Bart Deplancke

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 31

Top Topics

Transcription Factor

Gene Expression

Top Venues

Nature communications

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Olga Pushkarev, Guido van Mierlo, Judith Franziska Kribelbauer, Wouter Saelens, Vincent Gardeux, Bart Deplancke
Non-coding variants impact cis-regulatory coordination in a cell type-specific manner. Genome biology 25 (1) (2024)
Olga Pushkarev, Guido van Mierlo, Judith Franziska Kribelbauer, Wouter Saelens, Vincent Gardeux, Bart Deplancke
Non-coding variants impact cis-regulatory coordination in a cell type-specific manner. Genome biology 25 (1) (2024)
Maria Polychronidou, Jingyi Hou, M Madan Babu, Prisca Liberali, Ido Amit, Bart Deplancke, Galit Lahav, Shalev Itzkovitz, Matthias Mann, Julio Saez-Rodriguez, Fabian Joachim Theis, Roland Eils
Single-cell biology: what does the future hold? Molecular systems biology (2023)
Florian V De Rop, Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens, Carmen Bravo González-Blas, Domenica Marchese, Ginevra Caratù, Suresh Poovathingal, Orit Rozenblatt-Rosen, Michael Slyper, Wendy Luo, Christoph Muus, Fabiana M Duarte, Rojesh Shrestha, S Tansu Bagdatli, M Ryan Corces, Lira Mamanova, Andrew Knights, Kerstin B Meyer, Ryan M Mulqueen, Akram Taherinasab, Patrick Maschmeyer, Joern Pezoldt, Camille Lucie Germaine Lambert, Marta Iglesias, Sebastián R Najle, Zain Y Dossani, Luciano G Martelotto, Zachary Daniel Burkett, Ronald Lebofsky, José Ignacio Martin-Subero, Satish Pillai, Arnau Sebé-Pedrós, Bart Deplancke, Sarah A Teichmann, Leif S Ludwig, Theodore P Braun, Andrew C Adey, William J Greenleaf, Jason D Buenrostro, Aviv Regev, Stein Aerts, Holger Heyn
Systematic benchmarking of single-cell ATAC-sequencing protocols. Nature biotechnology (2023)
Seungjae Lee, Yen-Chung Chen, null null, Austin E Gillen, J Matthew Taliaferro, Bart Deplancke, Hongjie Li, Eric C Lai
Diverse cell-specific patterns of alternative polyadenylation in Drosophila. Nature communications 13 (1) (2022)
Joern Pezoldt, Carolin Wiechers, Mangge Zou, Maria Litovchenko, Marjan Biocanin, Michael Beckstette, Katarzyna M Sitnik, Martina Palatella, Guido van Mierlo, Wanze Chen, Vincent Gardeux, Stefan Floess, Maria Ebel, Julie M C Russeil, Panagiota Arampatzi, Ehsan Vafardanejad, Antoine-Emmanuel Saliba, Bart Deplancke, Jochen Huehn
Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34 + stromal cell subsets. Nature communications 13 (1) (2022)
Magda Zachara, Pernille Y Rainer, Horia Hashimi, Julie M Russeil, Daniel Alpern, Radiana Ferrero, Maria Litovchenko, Bart Deplancke
Mammalian adipogenesis regulator (Areg) cells use retinoic acid signalling to be non- and anti-adipogenic in age-dependent manner. The EMBO journal 41 (18) (2022)
Hongjie Li, Jasper Janssens, Maxime De Waegeneer, Sai Saroja Kolluru, Kristofer Davie, Vincent Gardeux, Wouter Saelens, Fabrice P A David, Maria Brbic, Katina I Spanier, Jure Leskovec, Colleen N McLaughlin, Qijing Xie, Robert C Jones, Katja Brueckner, Jiwon Shim, Sudhir Gopal Tattikota, Frank Schnorrer, Katja Rust, Rebecca P Kim-Yip, Zita Carvalho-Santos, Carlos Ribeiro, Soumitra Pal, Sharvani Mahadevaraju, Teresa M Przytycka, Aaron M Allen, Stephen F Goodwin, Cameron W Berry, Margaret T Fuller, Helen White-Cooper, Erika L Matunis, Stephen DiNardo, Anthony