Miia R Mäkelä (M R Mäkelä, Miia Mäkelä)

ResearcherID Scopus Author ID Loop profile Researcher ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 37

Top Venues

Journal of fungi (Basel, Switzerland)

Biomolecules

Applied and environmental microbiology

Microbial biotechnology

University of Helsinki

University of Helsinki (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Helsinki Sep 01 2017

Finland

Academy of Finland Research Fellow :: Department of Microbiology

University of Helsinki Apr 01 2017 - Aug 31 2017

Finland

Research Scientist

Westerdijk Fungal Biodiversity Institute Oct 01 2016 - Mar 31 2017

Netherlands

Research Scientist

University of Helsinki Dec 01 2010 - Sep 30 2016

Finland

Post-doctoral researcher

Education History

University of Helsinki

Finland

PHD

Publications

Sebastian Theobald, Tammi C Vesth, Elena Geib, Jane L Nybo, Jens Christian Frisvad, Thomas O Larsen, Alan Kuo, Kurt M LaButti, Ellen K Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie W Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S Kun, Ana Carolina Dos Santos Gomes, Bernard Henrissat, Jon K Magnuson, Blake A Simmons, Miia R Mäkelä, Uffe H Mortensen, Igor V Grigoriev, Matthias Brock, Scott E Baker, Ronald P de Vries, Mikael R Andersen
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation. Journal of fungi (Basel, Switzerland) 10 (7) (2024)
Xing Wan, Sazzad Shahrear, Shea Wen Chew, Francisco Vilaplana, Miia R Mäkelä
Discovery of alkaline laccases from basidiomycete fungi through machine learning-based approach. Biotechnology for biofuels and bioproducts 17 (1) (2024)
Riccardo Baroncelli, José F Cobo-Díaz, Tiziano Benocci, Mao Peng, Evy Battaglia, Sajeet Haridas, William Andreopoulos, Kurt M LaButti, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Diane Bauer, Gaétan Le Floch, Miia R Mäkelä, Elodie Drula, Bernard Henrissat, Igor V Grigoriev, Jo Anne Crouch, Ronald P de Vries, Serenella A Sukno, Michael R Thon
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi. GigaScience 13 (2024)
Riccardo Baroncelli, José F Cobo-Díaz, Tiziano Benocci, Mao Peng, Evy Battaglia, Sajeet Haridas, William Andreopoulos, Kurt M LaButti, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Diane Bauer, Gaétan Le Floch, Miia R Mäkelä, Elodie Drula, Bernard Henrissat, Igor V Grigoriev, Jo Anne Crouch, Ronald P de Vries, Serenella A Sukno, Michael R Thon
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi. GigaScience 13 (2024)
Sebastian Theobald, Tammi C Vesth, Elena Geib, Jane L Nybo, Jens Christian Frisvad, Thomas O Larsen, Alan Kuo, Kurt M LaButti, Ellen K Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie W Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S Kun, Ana Carolina Dos Santos Gomes, Bernard Henrissat, Jon K Magnuson, Blake A Simmons, Miia R Mäkelä, Uffe H Mortensen, Igor V Grigoriev, Matthias Brock, Scott E Baker, Ronald P de Vries, Mikael R Andersen
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation. Journal of fungi (Basel, Switzerland) 10 (7) (2024)
Riccardo Baroncelli, José F Cobo-Díaz, Tiziano Benocci, Mao Peng, Evy Battaglia, Sajeet Haridas, William Andreopoulos, Kurt M LaButti, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Diane Bauer, Gaétan Le Floch, Miia R Mäkelä, Elodie Drula, Bernard Henrissat, Igor V Grigoriev, Jo Anne Crouch, Ronald P de Vries, Serenella A Sukno, Michael R Thon
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi. GigaScience 13 (2024)
Sebastian Theobald, Tammi C Vesth, Elena Geib, Jane L Nybo, Jens Christian Frisvad, Thomas O Larsen, Alan Kuo, Kurt M LaButti, Ellen K Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie W Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S Kun, Ana Carolina Dos Santos Gomes, Bernard Henrissat, Jon K Magnuson, Blake A Simmons, Miia R Mäkelä, Uffe H Mortensen, Igor V Grigoriev, Matthias Brock, Scott E Baker, Ronald P de Vries, Mikael R Andersen
