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Ronald P de Vries (Ronald P De Vries, R P de Vries)

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Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 43

Top Venues

Journal of fungi (Basel, Switzerland)

Biomolecules

Applied and environmental microbiology

BMC genomics

Westerdijk Fungal Biodiversity Institute

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Westerdijk Fungal Biodiversity Institute May 1o 2009

Netherlands

Group Leader :: Fungal Physiology

Publications

Dujuan Liu, Sandra Garrigues, Ronald P de Vries
Heterologous protein production in filamentous fungi. Applied microbiology and biotechnology (2023)
Sonia Salazar-Cerezo, Ronald P de Vries, Sandra Garrigues
Strategies for the Development of Industrial Fungal Producing Strains. Journal of fungi (Basel, Switzerland) 9 (8) (2023)
Jiali Meng, Miia R Mäkelä, Ronald P de Vries
Identification of an l-Arabitol Transporter from Aspergillus niger . Biomolecules 13 (2) (2023)
Jiali Meng, Miia R Mäkelä, Ronald P de Vries
Identification of an l-Arabitol Transporter from Aspergillus niger . Biomolecules 13 (2) (2023)
Roland S Kun, Sonia Salazar-Cerezo, Mao Peng, Yu Zhang, Emily Savage, Anna Lipzen, Vivian Ng, Igor V Grigoriev, Ronald P de Vries, Sandra Garrigues
The Amylolytic Regulator AmyR of Aspergillus niger Is Involved in Sucrose and Inulin Utilization in a Culture-Condition-Dependent Manner. Journal of fungi (Basel, Switzerland) 9 (4) (2023)
Roland S Kun, Sonia Salazar-Cerezo, Mao Peng, Yu Zhang, Emily Savage, Anna Lipzen, Vivian Ng, Igor V Grigoriev, Ronald P de Vries, Sandra Garrigues
The Amylolytic Regulator AmyR of Aspergillus niger Is Involved in Sucrose and Inulin Utilization in a Culture-Condition-Dependent Manner. Journal of fungi (Basel, Switzerland) 9 (4) (2023)
Roland S Kun, Sonia Salazar-Cerezo, Mao Peng, Yu Zhang, Emily Savage, Anna Lipzen, Vivian Ng, Igor V Grigoriev, Ronald P de Vries, Sandra Garrigues
The Amylolytic Regulator AmyR of Aspergillus niger Is Involved in Sucrose and Inulin Utilization in a Culture-Condition-Dependent Manner. Journal of fungi (Basel, Switzerland) 9 (4) (2023)
Jiali Meng, Miia R Mäkelä, Ronald P de Vries
Identification of an l-Arabitol Transporter from Aspergillus niger . Biomolecules 13 (2) (2023)
Jiajia Li, Ad Wiebenga, Anna Lipzen, Vivian Ng, Sravanthi Tejomurthula, Yu Zhang, Igor V Grigoriev, Mao Peng, Ronald P de Vries
Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi. Journal of fungi (Basel, Switzerland) 9 (8) (2023)
Sandra Garrigues, Mao Peng, Roland S Kun, Ronald P de Vries
Non-homologous end-joining-deficient filamentous fungal strains mitigate the impact of off-target mutations during the application of CRISPR/Cas9. mBio (2023)
Jiali Meng, Miia R Mäkelä, Ronald P de Vries
Identification of an l-Arabitol Transporter from Aspergillus niger . Biomolecules 13 (2) (2023)
Roland S Kun, Sonia Salazar-Cerezo, Mao Peng, Yu Zhang, Emily Savage, Anna Lipzen, Vivian Ng, Igor V Grigoriev, Ronald P de Vries, Sandra Garrigues
The Amylolytic Regulator AmyR of Aspergillus niger Is Involved in Sucrose and Inulin Utilization in a Culture-Condition-Dependent Manner. Journal of fungi (Basel, Switzerland) 9 (4) (2023)
Adiphol Dilokpimol, Bart Verkerk, Xinxin Li, Annie Bellemare, Mathieu Lavallee, Matthias Frommhagen, Emilie Nørmølle Underlin, Mirjam A Kabel, Justin Powlowski, Adrian Tsang, Ronald P de Vries
Screening of novel fungal Carbohydrate Esterase family 1 enzymes identifies three novel dual feruloyl/acetyl xylan esterases. FEBS letters 596 (15) (2022)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Nancy Coconi Linares, Xinxin Li, Adiphol Dilokpimol, Ronald P de Vries
Comparative characterization of nine novel GH51, GH54 and GH62 α-l-arabinofuranosidases from Penicillium subrubescens. FEBS letters 596 (3) (2022)