Galenza, Lucy Erin O'Brien, Julian A T Dow, null null, Heinrich Jasper, Brian Oliver, Norbert Perrimon, Bart Deplancke, Stephen R Quake, Liqun Luo, Stein Aerts, Devika Agarwal, Yasir Ahmed-Braimah, Michelle Arbeitman, Majd M Ariss, Jordan Augsburger, Kumar Ayush, Catherine C Baker, Torsten Banisch, Katja Birker, Rolf Bodmer, Benjamin Bolival, Susanna E Brantley, Julie A Brill, Nora C Brown, Norene A Buehner, Xiaoyu Tracy Cai, Rita Cardoso-Figueiredo, Fernando Casares, Amy Chang, Thomas R Clandinin, Sheela Crasta, Claude Desplan, Angela M Detweiler, Darshan B Dhakan, Erika Donà, Stefanie Engert, Swann Floc'hlay, Nancy George, Amanda J González-Segarra, Andrew K Groves, Samantha Gumbin, Yanmeng Guo, Devon E Harris, Yael Heifetz, Stephen L Holtz, Felix Horns, Bruno Hudry, Ruei-Jiun Hung, Yuh Nung Jan, Jacob S Jaszczak, Gregory S X E Jefferis, Jim Karkanias, Timothy L Karr, Nadja Sandra Katheder, James Kezos, Anna A Kim, Seung K Kim, Lutz Kockel, Nikolaos Konstantinides, Thomas B Kornberg, Henry M Krause, Andrew Thomas Labott, Meghan Laturney, Ruth Lehmann, Sarah Leinwand, Jiefu Li, Joshua Shing Shun Li, Kai Li, Ke Li, Liying Li, Tun Li, Maria Litovchenko, Han-Hsuan Liu, Yifang Liu, Tzu-Chiao Lu, Jonathan Manning, Anjeli Mase, Mikaela Matera-Vatnick, Neuza Reis Matias, Caitlin E McDonough-Goldstein, Aaron McGeever, Alex D McLachlan, Paola Moreno-Roman, Norma Neff, Megan Neville, Sang Ngo, Tanja Nielsen, Caitlin E O'Brien, David Osumi-Sutherland, Mehmet Neset Özel, Irene Papatheodorou, Maja Petkovic, Clare Pilgrim, Angela Oliveira Pisco, Carolina Reisenman, Erin Nicole Sanders, Gilberto Dos Santos, Kristin Scott, Aparna Sherlekar, Philip Shiu, David Sims, Rene V Sit, Maija Slaidina, Harold E Smith, Gabriella Sterne, Yu-Han Su, Daniel Sutton, Marco Tamayo, Michelle Tan, Ibrahim Tastekin, Christoph Treiber, David Vacek, Georg Vogler, Scott Waddell, Wanpeng Wang, Rachel I Wilson, Mariana F Wolfner, Yiu-Cheung E Wong, Anthony Xie, Jun Xu, Shinya Yamamoto, Jia Yan, Zepeng Yao, Kazuki Yoda, Ruijun Zhu, Robert P Zinzen
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly. Science (New York, N.Y.) 375 (6584) (2022)
Johannes Bues, Marjan Biočanin, Joern Pezoldt, Riccardo Dainese, Antonius Chrisnandy, Saba Rezakhani, Wouter Saelens, Vincent Gardeux, Revant Gupta, Rita Sarkis, Julie M C Russeil, Yvan Saeys, Esther Amstad, Manfred Claassen, Matthias P Lutolf, Bart Deplancke
Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition. Nature methods 19 (3) (2022)
Wanze Chen, Orane Guillaume-Gentil, Pernille Yde Rainer, Christoph G Gäbelein, Wouter Saelens, Vincent Gardeux, Amanda Klaeger, Riccardo Dainese, Magda Zachara, Tomaso Zambelli, Julia A Vorholt, Bart Deplancke
Live-seq enables temporal transcriptomic recording of single cells. Nature 608 (7924) (2022)
Gerard Llimos, Vincent Gardeux, Ute Koch, Judith F Kribelbauer, Antonina Hafner, Daniel Alpern, Joern Pezoldt, Maria Litovchenko, Julie M C Russeil, Riccardo Dainese, Riccardo Moia, Abdurraouf Mokhtar Mahmoud, Davide Rossi, Gianluca Gaidano, Christoph Plass, Pavlo Lutsik, Clarissa Gerhauser, Sebastian M Waszak, Alistair Boettiger, Freddy Radtke, Bart Deplancke
A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation. Nature communications 13 (1) (2022)
