Michelle A OʼMalley (M A O'Malley, Michelle A O'Malley)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 35

Top Topics

Wastewater Treatment

Top Venues

ACS synthetic biology

Proceedings of the National Academy of Sciences of the United States of America

Nature microbiology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Hugo Doré, Amy R Eisenberg, Emily N Junkins, Gabriel E Leventhal, Anakha Ganesh, Otto X Cordero, Blair G Paul, David L Valentine, Michelle A OʼMalley, Elizabeth G Wilbanks
Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America 121 (9) (2024)
Hugo Doré, Amy R Eisenberg, E N Junkins, Gabriel E Leventhal, Anakha Ganesh, Otto X Cordero, Blair G Paul, David L Valentine, Michelle A OʼMalley, Elizabeth G Wilbanks
Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America 121 (9) (2024)
Vikram Mubayi, Colleen B Ahern, Magdalena Calusinska, Michelle A OʼMalley
Toward a Circular Bioeconomy: Designing Microbes and Polymers for Biodegradation. ACS synthetic biology 13 (7) (2024)
Hugo Doré, Amy R Eisenberg, Emily N Junkins, Gabriel E Leventhal, Anakha Ganesh, Otto X Cordero, Blair G Paul, David L Valentine, Michelle A OʼMalley, Elizabeth G Wilbanks
Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America 121 (9) (2024)
Vikram Mubayi, Colleen B Ahern, Magdalena Calusinska, Michelle A OʼMalley
Toward a Circular Bioeconomy: Designing Microbes and Polymers for Biodegradation. ACS synthetic biology (2024)
Hugo Doré, Amy R Eisenberg, E N Junkins, Gabriel E Leventhal, Anakha Ganesh, Otto X Cordero, Blair G Paul, David L Valentine, Michelle A OʼMalley, Elizabeth G Wilbanks
Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America 121 (9) (2024)
Vikram Mubayi, Colleen B Ahern, Magdalena Calusinska, Michelle A OʼMalley
Toward a Circular Bioeconomy: Designing Microbes and Polymers for Biodegradation. ACS synthetic biology 13 (7) (2024)
Vikram Mubayi, Colleen B Ahern, Magdalena Calusinska, Michelle A OʼMalley
Toward a Circular Bioeconomy: Designing Microbes and Polymers for Biodegradation. ACS synthetic biology 13 (7) (2024)
Hugo Doré, Amy R Eisenberg, Emily N Junkins, Gabriel E Leventhal, Anakha Ganesh, Otto X Cordero, Blair G Paul, David L Valentine, Michelle A OʼMalley, Elizabeth G Wilbanks
Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America 121 (9) (2024)
Elaina M Blair, Jennifer L Brown, Dong Li, Patricia A Holden, Michelle A OʼMalley
Metagenomics analysis yields assembled genomes from prokaryotic anaerobes with polymer-degrading potential. Biotechnology progress (2024)
Thomas S Lankiewicz, Hemant Choudhary, Yu Gao, Bashar Amer, Stephen P Lillington, Patrick A Leggieri, Jennifer L Brown, Candice L Swift, Anna Lipzen, Hyunsoo Na, Mojgan Amirebrahimi, Michael K Theodorou, Edward E K Baidoo, Kerrie Barry, Igor V Grigoriev, Vitaliy I Timokhin, John Gladden, Seema Singh, Jennifer C Mortimer, John Ralph, Blake A Simmons, Steven W Singer, Michelle A OʼMalley
Lignin deconstruction by anaerobic fungi. Nature microbiology (2023)
Thomas S Lankiewicz, Hemant Choudhary, Yu Gao, Bashar Amer, Stephen P Lillington, Patrick A Leggieri, Jennifer L Brown, Candice L Swift, Anna Lipzen, Hyunsoo Na, Mojgan Amirebrahimi, Michael K Theodorou, Edward E K Baidoo, Kerrie Barry, Igor V Grigoriev, Vitaliy I Timokhin, John Gladden, Seema Singh, Jennifer C Mortimer, John Ralph, Blake A Simmons, Steven W Singer, Michelle A OʼMalley
Lignin deconstruction by anaerobic fungi. Nature microbiology (2023)
