luis P Íñiguez, Amaya López-Pascual, Sophie C Bonnal, Goutham Atla, Silvia Bonàs-Guarch, Jorge Ferrer, Juan Valcárcel, Manuel Irimia
Pancreatic microexons regulate islet function and glucose homeostasis. Nature metabolism 5 (2) (2023)
Jonàs Juan-Mateu, Simon Bajew, Marta Miret-Cuesta, Luis P Íñiguez, Amaya López-Pascual, Sophie C Bonnal, Goutham Atla, Silvia Bonàs-Guarch, Jorge Ferrer, Juan Valcárcel, Manuel Irimia
Pancreatic microexons regulate islet function and glucose homeostasis. Nature metabolism 5 (2) (2023)
Jonàs Juan-Mateu, Simon Bajew, Marta Miret-Cuesta, Luis P Íñiguez, Amaya López-Pascual, Sophie C Bonnal, Goutham Atla, Silvia Bonàs-Guarch, Jorge Ferrer, Juan Valcárcel, Manuel Irimia
Pancreatic microexons regulate islet function and glucose homeostasis. Nature metabolism (2023)
André Gohr, Luis P Iñiguez, Antonio Torres-Méndez, Sophie C Bonnal, Manuel Irimia
Insplico: effective computational tool for studying splicing order of adjacent introns genome-wide with short and long RNA-seq reads. Nucleic acids research (2023)
Jonàs Juan-Mateu, Simon Bajew, Marta Miret-Cuesta, Luis P Íñiguez, Amaya López-Pascual, Sophie C Bonnal, Goutham Atla, Silvia Bonàs-Guarch, Jorge Ferrer, Juan Valcárcel, Manuel Irimia
Pancreatic microexons regulate islet function and glucose homeostasis. Nature metabolism 5 (2) (2023)
Ester Antón-Galindo, Maja Adel, Judit García-Gonzalez, Adele Leggieri, Laura López-Blanch, Manuel Irimia, William Hj Norton, Caroline H Brennan, Noèlia Fernàndez-Castillo, Bru Cormand
Pleiotropic contribution of rbfox1 to psychiatric and neurodevelopmental phenotypes in a zebrafish model. bioRxiv : the preprint server for biology (2023)
Irene López-Oreja, André Gohr, Heribert Playa-Albinyana, Ariadna Giró, Fabian Arenas, Morihiro Higashi, Rupal Tripathi, Mònica López-Guerra, Manuel Irimia, Marta Aymerich, Juan Valcárcel, Sophie C Bonnal, Dolors Colomer
SF3B1 mutation-mediated sensitization to H3B-8800 splicing inhibitor in chronic lymphocytic leukemia. Life science alliance 6 (11) (2023)
Valentin Wucher, Reza Sodaei, Raziel Amador, Manuel Irimia, Roderic Guigo
Day-night and seasonal variation of human gene expression across tissues. PLoS biology 21 (2) (2023)
Ester Antón-Galindo, Maja Adel, Judit García-Gonzalez, Adele Leggieri, Laura López-Blanch, Manuel Irimia, William Hj Norton, Caroline H Brennan, Noèlia Fernàndez-Castillo, Bru Cormand
Pleiotropic contribution of rbfox1 to psychiatric and neurodevelopmental phenotypes in a zebrafish model. bioRxiv : the preprint server for biology (2023)
Valentin Wucher, Reza Sodaei, Raziel Amador, Manuel Irimia, Roderic Guigo
Day-night and seasonal variation of human gene expression across tissues. PLoS biology 21 (2) (2023)
Valentin Wucher, Reza Sodaei, Raziel Amador, Manuel Irimia, Roderic Guigo
Day-night and seasonal variation of human gene expression across tissues. PLoS biology 21 (2) (2023)
Jonàs Juan-Mateu, Simon Bajew, Marta Miret-Cuesta, Luis P Íñiguez, Amaya López-Pascual, Sophie C Bonnal, Goutham Atla, Silvia Bonàs-Guarch, Jorge Ferrer, Juan Valcárcel, Manuel Irimia
Pancreatic microexons regulate islet function and glucose homeostasis. Nature metabolism (2023)
Valentin Wucher, Reza Sodaei, Raziel Amador, Manuel Irimia, Roderic Guigo
Day-night and seasonal variation of human gene expression across tissues. PLoS biology 21 (2) (2023)
Jonàs Juan-Mateu, Simon Bajew, Marta Miret-Cuesta, Luis P Íñiguez, Amaya López-Pascual, Sophie C Bonnal, Goutham Atla, Silvia Bonàs-Guarch, Jorge Ferrer, Juan Valcárcel, Manuel Irimia
Pancreatic microexons regulate islet function and glucose homeostasis. Nature metabolism (2023)
Valentin Wucher, Reza Sodaei, Raziel Amador, Manuel Irimia, Roderic Guigo
Day-night and seasonal variation of human gene expression across tissues. PLoS biology 21 (2) (2023)
