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Levi Waldron

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 20

Top Venues

Nature medicine

medRxiv : the preprint server for health sciences

F1000Research

Scientific reports

CUNY School of Public Health

University of Toronto (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

CUNY School of Public Health Jul 1o 2016

United States

Associate Professor :: Epidemiology and Biostatistics

Education History

University of Toronto

Canada

PHD :: Wood Science

Publications

Francesco Asnicar, Andrew Maltez Thomas, Andrea Passerini, Levi Waldron, Nicola Segata
Machine learning for microbiologists. Nature reviews. Microbiology (2023)
Ludwig Geistlinger, Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, Clare Grieve, Jennifer Wokaty, Samuel David Gamboa-Tuz, Pratyay Sengupta, Issac Hecht, Aarthi Ravikrishnan, Rafael S Gonçalves, Eric A Franzosa, Karthik Raman, Vincent Carey, Jennifer Beam Dowd, Heidi E Jones, Sean Davis, Nicola Segata, Curtis Huttenhower, Levi Waldron
BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures. Nature biotechnology (2023)
Denis Nash, Madhura S Rane, McKaylee M Robertson, Mindy Chang, Sarah Kulkarni Gorrell, Rebecca Zimba, William You, Amanda Berry, Chloe Mirzayi, Shivani Kochhar, Andrew Maroko, Drew A Westmoreland, Angela M Parcesepe, Levi Waldron, Christian Grov
SARS-CoV-2 incidence and risk factors in a national, community-based prospective cohort of U.S. adults. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America (2022)
Sehyun Oh, Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N Taroni, Vincent J Carey, Casey S Greene, Levi Waldron, Sean Davis
GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases. Nature communications 13 (1) (2022)
Himel Mallick, Gholamali Rahnavard, Lauren J McIver, Siyuan Ma, Yancong Zhang, Long H Nguyen, Timothy L Tickle, George Weingart, Boyu Ren, Emma H Schwager, Suvo Chatterjee, Kelsey N Thompson, Jeremy E Wilkinson, Ayshwarya Subramanian, Yiren Lu, Levi Waldron, Joseph N Paulson, Eric A Franzosa, Hector Corrada Bravo, Curtis Huttenhower
Multivariable association discovery in population-scale meta-omics studies. PLoS computational biology 17 (11) (2021)
Chloe Mirzayi, Audrey Renson, null null, null null, Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z Marques, David A MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D Cotter, John F Cryan, Ryan T Demmer, Suzanne Devkota, Eran Elinav, Juan S Escobar, Jennifer Fettweis, Robert D Finn, Anthony A Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C McHardy, Shannon McWeeney, Noel T Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R Redinbo, Malte Rühlemann, R Balfour Sartor, Patrick D Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L Sonnenburg, Sujatha Srinivasan, Louise B Thingholm, Peter J Turnbaugh, Vaibhav Upadhyay, Ramona L Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E Mason, Tim R Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B Dowd, Heidi E Jones, Levi Waldron
Reporting guidelines for human microbiome research: the STORMS checklist. Nature medicine 27 (11) (2021)
Francesco Asnicar, Sarah E Berry, Ana M Valdes, Long H Nguyen, Gianmarco Piccinno, David A Drew, Emily Leeming, Rachel Gibson, Caroline Ivanne Le Roy, Haya Al Khatib, Lucy Francis, Mohsen Mazidi, Olatz Mompeo, Mireia Valles-Colomer, Adrian Tett, Francesco Beghini, Léonard Dubois, Davide Bazzani, Andrew Maltez Thomas, Chloe Mirzayi, Asya Khleborodova, Sehyun Oh, Rachel Hine, Christopher Bonnett, Joan Capdevila Pujol, Serge Danzanvilliers, Francesca Giordano, Ludwig Geistlinger, Levi Waldron, Richard Davies, George Hadjigeorgiou, Jonathan Wolf, José Marìa Ordovàs, Christopher D Gardner, Paul W Franks, Andrew T Chan, Curtis Huttenhower, Timothy D Spector, Nicola Segata
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals. Nature medicine 27 (2) (2021)
Marcel Ramos, Ludwig Geistlinger, Sehyun Oh, Lucas Schiffer, Rimsha Azhar, Hanish Kodali, Ino De Bruijn, Jianjiong Gao, Vincent J Carey, Martin Morgan, Levi Waldron
Multiomic Integration of Public Oncology Databases in Bioconductor. JCO clinical cancer informatics 4 (2021)