Judith Barbara Zaugg, Pelin Sahlén, Robin Andersson, Meritxell Alberich-Jorda, Wouter de Laat, Bart Deplancke, Jorge Ferrer, Susanne Mandrup, Gioacchino Natoli, Dariusz Plewczyński, Álvaro Rada-Iglesias, Salvatore Spicuglia
Current challenges in understanding the role of enhancers in disease. Nature structural & molecular biology (2022)
Aynur Kaya-Çopur, Fabio Marchiano, Marco Y Hein, Daniel Alpern, Julie Russeil, Nuno Miguel Luis, Matthias Mann, Bart Deplancke, Bianca Hermine Habermann, Frank Schnorrer
The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression. eLife 10 (2021)
Philip Vkovski, Mitra Gultom, Jenna N Kelly, Silvio Steiner, Julie Russeil, Bastien Mangeat, Elisa Cora, Joern Pezoldt, Melle Holwerda, Annika Kratzel, Laura Laloli, Manon Wider, Jasmine Portmann, Thao Tran, Nadine Ebert, Hanspeter Stalder, Rune Hartmann, Vincent Gardeux, Daniel Alpern, Bart Deplancke, Volker Thiel, Ronald Dijkman
Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium. PLoS biology 19 (3) (2021)
Andrea Bast-Habersbrunner, Christoph Andreas Engelhard, Peter Weber, Tobias Fromme, Anna Schießl, Petra C Schwalie, Bart Deplancke, Yongguo Li, Martin Klingenspor
LncRNA Ctcflos orchestrates transcription and alternative splicing in thermogenic adipogenesis. EMBO reports 22 (7) (2021)
Maria Litovchenko, Antonio C A Meireles-Filho, Michael V Frochaux, Roel P J Bevers, Alessio Prunotto, Ane Martin Anduaga, Brian Hollis, Vincent Gardeux, Virginie S Braman, Julie M C Russeil, Sebastian Kadener, Matteo Dal Peraro, Bart Deplancke
Extensive tissue-specific expression variation and novel regulators underlying circadian behavior. Science advances 7 (5) (2021)
Joern Pezoldt, Carolin Wiechers, Florian Erhard, Ulfert Rand, Tanja Bulat, Michael Beckstette, Andrea Brendolan, Jochen Huehn, Ulrich Kalinke, Mathias Müller, Birgit Strobl, Bart Deplancke, Luka Čičin Šain, Katarzyna M Sitnik
Single-cell transcriptional profiling of splenic fibroblasts reveals subset-specific innate immune signatures in homeostasis and during viral infection. Communications biology 4 (1) (2021)
Priscilla Turelli, Christopher J Playfoot, Dephine Grun, Charlène Raclot, Julien Pontis, Alexandre Coudray, Christian W Thorball, Julien Duc, Eugenia V Pankevich, Bart Deplancke, Volker Busskamp, Didier Trono
Primate-restricted KRAB zinc finger proteins and target retrotransposons control gene expression in human neurons. Science advances 6 (35) (2020)
Hirokazu Okada, Ryohei Yagi, Vincent Gardeux, Bart Deplancke, Ernst Hafen
Sex-dependent and sex-independent regulatory systems of size variation in natural populations. Molecular systems biology 15 (11) (2020)
Riccardo Dainese, Vincent Gardeux, Gerard Llimos, Daniel Alpern, Jia Yuan Jiang, Antonio Carlos Alves Meireles-Filho, Bart Deplancke
A parallelized, automated platform enabling individual or sequential ChIP of histone marks and transcription factors. Proceedings of the National Academy of Sciences of the United States of America 117 (24) (2020)
Cornelia Fritsch, F Javier Bernardo-Garcia, Tim-Henning Humberg, Abhishek Kumar Mishra, Sara Miellet, Silvia Almeida, Michael V Frochaux, Bart Deplancke, Armin Huber, Simon G Sprecher
Multilevel regulation of the glass locus during Drosophila eye development. PLoS genetics 15 (7) (2019)
Graeme R Grimes, Cédric Deluz, Antonio Ca Meireles-Filho, Subashika Govindan, Vincent Gardeux, Bart Deplancke, David M Suter
Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle. eLife 8 (2019)