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation. Journal of fungi (Basel, Switzerland) 10 (7) (2024)
Astrid Müller, Li Xu, Claudia Heine, Tila Flach, Miia R Mäkelä, Ronald P de Vries
Genome Mining Reveals a Surprising Number of Sugar Reductases in Aspergillus niger . Journal of fungi (Basel, Switzerland) 9 (12) (2023)
Jiali Meng, Miia R Mäkelä, Ronald P de Vries
Identification of an l-Arabitol Transporter from Aspergillus niger . Biomolecules 13 (2) (2023)
Astrid Müller, Li Xu, Claudia Heine, Tila Flach, Miia R Mäkelä, Ronald P de Vries
Genome Mining Reveals a Surprising Number of Sugar Reductases in Aspergillus niger . Journal of fungi (Basel, Switzerland) 9 (12) (2023)
Astrid Müller, Li Xu, Claudia Heine, Tila Flach, Miia R Mäkelä, Ronald P de Vries
Genome Mining Reveals a Surprising Number of Sugar Reductases in Aspergillus niger . Journal of fungi (Basel, Switzerland) 9 (12) (2023)
Jiali Meng, Miia R Mäkelä, Ronald P de Vries
Identification of an l-Arabitol Transporter from Aspergillus niger . Biomolecules 13 (2) (2023)
Jiali Meng, Miia R Mäkelä, Ronald P de Vries
Identification of an l-Arabitol Transporter from Aspergillus niger . Biomolecules 13 (2) (2023)
Jiali Meng, Miia R Mäkelä, Ronald P de Vries
Identification of an l-Arabitol Transporter from Aspergillus niger . Biomolecules 13 (2) (2023)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Jiali Meng, Zoltán Németh, Mao Peng, Erzsébet Fekete, Sandra Garrigues, Anna Lipzen, Vivian Ng, Emily Savage, Yu Zhang, Igor V Grigoriev, Miia R Mäkelä, Levente Karaffa, Ronald P de Vries
GalR, GalX and AraR co-regulate d-galactose and l-arabinose utilization in Aspergillus nidulans. Microbial biotechnology 15 (6) (2022)
Mila Marinovíc, Marcos Di Falco, Maria Victoria Aguilar Pontes, Andras Gorzsas, Adrian Tsang, Ronald P de Vries, Miia R Mäkelä, Kristiina Hildén
Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi: Obba rivulosa and Gelatoporia subvermispora . Biomolecules 12 (8) (2022)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
V Viriato, Miia R Mäkelä, J E Kowalczyk, Caio S Ballarin, P P Loiola, M C N Andrade
Organic residues from agricultural and forest companies in Brazil as useful substrates for cultivation of the edible mushroom Pleurotus ostreatus. Letters in applied microbiology (2021)
Joanna E Kowalczyk, Shreya Saha, Miia R Mäkelä
Application of CRISPR/Cas9 Tools for Genome Editing in the White-Rot Fungus Dichomitus squalens. Biomolecules 11 (10) (2021)
Ronnie J M Lubbers, Ronald P de Vries, Jaap Visser, Kristiina S Hildén, Miia R Mäkelä, Ronald P de Vries
Discovery and Functional Analysis of a Salicylic Acid Hydroxylase from Aspergillus niger. Applied and environmental microbiology 87 (6) (2021)
Sandra Garrigues, Roland S Kun, Mao Peng, Birgit S Gruben, Isabelle Benoit Gelber, Miia R Mäkelä, Ronald P de Vries
The Cultivation Method Affects the Transcriptomic Response of Aspergillus niger to Growth on Sugar Beet Pulp. Microbiology spectrum 9 (1) (2021)
Janne Wallenius, Jussi Kontro, Christina Lyra, Jaana Kuuskeri, Xing Wan, Mika A Kähkönen, Irshad Baig, Paul C J Kamer, Jussi Sipilä, Miia R Mäkelä, Paula Nousiainen, Kristiina S Hildén
Depolymerization of biorefinery lignin by improved laccases of the white-rot fungus Obba rivulosa. Microbial biotechnology 14 (5) (2021)
Paul Daly, Mao Peng, Hugh D Mitchell, Young-Mo Kim, Charles Ansong, Heather Brewer, Peter de Gijsel, Mary S Lipton, Lye Meng Markillie, Carrie D Nicora, Galya Orr, Ad Wiebenga, Kristiina S Hildén, Mirjam A Kabel, Scott E Baker, Miia R Mäkelä, Ronald P de Vries
Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation. Environmental microbiology 22 (3) (2020)