Valentin Wucher, Reza Sodaei, Raziel Amador, Manuel Irimia, Roderic Guigo
Day-night and seasonal variation of human gene expression across tissues. PLoS biology 21 (2) (2023)
Cristina Molnar, Jose Reina, Anastasia Herrero, Jan Peter Heinen, Victoria Méndiz, Sophie C Bonnal, Manuel Irimia, María Sánchez-Jiménez, Sara Sánchez-Molina, Jaume Mora, Cayetano Gonzalez
Human EWS-FLI protein recapitulates in Drosophila the neomorphic functions that induce Ewing sarcoma tumorigenesis. PNAS nexus 1 (4) (2022)
Ludovica Ciampi, Federica Mantica, Laura López-Blanch, Jon Permanyer, Cristina Rodriguez-Marín, Jingjing Zang, Damiano Cianferoni, Senda Jiménez-Delgado, Sophie C Bonnal, Samuel Miravet-Verde, Verena Ruprecht, Stephan C F Neuhauss, Sandro Banfi, Sabrina Carrella, Luis Serrano, Sarah A Head, Manuel Irimia
Specialization of the photoreceptor transcriptome by Srrm3 -dependent microexons is required for outer segment maintenance and vision. Proceedings of the National Academy of Sciences of the United States of America 119 (29) (2022)
Christopher Douglas Robert Wyatt, Barbara Pernaute, André Gohr, Marta Miret-Cuesta, Lucia Goyeneche, Quirze Rovira, Marion C Salzer, Elvan Boke, Ozren Bogdanovic, Sophie C Bonnal, Manuel Irimia
A developmentally programmed splicing failure contributes to DNA damage response attenuation during mammalian zygotic genome activation. Science advances 8 (15) (2022)
Anthony Leon, Lucie Subirana, Kevin Magre, Ildefonso Cases, Juan J Tena, Manuel Irimia, Jose Luis Gomez-Skarmeta, Hector Escriva, Stéphanie Bertrand
Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate. Molecular biology and evolution 39 (4) (2022)
Antonio Torres-Mendez, Sinziana Pop, Sophie C Bonnal, Isabel Almudi, Alida Avola, Ruairí J V Roberts, Chiara Paolantoni, Ana Alcaina Caro, Ane Martin Anduaga, Irmgard U Haussmann, Violeta Morin, Fernando Casares, Matthias Soller, Sebastian Kadener, Jean-Yves Roignant, Lucia L Prieto-Godino, Manuel Irimia
Parallel evolution of a splicing program controlling neuronal excitability in flies and mammals. Science advances 8 (4) (2022)
Thomas Spruce, Mireya Plass, André Gohr, Debashish Ray, María Martínez de Lagrán, Gregor Rot, Ana Nóvoa, Demian Burguera, Jon Permanyer, Marta Miret, Hong Zheng, Maurice S Swanson, Quaid Morris, Moisés Mallo, Mara Dierssen, Timothy R Hughes, Barbara Pernaute, Manuel Irimia
The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians. PLoS biology 20 (4) (2022)
Cristina Molnar, Jose Reina, Anastasia Herrero, Jan Peter Heinen, Victoria Méndiz, Sophie C Bonnal, Manuel Irimia, María Sánchez-Jiménez, Sara Sánchez-Molina, Jaume Mora, Cayetano Gonzalez
Human EWS-FLI protein recapitulates in Drosophila the neomorphic functions that induce Ewing sarcoma tumorigenesis. PNAS nexus 1 (4) (2022)
Esteban Hoijman, Hanna-Maria Häkkinen, Queralt Tolosa-Ramon, Senda Jiménez-Delgado, Chris Wyatt, Marta Miret-Cuesta, Manuel Irimia, Andrew Callan-Jones, Stefan Wieser, Verena Ruprecht
Cooperative epithelial phagocytosis enables error correction in the early embryo. Nature 590 (7847) (2021)
Guiomar Martín, Yamile Márquez, Federica Mantica, Paula Duque, Manuel Irimia
Alternative splicing landscapes in Arabidopsis thaliana across tissues and stress conditions highlight major functional differences with animals. Genome biology 22 (1) (2021)
Yamile Márquez, Federica Mantica, Luca Cozzuto, Demian Burguera, Antonio Hermoso-Pulido, Julia Ponomarenko, Scott W Roy, Manuel Irimia
ExOrthist: a tool to infer exon orthologies at any evolutionary distance. Genome biology 22 (1) (2021)
Valentin Wucher, Reza Sodaei, Raziel Amador, Manuel Irimia, Roderic Guigó
Day-night and seasonal variation of human gene expression across tissues. bioRxiv : the preprint server for biology (2021)