Marjan Biočanin, Johannes Bues, Riccardo Dainese, Esther Amstad, Bart Deplancke
Simplified Drop-seq workflow with minimized bead loss using a bead capture and processing microfluidic chip. Lab on a chip 19 (9) (2019)
Roel P J Bevers, Maria Litovchenko, Adamandia Kapopoulou, Virginie S Braman, Matthew R Robinson, Johan Auwerx, Brian Hollis, Bart Deplancke
Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel. Nature metabolism 1 (12) (2019)
Wanze Chen, Petra C Schwalie, Eugenia V Pankevich, Carine Gubelmann, Sunil K Raghav, Riccardo Dainese, Marco Cassano, Michael Imbeault, Suk Min Jang, Julie Russeil, Tenagne Delessa, Julien Duc, Didier Trono, Christian Wolfrum, Bart Deplancke
ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer. Nature communications 10 (1) (2019)
Philip Houtz, Alessandro Bonfini, Xi Liu, Jonathan Revah, Aurélien Guillou, Mickael Poidevin, Korneel Hens, Hsin-Yi Huang, Bart Deplancke, Yu-Chen Tsai, Nicolas S Buchon
Hippo, TGF-β, and Src-MAPK pathways regulate transcription of the upd3 cytokine in Drosophila enterocytes upon bacterial infection. PLoS genetics 13 (11) (2017)
Aaron F McDaid, Peter K Joshi, Eleonora Porcu, Andrea Komljenovic, Hao Li, Vincenzo Sorrentino, Maria Litovchenko, Roel P J Bevers, Sina Rüeger, Alexandre Reymond, Murielle Bochud, Bart Deplancke, Robert W Williams, Marc Robinson-Rechavi, Fred Paccaud, Valentin Rousson, Johan Auwerx, James F Wilson, Zoltán Kutalik
Bayesian association scan reveals loci associated with human lifespan and linked biomarkers. Nature communications 8 (2017)
Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carnici, Menna Clatworthy, Hans Clevers, Bart Deplancke, Ian Dunham, James Eberwine, Roland Eils, Wolfgang Enard, Andrew Farmer, Lars Fugger, Berthold Göttgens, Nir Hacohen, Muzlifah A Haniffa, Martin Hemberg, Seung Kim, Paul Klenerman, Arnold Kriegstein, Ed S Lein, Sten Linnarsson, Emma Lundberg, Joakim Lundeberg, Partha Majumder, John C Marioni, Miriam Merad, Musa Mhlanga, Martijn Nawijn, Mihai Netea, Garry Nolan, Dana Pe'er, Anthony Phillipakis, Chris Paul Ponting, Stephen Quake, Wolf Reik, Orit Rozenblatt-Rosen, Joshua R Sanes, Rahul Satija, Ton N Schumacher, Alex Shalek, Ehud Shapiro, Padmanee Sharma, Jay W Shin, Oliver Stegle, Michael Stratton, Michael J T Stubbington, Fabian J Theis, Matthias Uhlen, Alexander van Oudenaarden, Allon Wagner, Fiona M Watt, Jonathan S Weissman, Barbara Wold, Ramnik Xavier, Nir Yosef, null null
The Human Cell Atlas. eLife 6 (2017)
Luis Humberto Mojica-Vazquez, Mikhail H Benetah, Aissette Baanannou, Sandra Bernat-Fabre, Bart Deplancke, David L Cribbs, Henri-Marc Bourbon, Muriel Boube
Tissue-specific enhancer repression through molecular integration of cell signaling inputs. PLoS genetics 13 (4) (2017)
Patricia Mendoza-García, Fredrik Hugosson, Mahsa Fallah, Michael L Higgins, Yasuno Iwasaki, Kathrin Pfeifer, Georg Wolfstetter, Guarav K Varshney, Dmitry Popichenko, John Peter Gergen, Korneel Hens, Bart Deplancke, Ruth H Palmer
The Zic family homologue Odd-paired regulates Alk expression in Drosophila. PLoS genetics 13 (4) (2017)
Petra C Schwalie, Paloma Ordóñez-Morán, Joerg Huelsken, Bart Deplancke
Cross-Tissue Identification of Somatic Stem and Progenitor Cells Using a Single-Cell RNA-Sequencing Derived Gene Signature. Stem cells (Dayton, Ohio) 35 (12) (2017)