Inge Kjærbølling, Tammi Vesth, Jens Christian Frisvad, Jane L Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen K Lyhne, Martin E Kogle, Ad Wiebenga, Roland S Kun, Ronnie J M Lubbers, Miia R Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt M LaButti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A Simmons, John M Gladden, Bernard Henrissat, Uffe Hasbro Mortensen, Thomas Ostenfeld Larsen, Ronald P de Vries, Igor V Grigoriev, Masayuki Machida, Scott E Baker, Mikael Rørdam Andersen
A comparative genomics study of 23 Aspergillus species from section Flavi. Nature communications 11 (1) (2020)
Paul Daly, Mao Peng, Marcos Di Falco, Anna Lipzen, Mei Wang, Vivian Ng, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Ronald P de Vries
Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens. Applied and environmental microbiology 85 (23) (2019)
Sara Casado López, Mao Peng, Paul Daly, Bill Andreopoulos, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, Steven Ahrendt, Vivian Ng, Kerrie Barry, Chris Daum, Igor V Grigoriev, Kristiina S Hildén, Miia R Mäkelä, Ronald P de Vries
Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens. Microbiology resource announcements 8 (18) (2019)
Paul Daly, Sara Casado López, Mao Peng, Christopher S Lancefield, Samuel O Purvine, Young-Mo Kim, Erika M Zink, Alice Dohnalkova, Vasanth R Singan, Anna Lipzen, David Dilworth, Mei Wang, Vivian Ng, Errol Robinson, Galya Orr, Scott E Baker, Pieter C A Bruijnincx, Kristiina S Hildén, Igor V Grigoriev, Miia R Mäkelä, Ronald P de Vries
Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environmental microbiology 20 (11) (2018)
Miia R Mäkelä, Mao Peng, Zoraide Granchi, Thomas Chin-A-Woeng, Rosa Hegi, Sake I van Pelt, Steven Ahrendt, Robert Riley, Matthieu Hainaut, Bernard Henrissat, Igor V Grigoriev, Ronald P de Vries, Kristiina S Hildén
Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga. Genome announcements 6 (14) (2018)
Miia R Mäkelä, María Victoria Aguilar-Pontes, Diana van Rossen-Uffink, Mao Peng, Ronald P de Vries
The fungus Aspergillus niger consumes sugars in a sequential manner that is not mediated by the carbon catabolite repressor CreA. Scientific reports 8 (1) (2018)
Miia R Mäkelä, Adiphol Dilokpimol, Salla M Koskela, Jaana Kuuskeri, Ronald P de Vries, Kristiina Hildén
Characterization of a feruloyl esterase from Aspergillus terreus facilitates the division of fungal enzymes from Carbohydrate Esterase family 1 of the carbohydrate-active enzymes (CAZy) database. Microbial biotechnology 11 (5) (2018)
Sara Casado López, Mao Peng, Tedros Yonatan Issak, Paul Daly, Ronald P de Vries, Miia R Mäkelä
Induction of Genes Encoding Plant Cell Wall-Degrading Carbohydrate-Active Enzymes by Lignocellulose-Derived Monosaccharides and Cellobiose in the White-Rot Fungus Dichomitus squalens. Applied and environmental microbiology 84 (11) (2018)
Tammi C Vesth, Jane L Nybo, Sebastian Theobald, Jens Christian Frisvad, Thomas Ostenfeld Larsen, Kristian Fog Nielsen, Jakob B Hoof, Julian Brandl, Asaf Salamov, Robert Riley, John M Gladden, Pallavi Phatale, Morten T Nielsen, Ellen K Lyhne, Martin E Kogle, Kimchi Strasser, Erin McDonnell, Kerrie Barry, Alicia Clum, Cindy Chen, Kurt LaButti, Sajeet Haridas, Matt Nolan, Laura Sandor, Alan Kuo, Anna Lipzen, Matthieu Hainaut, Elodie Drula, Adrian Tsang, Jon K Magnuson, Bernard Henrissat, Ad Wiebenga, Blake A Simmons, Miia R Mäkelä, Ronald P de Vries, Igor V Grigoriev, Uffe Hasbro Mortensen, Scott E Baker, Mikael Rørdam Andersen
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri. Nature genetics 50 (12) (2018)
Zoraide Granchi, Mao Peng, Thomas Chi-A-Woeng, Ronald P de Vries, Kristiina S Hildén, Miia R Mäkelä
Genome Sequence of the Basidiomycete White-Rot Fungus Trametes pubescens FBCC735. Genome announcements 5 (8) (2017)

Miia R Mäkelä.css-eqlu8i{font-size:small;padding-left:4px;} (M R Mäkelä, Miia Mäkelä)

Publication Activity (10 Years)

Top Topics

Top Venues

Miia R Mäkelä (M R Mäkelä, Miia Mäkelä)