Rebecca Zimba, Sarah Kulkarni, Amanda L Berry, William You, Chloe Mirzayi, Drew Anne Westmoreland, Angela M Parcesepe, Levi Waldron, Madhura S Rane, Shivani Kochhar, McKaylee M Robertson, Andrew R Maroko, Christian Grov, Denis Nash
SARS-CoV-2 Testing Service Preferences of Adults in the United States: Discrete Choice Experiment. JMIR public health and surveillance 6 (4) (2020)
Matthew L Romo, Rebecca Zimba, Sarah Kulkarni, Amanda L Berry, William You, Chloe Mirzayi, Drew Anne Westmoreland, Angela M Parcesepe, Levi Waldron, Madhura Rane, Shivani Kochhar, McKaylee M Robertson, Andrew R Maroko, Christian Grov, Denis Nash
Patterns of SARS-CoV-2 testing preferences in a national cohort in the United States. medRxiv : the preprint server for health sciences (2020)
Sehyun Oh, Jasmine Abdelnabi, Ragheed Al-Dulaimi, Ayush Aggarwal, Marcel Ramos, Sean Davis, Markus Riester, Levi Waldron
HGNChelper: identification and correction of invalid gene symbols for human and mouse. F1000Research 9 (2020)
Angela M Parcesepe, McKaylee M Robertson, Amanda Berry, Andrew Maroko, Rebecca Zimba, Christian Grov, Drew Westmoreland, Sarah Kulkarni, Madhura Rane, William Salgado-You, Chloe Mirzayi, Levi Waldron, Denis Nash
The relationship between anxiety, health, and potential stressors among adults in the United States during the COVID-19 pandemic. medRxiv : the preprint server for health sciences (2020)
Edoardo Pasolli, Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong, Francesco Beghini, Faizan Malik, Marcel Ramos, Jennifer B Dowd, Curtis Huttenhower, Martin Morgan, Nicola Segata, Levi Waldron
Accessible, curated metagenomic data through ExperimentHub. Nature methods 14 (11) (2019)
Robert A Amezquita, Aaron T L Lun, Etienne Becht, Vince J Carey, Lindsay N Carpp, Ludwig Geistlinger, Federico Marini, Kevin Christophe Rue-Albrecht, Davide Risso, Charlotte Soneson, Levi Waldron, Hervé Pagès, Mike L Smith, Wolfgang Huber, Martin Morgan, Raphael Gottardo, Stephanie C Hicks
Orchestrating single-cell analysis with Bioconductor. Nature methods 17 (2) (2019)
Jakob Wirbel, Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese, Jonas S Fleck, Anita Y Voigt, Albert Palleja, Ruby Ponnudurai, Shinichi Sunagawa, Luis Pedro Coelho, Petra Schrotz-King, Emily Vogtmann, Nina Habermann, Emma Niméus, Andrew Maltez Thomas, Paolo Manghi, Sara Gandini, Davide Serrano, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Levi Waldron, Alessio Naccarati, Nicola Segata, Rashmi Sinha, Cornelia M Ulrich, Hermann Brenner, Manimozhiyan Arumugam, Peer Bork, Georg Zeller
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer. Nature medicine 25 (4) (2019)
Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Jakob Wirbel, Petra Schrotz-King, Cornelia M Ulrich, Hermann Brenner, Manimozhiyan Arumugam, Peer Bork, Georg Zeller, Francesca Cordero, Emmanuel Dias-Neto, João Carlos Setubal, Adrian Tett, Barbara Pardini, Maria Rescigno, Levi Waldron, Alessio Naccarati, Nicola Segata
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation. Nature medicine 25 (4) (2019)
Deena M A Gendoo, Michael Zon, Vandana Sandhu, Venkata S K Manem, Natchar Ratanasirigulchai, Gregory M Chen, Levi Waldron, Benjamin Haibe-Kains
MetaGxData: Clinically Annotated Breast, Ovarian and Pancreatic Cancer Datasets and their Use in Generating a Multi-Cancer Gene Signature. Scientific reports 9 (1) (2019)
Sean Davis, Marcel Ramos, Lori Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T Morgan, Benjamin Haibe-Kains, Levi Waldron
Orchestrating a community-developed computational workshop and accompanying training materials. F1000Research 7 (2018)
Levi Waldron
Data and Statistical Methods To Analyze the Human Microbiome. mSystems 3 (2) (2018)
Ludwig Geistlinger, Vinicius Henrique da Silva, Aline Silva Mello Cesar, Polyana Cristine Tizioto, Levi Waldron, Ralf Zimmer, Luciana Correia de Almeida Regitano, Luiz Lehmann Coutinho
Widespread modulation of gene expression by copy number variation in skeletal muscle. Scientific reports 8 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Levi Waldron