José María Martín-Durán, Bruno Cossermelli Vellutini, Ferdinand Marletaz, Viviana Cetrangolo, Nevena Cvetesic, Daniel Thiel, Simon Henriet, Xavier Grau-Bové, Allan Martín Carrillo-Baltodano, Wenjia Gu, Alexandra Kerbl, Yamile Marquez, Nicolas Bekkouche, Daniel Chourrout, José Luis Gómez-Skarmeta, Manuel Irimia, Boris Lenhard, Katrine Worsaae, Andreas Hejnol
Publisher Correction: Conservative route to genome compaction in a miniature annelid. Nature ecology & evolution (2020)
Isabel Almudi, Joel Vizueta, Christopher D R Wyatt, Alex de Mendoza, Ferdinand Marletaz, Panos N Firbas, Roberto Feuda, Giulio Masiero, Patricia Medina, Ana Alcaina Caro, Fernando Cruz, Jèssica Gómez Garrido, Marta Gut, Tyler S Alioto, Carlos Vargas-Chavez, Kristofer Davie, Bernhard Misof, Josefa González, Stein Aerts, Ryan Lister, Jordi Paps, Julio Rozas, Alejandro Sánchez Gracia, Manuel Irimia, Ignacio Maeso, Fernando Casares
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature communications 11 (1) (2020)
José María Martín-Durán, Bruno Cossermelli Vellutini, Ferdinand Marletaz, Viviana Cetrangolo, Nevena Cvetesic, Daniel Thiel, Simon Henriet, Xavier Grau-Bové, Allan Martín Carrillo-Baltodano, Wenjia Gu, Alexandra Kerbl, Yamile Marquez, Nicolas Bekkouche, Daniel Chourrout, José Luis Gómez-Skarmeta, Manuel Irimia, Boris Lenhard, Katrine Worsaae, Andreas Hejnol
Conservative route to genome compaction in a miniature annelid. Nature ecology & evolution 5 (2) (2020)
Ksenia Skvortsova, Katsiaryna Tarbashevich, Martin Stehling, Ryan Lister, Manuel Irimia, Erez Raz, Ozren Bogdanovic
Retention of paternal DNA methylome in the developing zebrafish germline. Nature communications 10 (1) (2019)
Antonio Torres-Mendez, Sophie Bonnal, Yamile Marquez, Jonathan Roth, Marta Iglesias, Jon Permanyer, Isabel Almudí, Dave O'Hanlon, Tanit Guitart, Matthias Soller, Anne-Claude Gingras, Fátima Gebauer, Fabian Rentzsch, Benjamin J Blencowe, Juan Valcárcel, Manuel Irimia
A novel protein domain in an ancestral splicing factor drove the evolution of neural microexons. Nature ecology & evolution 3 (4) (2019)
Xavier Grau-Bové, Iñaki Ruiz-Trillo, Manuel Irimia
Origin of exon skipping-rich transcriptomes in animals driven by evolution of gene architecture. Genome biology 19 (1) (2018)
Juan Pablo Fernandez, Miguel Angel Moreno-Mateos, Andre Gohr, Liyun Miao, Shun Hang Chan, Manuel Irimia, Antonio J Giraldez
RES complex is associated with intron definition and required for zebrafish early embryogenesis. PLoS genetics 14 (7) (2018)
Demian Burguera, Yamile Marquez, Claudia Racioppi, Jon Permanyer, Antonio Torres-Mendez, Rosaria Esposito, Beatriz Albuixech-Crespo, Lucía Fanlo, Ylenia D'Agostino, Andre Gohr, Enrique Navas-Perez, Ana Riesgo, Claudia Cuomo, Giovanna Benvenuto, Lionel A Christiaen, Elisa Martí, Salvatore D'Aniello, Antonietta Spagnuolo, Filomena Ristoratore, Maria Ina Arnone, Jordi Garcia-Fernàndez, Manuel Irimia
Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes. Nature communications 8 (1) (2017)
Beatriz Albuixech-Crespo, Laura López-Blanch, Demian Burguera, Ignacio Maeso, Luisa Sánchez-Arrones, Juan Antonio Moreno-Bravo, Ildiko Somorjai, Juan Pascual-Anaya, Eduardo Puelles, Paola Bovolenta, Jordi Garcia-Fernàndez, Luis Puelles, Manuel Irimia, José Luis Ferran
Molecular regionalization of the developing amphioxus neural tube challenges major partitions of the vertebrate brain. PLoS biology 15 (4) (2017)
Jordi Solana, Manuel Irimia, Salah Ayoub, Marta Rodriguez Orejuela, Vera Zywitza, Marvin Jens, Javier Tapial, Debashish Ray, Quaid Morris, Timothy R Hughes, Benjamin J Blencowe, Nikolaus Rajewsky
Conserved functional antagonism of CELF and MBNL proteins controls stem cell-specific alternative splicing in planarians. eLife 5 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Manuel Irimia