Karthik Raman

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 31

Top Venues

mBio

NPJ systems biology and applications

Scientific reports

ISME communications

Indian Institute of Technology Madras

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Indian Institute of Technology Madras Apr 20 2011

India

Assistant Professor :: Biotechnology

Publications

Georgios Miliotis, Pratyay Sengupta, Asif Hameed, Maria Chuvochina, Francesca McDonagh, Anna C Simpson, Ceth W Parker, Nitin K Singh, Punchappady-Devasya Rekha, Dearbháile Morris, Karthik Raman, Nikos C Kyrpides, Philip Hugenholtz, Kasthuri Venkateswaran
Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov. mBio 15 (4) (2024)
Sowmya Manojna Narasimha, Tanisha Malpani, Omkar S Mohite, J Saketha Nath, Karthik Raman
Understanding flux switching in metabolic networks through an analysis of synthetic lethals. NPJ systems biology and applications 10 (1) (2024)
Aswathy K Raghu, Indumathi Palanikumar, Karthik Raman
Designing function-specific minimal microbiomes from large microbial communities. NPJ systems biology and applications 10 (1) (2024)
Lavanya Raajaraam, Karthik Raman
Modeling Microbial Communities: Perspective and Challenges. ACS synthetic biology 13 (8) (2024)
Georgios Miliotis, Pratyay Sengupta, Asif Hameed, Maria Chuvochina, Francesca McDonagh, Anna C Simpson, Ceth W Parker, Nitin K Singh, Punchappady-Devasya Rekha, Dearbháile Morris, Karthik Raman, Nikos C Kyrpides, Philip Hugenholtz, Kasthuri Venkateswaran
Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov. mBio 15 (4) (2024)
Georgios Miliotis, Pratyay Sengupta, Asif Hameed, Maria Chuvochina, Francesca McDonagh, Anna C Simpson, Ceth W Parker, Nitin K Singh, Punchappady-Devasya Rekha, Dearbháile Morris, Karthik Raman, Nikos C Kyrpides, Philip Hugenholtz, Kasthuri Venkateswaran
Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov. mBio 15 (4) (2024)
Georgios Miliotis, Pratyay Sengupta, Asif Hameed, Maria Chuvochina, Francesca McDonagh, Anna C Simpson, Ceth W Parker, Nitin K Singh, Punchappady-Devasya Rekha, Dearbháile Morris, Karthik Raman, Nikos C Kyrpides, Philip Hugenholtz, Kasthuri Venkateswaran
Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov. mBio (2024)
Aswathy K Raghu, Indumathi Palanikumar, Karthik Raman
Designing function-specific minimal microbiomes from large microbial communities. NPJ systems biology and applications 10 (1) (2024)
Aswathy K Raghu, Indumathi Palanikumar, Karthik Raman
Designing function-specific minimal microbiomes from large microbial communities. NPJ systems biology and applications 10 (1) (2024)
Georgios Miliotis, Pratyay Sengupta, Asif Hameed, Maria Chuvochina, Francesca McDonagh, Anna C Simpson, Ceth W Parker, Nitin K Singh, Punchappady-Devasya Rekha, Dearbháile Morris, Karthik Raman, Nikos C Kyrpides, Philip Hugenholtz, Kasthuri Venkateswaran
Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov. mBio 15 (4) (2024)
Anna C Simpson, Pratyay Sengupta, Flora Zhang, Asif Hameed, Ceth W Parker, Nitin K Singh, Georgios Miliotis, Punchappady-Devasya Rekha, Karthik Raman, Christopher E Mason, Kasthuri Venkateswaran
Phylogenomics, phenotypic, and functional traits of five novel (Earth-derived) bacterial species isolated from the International Space Station and their prevalence in metagenomes. Scientific reports 13 (1) (2023)
Dinesh Kumar Kuppa Baskaran, Shreyansh Umale, Zhichao Zhou, Karthik Raman, Karthik Anantharaman
Metagenome-based metabolic modelling predicts unique microbial interactions in deep-sea hydrothermal plume microbiomes. ISME communications 3 (1) (2023)
Dinesh Kumar Kuppa Baskaran, Shreyansh Umale, Zhichao Zhou, Karthik Raman, Karthik Anantharaman
Metagenome-based metabolic modelling predicts unique microbial interactions in deep-sea hydrothermal plume microbiomes. ISME communications 3 (1) (2023)
Melpakkam Pradeep, Karthik Raman
COWAVE: A labelled COVID-19 wave dataset for building predictive models. PloS one 18 (7) (2023)
Pratyay Sengupta, Shobhan Karthick Muthamilselvi Sivabalan, Amrita Mahesh, Indumathi Palanikumar, Dinesh Kumar Kuppa Baskaran, Karthik Raman
Big Data for a Small World: A Review on Databases and Resources for Studying Microbiomes. Journal of the Indian Institute of Science (2023)