Susanna Seppälä, Taylor Gierke, Elizabeth E Schauer, Jennifer L Brown, Michelle A OʼMalley
Identification and expression of small multidrug resistance (SMR) transporters in early-branching anaerobic fungi. Protein science : a publication of the Protein Society (2023)
Kellie A Heom, Chatarin Wangsanuwat, Lazarina V Butkovich, Scott C Tam, Annette R Rowe, Michelle A OʼMalley, Siddharth S Dey
Targeted rRNA depletion enables efficient mRNA sequencing in diverse bacterial species and complex co-cultures. mSystems (2023)
Alexey Dementiev, Stephen P Lillington, Shiyan Jin, Youngchang Kim, Robert Jedrzejczak, Karolina Michalska, Andrzej Joachimiak, Michelle A OʼMalley
Structure and enzymatic characterization of CelD endoglucanase from the anaerobic fungus Piromyces finnis. Applied microbiology and biotechnology (2023)
Jennifer L Brown, Matthew A Perisin, Candice L Swift, Marcus Benyamin, Sanchao Liu, Vasanth Singan, Yu Zhang, Emily Savage, Christa Pennacchio, Igor V Grigoriev, Michelle A OʼMalley
Co‑cultivation of anaerobic fungi with Clostridium acetobutylicum bolsters butyrate and butanol production from cellulose and lignocellulose. Journal of industrial microbiology & biotechnology (2022)
Thomas S Lankiewicz, Stephen P Lillington, Michelle A OʼMalley
Enzyme Discovery in Anaerobic Fungi (Neocallimastigomycetes) Enables Lignocellulosic Biorefinery Innovation. Microbiology and molecular biology reviews : MMBR (2022)
Justin I Yoo, Tejas A Navaratna, Patrick Kolence, Michelle A OʼMalley
GPCR-FEX: A Fluoride-Based Selection System for Rapid GPCR Screening and Engineering. ACS synthetic biology 11 (1) (2022)
Patrick A Leggieri, Corey Kerdman-Andrade, Thomas S Lankiewicz, Megan T Valentine, Michelle A OʼMalley
Non-destructive quantification of anaerobic gut fungi and methanogens in co-culture reveals increased fungal growth rate and changes in metabolic flux relative to mono-culture. Microbial cell factories 20 (1) (2021)
St Elmo Wilken, Jonathan M Monk, Patrick A Leggieri, Christopher E Lawson, Thomas S Lankiewicz, Susanna Seppälä, Chris G Daum, Jerry Jenkins, Anna M Lipzen, Stephen J Mondo, Kerrie W Barry, Igor V Grigoriev, John K Henske, Michael K Theodorou, Bernhard O Palsson, Linda R Petzold, Michelle A OʼMalley
Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus. mSystems 6 (1) (2021)
Xuefeng Peng, St Elmo Wilken, Thomas S Lankiewicz, Sean P Gilmore, Jennifer L Brown, John K Henske, Candice L Swift, Asaf Salamov, Kerrie Barry, Igor V Grigoriev, Michael K Theodorou, David L Valentine, Michelle A OʼMalley
Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes. Nature microbiology 6 (4) (2021)
Luke M G Saye, Tejas A Navaratna, James P J Chong, Michelle A OʼMalley, Michael K Theodorou, Matthew Reilly
The Anaerobic Fungi: Challenges and Opportunities for Industrial Lignocellulosic Biofuel Production. Microorganisms 9 (4) (2021)
Candice L Swift, Katherine B Louie, Benjamin P Bowen, Heather M Brewer, Samuel Owen Purvine, Asaf Salamov, Stephen J Mondo, Kevin V Solomon, Aaron T Wright, Trent R Northen, Igor V Grigoriev, Nancy P Keller, Michelle A OʼMalley
Anaerobic gut fungi are an untapped reservoir of natural products. Proceedings of the National Academy of Sciences of the United States of America 118 (18) (2021)
Simon Roux, Blair G Paul, Sarah C Bagby, Stephen Nayfach, Michelle A Allen, Graeme Attwood, Ricardo Cavicchioli, Ludmila Chistoserdova, Robert J Gruninger, Steven James Hallam, Maria E Hernandez, Matthias Hess, Wen-Tso Liu, Tim A McAllister, Michelle A OʼMalley, Xuefeng Peng, Virginia I Rich, Scott R Saleska, Emiley A Eloe-Fadrosh