Jiali Meng, Zoltán Németh, Mao Peng, Erzsébet Fekete, Sandra Garrigues, Anna Lipzen, Vivian Ng, Emily Savage, Yu Zhang, Igor V Grigoriev, Miia R Mäkelä, Levente Karaffa, Ronald P de Vries
GalR, GalX and AraR co-regulate d-galactose and l-arabinose utilization in Aspergillus nidulans. Microbial biotechnology 15 (6) (2022)
Mila Marinovíc, Marcos Di Falco, Maria Victoria Aguilar Pontes, Andras Gorzsas, Adrian Tsang, Ronald P de Vries, Miia R Mäkelä, Kristiina Hildén
Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi: Obba rivulosa and Gelatoporia subvermispora . Biomolecules 12 (8) (2022)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Jiajia Li, Tania Chroumpi, Sandra Garrigues, Roland S Kun, Jiali Meng, Sonia Salazar-Cerezo, Maria Victoria Aguilar Pontes, Yu Zhang, Sravanthi Tejomurthula, Anna Lipzen, Vivian Ng, Chaevien S Clendinen, Nikola Tolić, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Berend Snel, Mao Peng, Ronald P de Vries
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Ronnie J M Lubbers, Ronald P de Vries, Jaap Visser, Kristiina S Hildén, Miia R Mäkelä, Ronald P de Vries
Discovery and Functional Analysis of a Salicylic Acid Hydroxylase from Aspergillus niger. Applied and environmental microbiology 87 (6) (2021)
Sandra Garrigues, Roland S Kun, Ronald P de Vries
Genetic barcodes allow traceability of CRISPR/Cas9-derived Aspergillus niger strains without affecting their fitness. Current genetics 67 (4) (2021)
Roland S Kun, Sandra Garrigues, Marcos Di Falco, Adrian Tsang, Ronald P de Vries
Blocking utilization of major plant biomass polysaccharides leads Aspergillus niger towards utilization of minor components. Microbial biotechnology 14 (4) (2021)
Ronnie J M Lubbers, Adiphol Dilokpimol, Paula A Nousiainen, Răzvan C Cioc, Jaap Visser, Pieter C A Bruijnincx, Ronald P de Vries
Vanillic acid and methoxyhydroquinone production from guaiacyl units and related aromatic compounds using Aspergillus niger cell factories. Microbial cell factories 20 (1) (2021)
Sandra Garrigues, Roland S Kun, Mao Peng, Birgit S Gruben, Isabelle Benoit Gelber, Miia R Mäkelä, Ronald P de Vries
The Cultivation Method Affects the Transcriptomic Response of Aspergillus niger to Growth on Sugar Beet Pulp. Microbiology spectrum 9 (1) (2021)
Paul Daly, Mao Peng, Hugh D Mitchell, Young-Mo Kim, Charles Ansong, Heather Brewer, Peter de Gijsel, Mary S Lipton, Lye Meng Markillie, Carrie D Nicora, Galya Orr, Ad Wiebenga, Kristiina S Hildén, Mirjam A Kabel, Scott E Baker, Miia R Mäkelä, Ronald P de Vries
Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation. Environmental microbiology 22 (3) (2020)
Inge Kjærbølling, Tammi Vesth, Jens Christian Frisvad, Jane L Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen K Lyhne, Martin E Kogle, Ad Wiebenga, Roland S Kun, Ronnie J M Lubbers, Miia R Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt M LaButti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A Simmons, John M Gladden, Bernard Henrissat, Uffe Hasbro Mortensen, Thomas Ostenfeld Larsen, Ronald P de Vries, Igor V Grigoriev, Masayuki Machida, Scott E Baker, Mikael Rørdam Andersen
A comparative genomics study of 23 Aspergillus species from section Flavi. Nature communications 11 (1) (2020)
Vera Meyer, Evelina Y Basenko, J Philipp Benz, Gerhard H Braus, Mark X Caddick, Michael Csukai, Ronald P de Vries, Drew Endy, Jens Christian Frisvad, Nina Gunde Cimerman, Thomas Haarmann, Yitzhak Hadar, Kim Hansen, Robert I Johnson, Nancy P Keller, Nada Kraševec, Uffe Hasbro Mortensen, Rolando Perez, Arthur F J Ram, Eric Record, Phil Ross, Volha Shapaval, Charlotte Steiniger, Hans van den Brink, Jolanda M van Munster, Oded Yarden, Han A B Wösten
Growing a circular economy with fungal biotechnology: a white paper. Fungal biology and biotechnology 7 (2020)
Tiziano Benocci, Maria Victoria Aguilar-Pontes, Roland Sándor Kun, Ronnie J M Lubbers, Kathleen Lail, Mei Wang, Anna Lipzen, Vivian Ng, Igor V Grigoriev, Bernhard Seiboth, Paul Daly, Ronald P de Vries
Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass. Biotechnology for biofuels 12 (2019)
Paul Daly, Mao Peng, Marcos Di Falco, Anna Lipzen, Mei Wang, Vivian Ng, Igor V Grigoriev, Adrian Tsang, Miia R Mäkelä, Ronald P de Vries
Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens. Applied and environmental microbiology 85 (23) (2019)
Sara Casado López, Mao Peng, Paul Daly, Bill Andreopoulos, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, Steven Ahrendt, Vivian Ng, Kerrie Barry, Chris Daum, Igor V Grigoriev, Kristiina S Hildén, Miia R Mäkelä, Ronald P de Vries
Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens. Microbiology resource announcements 8 (18) (2019)
R J M Lubbers, A J Liwanag, M Peng, A Dilokpimol, I Benoit-Gelber, Ronald P de Vries
Evolutionary adaptation of Aspergillus niger for increased ferulic acid tolerance. Journal of applied microbiology 128 (3) (2019)
Claire Khosravi, Joanna E Kowalczyk, Tania Chroumpi, Evy Battaglia, Maria-Victoria Aguilar Pontes, Mao Peng, Ad Wiebenga, Vivian Ng, Anna Lipzen, Guifen He, Diane Bauer, Igor V Grigoriev, Ronald P de Vries
Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network. BMC genomics 20 (1) (2019)
Ana Carolina Dos Santos Gomes, Daniel Falkoski, Evy Battaglia, Mao Peng, Maira Nicolau de Almeida, Nancy Coconi Linares, Jean-Paul Meijnen, Jaap Visser, Ronald P de Vries
Myceliophthora thermophila Xyr1 is predominantly involved in xylan degradation and xylose catabolism. Biotechnology for biofuels 12 (2019)
Paul Daly, Sara Casado López, Mao Peng, Christopher S Lancefield, Samuel O Purvine, Young-Mo Kim, Erika M Zink, Alice Dohnalkova, Vasanth R Singan, Anna Lipzen, David Dilworth, Mei Wang, Vivian Ng, Errol Robinson, Galya Orr, Scott E Baker, Pieter C A Bruijnincx, Kristiina S Hildén, Igor V Grigoriev, Miia R Mäkelä, Ronald P de Vries
Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environmental microbiology 20 (11) (2018)
Miia R Mäkelä, María Victoria Aguilar-Pontes, Diana van Rossen-Uffink, Mao Peng, Ronald P de Vries
The fungus Aspergillus niger consumes sugars in a sequential manner that is not mediated by the carbon catabolite repressor CreA. Scientific reports 8 (1) (2018)
Claire Khosravi, Evy Battaglia, Roland S Kun, Sacha Dalhuijsen, Jaap Visser, María Victoria Aguilar-Pontes, Miaomiao Zhou, Heino M Heyman, Young-Mo Kim, Scott E Baker, Ronald P de Vries
Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans. BMC genomics 19 (1) (2018)
Sara Casado López, Mao Peng, Tedros Yonatan Issak, Paul Daly, Ronald P de Vries, Miia R Mäkelä
Induction of Genes Encoding Plant Cell Wall-Degrading Carbohydrate-Active Enzymes by Lignocellulose-Derived Monosaccharides and Cellobiose in the White-Rot Fungus Dichomitus squalens. Applied and environmental microbiology 84 (11) (2018)
Simona Varriale, Jos Houbraken, Zoraide Granchi, Olimpia Pepe, Gabriella Cerullo, Valeria Ventorino, Thomas Chin-A-Woeng, Martin Meijer, Robert Riley, Igor V Grigoriev, Bernard Henrissat, Ronald P de Vries, Vincenza Faraco
Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion. Mycologia 110 (2) (2018)
Joanna E Kowalczyk, Ronnie J M Lubbers, Mao Peng, Evy Battaglia, Jaap Visser, Ronald P de Vries
Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin. Scientific reports 7 (1) (2017)
Birgit S Gruben, Miia R Mäkelä, Joanna E Kowalczyk, Miaomiao Zhou, Isabelle Benoit-Gelber, Ronald P de Vries
Expression-based clustering of CAZyme-encoding genes of Aspergillus niger. BMC genomics 18 (1) (2017)
Claire Khosravi, Roland Sándor Kun, Jaap Visser, María Victoria Aguilar-Pontes, Ronald P de Vries, Evy Battaglia
In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR. BMC microbiology 17 (1) (2017)

Ronald P de Vries.css-eqlu8i{font-size:small;padding-left:4px;} (Ronald P De Vries, R P de Vries)

Publication Activity (10 Years)

Top Topics

Top Venues

Ronald P de Vries (Ronald P De Vries, R P de Vries)