Pratyay Sengupta, Shobhan Karthick Muthamilselvi Sivabalan, Amrita Mahesh, Indumathi Palanikumar, Dinesh Kumar Kuppa Baskaran, Karthik Raman
Big Data for a Small World: A Review on Databases and Resources for Studying Microbiomes. Journal of the Indian Institute of Science (2023)
Ludwig Geistlinger, Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, Clare Grieve, Jennifer Wokaty, Samuel David Gamboa-Tuz, Pratyay Sengupta, Issac Hecht, Aarthi Ravikrishnan, Rafael S Gonçalves, Eric A Franzosa, Karthik Raman, Vincent Carey, Jennifer Beam Dowd, Heidi E Jones, Sean Davis, Nicola Segata, Curtis Huttenhower, Levi Waldron
BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures. Nature biotechnology (2023)
Rachita K Kumar, Nitin Kumar Singh, Sanjaay Balakrishnan, Ceth W Parker, Karthik Raman, Kasthuri Venkateswaran
Metabolic modeling of the International Space Station microbiome reveals key microbial interactions. Microbiome 10 (1) (2022)
Karthik Raman, Himanshu Sinha, Claudia E Vickers, Pablo Iván Nikel
Synthetic biology beyond borders. Microbial biotechnology 14 (6) (2022)
Priyan Bhattacharya, Karthik Raman, Arun K Tangirala
Discovering adaptation-capable biological network structures using control-theoretic approaches. PLoS computational biology 18 (1) (2022)
Anjana Anilkumar Sithara, Devi Priyanka Maripuri, Keerthika Moorthy, Sai Sruthi Amirtha Ganesh, Philge Philip, Shayantan Banerjee, Malvika Sudhakar, Karthik Raman
iCOMIC: a graphical interface-driven bioinformatics pipeline for analyzing cancer omics data. NAR genomics and bioinformatics 4 (3) (2022)
Debomita Chakraborty, Raghunathan Rengaswamy, Karthik Raman
Designing Biological Circuits: From Principles to Applications. ACS synthetic biology 11 (4) (2022)
Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya, Frank T Bergmann, Andrew Finney, Colin S Gillespie, Tomas Helikar, Stefan Hoops, Rahuman S Malik Sheriff, Stuart L Moodie, Ion I Moraru, Chris John Myers, Aurélien Naldi, Brett G Olivier, Sven Sahle, James C Schaff, Lucian P Smith, Maciej J Swat, Denis Thieffry, Leandro Watanabe, Darren J Wilkinson, Michael L Blinov, Kimberly Begley, James R Faeder, Harold F Gómez, Thomas M Hamm, Yuichiro Inagaki, Wolfram Liebermeister, Allyson L Lister, Daniel Lucio, Eric Mjolsness, Carole J Proctor, Karthik Raman, Nicolas Rodriguez, Clifford A Shaffer, Bruce E Shapiro, Joerg Stelling, Neil Swainston, Naoki Tanimura, John Wagner, Martin Meier-Schellersheim, Herbert M Sauro, Bernhard O Palsson, Hamid Bolouri, Hiroaki Kitano, Akira Funahashi, Henning Hermjakob, John C Doyle, Michael Hucka, null null
SBML Level 3: an extensible format for the exchange and reuse of biological models. Molecular systems biology 16 (8) (2021)
Shayantan Banerjee, Karthik Raman, Balaraman Ravindran
Sequence Neighborhoods Enable Reliable Prediction of Pathogenic Mutations in Cancer Genomes. Cancers 13 (10) (2021)
Sahana Gangadharan, Karthik Raman
The art of molecular computing: Whence and whither. BioEssays : news and reviews in molecular, cellular and developmental biology 43 (8) (2021)
Kern Rei Chng, Tarini Shankar Ghosh, Yi Han Tan, Tannistha Nandi, Ivor Russel Lee, Amanda Hui Qi Ng, Chenhao Li, Aarthi Ravikrishnan, Kar Mun Lim, David Lye, Timothy Mark Sebastian Barkham, Karthik Raman, Swaine L Chen, Louis Chai, Barnaby Edward Young, Yunn-Hwen Gan, Niranjan Nagarajan
Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut. Nature ecology & evolution 4 (9) (2020)
Ulf W Liebal, An N T Phan, Malvika Sudhakar, Karthik Raman, Lars M Blank
Machine Learning Applications for Mass Spectrometry-Based Metabolomics. Metabolites 10 (6) (2020)
N T Devika, Karthik Raman
Deciphering the metabolic capabilities of Bifidobacteria using genome-scale metabolic models. Scientific reports 9 (1) (2019)
Aarthi Ravikrishnan, Meghana Nasre, Karthik Raman
Enumerating all possible biosynthetic pathways in metabolic networks. Scientific reports 8 (1) (2018)
Karthik Azhagesan, Balaraman Ravindran, Karthik Raman
Network-based features enable prediction of essential genes across diverse organisms. PloS one 13 (12) (2018)
Nandakumar Rajasekaran, Swaathiratna Suresh, Soundhararajan Gopi, Karthik Raman, Athi N Naganathan
A General Mechanism for the Propagation of Mutational Effects in Proteins. Biochemistry 56 (1) (2016)

Karthik Raman.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Karthik Raman