Ecology and molecular targets of hypermutation in the global microbiome. Nature communications 12 (1) (2021)
Jennifer L Brown, Candice L Swift, Stephen J Mondo, Susanna Seppala, Asaf Salamov, Vasanth Singan, Bernard Henrissat, Elodie Drula, John K Henske, Samantha Lee, Kurt LaButti, Guifen He, Mi Yan, Kerrie Barry, Igor V Grigoriev, Michelle A OʼMalley
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates. Biotechnology for biofuels 14 (1) (2021)
Justin I Yoo, Susanna Seppälä, Michelle A OʼMalley
Engineered fluoride sensitivity enables biocontainment and selection of genetically-modified yeasts. Nature communications 11 (1) (2020)
Live Heldal Hagen, Charles G Brooke, Claire A Shaw, Angela D Norbeck, Hailan Piao, Magnus Øverlie Arntzen, Heather M Brewer, Alex Copeland, Nancy Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle A OʼMalley, Igor V Grigoriev, Susannah G Tringe, Roderick I Mackie, Ljiljana Pasa-Tolic, Phillip Byron Pope, Matthias Hess
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. The ISME journal 15 (2) (2020)
Justin I Yoo, Patrick S Daugherty, Michelle A OʼMalley
Bridging non-overlapping reads illuminates high-order epistasis between distal protein sites in a GPCR. Nature communications 11 (1) (2020)
Candice L Swift, Jennifer L Brown, Susanna Seppälä, Michelle A OʼMalley
Co-cultivation of the anaerobic fungus Anaeromyces robustus with Methanobacterium bryantii enhances transcription of carbohydrate active enzymes. Journal of industrial microbiology & biotechnology 46 (9-10) (2019)
Sean P Gilmore, Thomas S Lankiewicz, St Elmo Wilken, Jennifer L Brown, Jessica A Sexton, John K Henske, Michael K Theodorou, David L Valentine, Michelle A OʼMalley
Top-Down Enrichment Guides in Formation of Synthetic Microbial Consortia for Biomass Degradation. ACS synthetic biology 8 (9) (2019)
Christopher E Lawson, William R Harcombe, Roland Hatzenpichler, Stephen R Lindemann, Frank E Löffler, Michelle A OʼMalley, Héctor García Martín, Brian F Pfleger, Lutgarde Raskin, Ophelia S Venturelli, David Gregory Weissbrodt, Daniel R Noguera, Katherine D McMahon
Common principles and best practices for engineering microbiomes. Nature reviews. Microbiology 17 (12) (2019)
John K Henske, St Elmo Wilken, Kevin V Solomon, Chuck R Smallwood, Vaithiyalingam Shutthanandan, James E Evans, Michael K Theodorou, Michelle A OʼMalley
Metabolic characterization of anaerobic fungi provides a path forward for bioprocessing of crude lignocellulose. Biotechnology and bioengineering 115 (4) (2018)
Justin I Yoo, Michelle A OʼMalley
Tuning Vector Stability and Integration Frequency Elevates Functional GPCR Production and Homogeneity in Saccharomyces cerevisiae. ACS synthetic biology 7 (7) (2018)
John K Henske, Sean P Gilmore, Doriv Knop, Francis J Cunningham, Jessica A Sexton, Chuck R Smallwood, Vaithiyalingam Shutthanandan, James E Evans, Michael K Theodorou, Michelle A OʼMalley
Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus. Biotechnology for biofuels 10 (2017)
Sean P Gilmore, John K Henske, Jessica A Sexton, Kevin V Solomon, Susanna Seppälä, Justin I Yoo, Lauren M Huyett, Abe Pressman, James Z Cogan, Veronika Kivenson, Xuefeng Peng, YerPeng Tan, David L Valentine, Michelle A OʼMalley
Genomic analysis of methanogenic archaea reveals a shift towards energy conservation. BMC genomics 18 (1) (2017)