Xiaowei Zhuang

ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 37

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Science (New York, N.Y.)

Nature

bioRxiv : the preprint server for biology

Howard Hughes Medical Institute

University of California at Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Howard Hughes Medical Institute

United States

Investigator

Harvard University

United States

Professor :: Department of Chemistry and Chemical Biology

Education History

University of California at Berkeley

United States

PHD :: Department of Physics

Publications

Shiwei Liu, Pu Zheng, Cosmos Yuqi Wang, Bojing Blair Jia, Nathan R Zemke, Bing Ren, Xiaowei Zhuang
Cell-type-specific 3D-genome organization and transcription regulation in the brain. bioRxiv : the preprint server for biology (2023)
Zizhen Yao, Cindy T J van Velthoven, Michael Kunst, Meng Zhang, Delissa A McMillen, Changkyu Lee, Won Jung, Jeff Goldy, Aliya Abdelhak, Pamela Baker, Eliza R Barkan, Darren Bertagnolli, Jazmin Campos, Daniel Carey, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Sakshi Chavan, Min Chen, Michael Clark, Jennie Close, Kirsten Crichton, Scott Daniel, Tim Dolbeare, Lauren Ellingwood, James C Gee, Alexandra Glandon, Jessica Gloe, Joshua Gould, James Gray, Nathan Guilford, Junitta B Guzman, Daniel Hirschstein, Windy Ho, Kelly Jin, Matthew Kroll, Kanan Lathia, Arielle Leon, Brian R Long, Zoe Maltzer, Naomi X Martin, Rachel McCue, Emma Meyerdierks, Thuc Nghi Nguyen, Trangthanh H Pham, Christine Rimorin, Augustin Ruiz, Nadiya Shapovalova, Clifford R Slaughterbeck, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Nasmil Valera Cuevas, Katherine Wadhwani, Katelyn Kiick, Boaz P Levi, Colin Farrell, Carol L Thompson, Shoaib Mufti, Chelsea M Pagan, Lauren Kruse, Nick Dee, Susan M Sunkin, Christina Kouskouti, Michael J Hawrylycz, Jack Waters, Lydia Ng, Kimberly A Smith, Bosiljka Tasic, Xiaowei Zhuang, Hongkui Zeng
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain. bioRxiv : the preprint server for biology (2023)
Meng Zhang, Xingjie Pan, Won Jung, Aaron Halpern, Stephen W Eichhorn, Zhiyun Lei, Limor Cohen, Kimberly A Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng, Xiaowei Zhuang
A molecularly defined and spatially resolved cell atlas of the whole mouse brain. bioRxiv : the preprint server for biology (2023)
Zizhen Yao, Cindy T J van Velthoven, Michael Kunst, Meng Zhang, Delissa A McMillen, Changkyu Lee, Won Jung, Jeff Goldy, Aliya Abdelhak, Matthew Aitken, Katherine Baker, Pamela Baker, Eliza Barkan, Darren Bertagnolli, Ashwin Bhandiwad, Cameron Bielstein, Prajal Bishwakarma, Jazmin Campos, Daniel Carey, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Sakshi Chavan, Min Chen, Michael Clark, Jennie Close, Kirsten Crichton, Scott Daniel, Peter DiValentin, Tim Dolbeare, Lauren Ellingwood, Elysha Fiabane, Timothy Fliss, James Gee, James Gerstenberger, Alexandra Glandon, Jessica Gloe, Joshua Gould, James Gray, Nathan Guilford, Junitta Guzman, Daniel Hirschstein, Windy Ho, Marcus Hooper, Mike Huang, Madison T Hupp, Kelly Jin, Matthew Kroll, Kanan Lathia, Arielle Leon, Su Li, Brian R Long, Zach Madigan, Jessica Malloy, Jocelin Malone, Zoe Maltzer, Naomi Martin, Rachel McCue, Ryan McGinty, Nicholas Mei, Jose Melchor, Emma Meyerdierks, Tyler Mollenkopf, Skyler Moonsman, Thuc Nghi Nguyen, Sven Otto, Trangthanh H Pham, Christine Rimorin, Augustin Ruiz, Raymond E A Sanchez, Lane Sawyer, Nadiya Shapovalova, Noah Shepard, Cliff Slaughterbeck, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Nasmil Valera Cuevas, Shane Vance, Katherine Wadhwani, Katelyn Ward, Boaz P Levi, Colin Farrell, Rob Young, Brian Staats, Ming-Qiang Michael Wang, Carol L Thompson, Shoaib Mufti, Chelsea M Pagan, Lauren Kruse, Nick Dee, Susan M Sunkin, Luke Esposito, Michael J Hawrylycz, Jack Waters, Lydia Ng, Kimberly A Smith, Bosiljka Tasic, Xiaowei Zhuang, Hongkui Zeng
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain. Nature 624 (7991) (2023)
Shiwei Liu, Pu Zheng, Cosmos Yuqi Wang, Bojing Blair Jia, Nathan R Zemke, Bing Ren, Xiaowei Zhuang
Cell-type-specific 3D-genome organization and transcription regulation in the brain. bioRxiv : the preprint server for biology (2023)
Meng Zhang, Xingjie Pan, Won Jung, Aaron R Halpern, Stephen W Eichhorn, Zhiyun Lei, Limor Cohen, Kimberly A Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng, Xiaowei Zhuang
Molecularly defined and spatially resolved cell atlas of the whole mouse brain. Nature 624 (7991) (2023)
Jessica A Osterhout, Vikrant Kapoor, Stephen W Eichhorn, Eric Vaughn, Jeffrey D Moore, Ding Liu, Dean Lee, Laura A DeNardo, Liqun Luo, Xiaowei Zhuang, Catherine Dulac
A preoptic neuronal population controls fever and appetite during sickness. Nature 606 (7916) (2022)
Ruobo Zhou, Boran Han, Roberta Nowak, Yunzhe Lu, Evan Heller, Chenglong Xia, Athar H Chishti, Velia M Fowler, Xiaowei Zhuang
Proteomic and functional analyses of the periodic membrane skeleton in neurons. Nature communications 13 (1) (2022)
Rongxin Fang, Chenglong Xia, Jennie L Close, Meng Zhang, Jiang He, Zhengkai Huang, Aaron R Halpern, Brian R Long, Jeremy A Miller, Ed S Lein, Xiaowei Zhuang
Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH. Science (New York, N.Y.) 377 (6601) (2022)
Xiaowei Zhuang
Spatially resolved single-cell genomics and transcriptomics by imaging. Nature methods 18 (1) (2021)
Hui Huang, Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern, Mattia Conte, Yanxiao Zhang, Simona Bianco, Andrea Maria Chiariello, Miao Yu, Rong Hu, Melodi Tastemel, Ivan Juric, Ming Hu, Mario Nicodemi, Xiaowei Zhuang, Bing Ren
CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains. Nature genetics 53 (7) (2021)
Renchao Chen, Timothy R Blosser, Mohamed Nadhir Djekidel, Junjie Hao, Aritra Bhattacherjee, Wenqiang Chen, Luis M Tuesta, Xiaowei Zhuang, Yi Zhang
Decoding molecular and cellular heterogeneity of mouse nucleus accumbens. Nature neuroscience 24 (12) (2021)
Meng Zhang, Stephen W Eichhorn, Brian Zingg, Zizhen Yao, Kaelan Cotter, Hongkui Zeng, Hongwei Dong, Xiaowei Zhuang
Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH. Nature 598 (7879) (2021)
Tommaso Biancalani, Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger, Neriman Tokcan, Charles R Vanderburg, Åsa Segerstolpe, Meng Zhang, Inbal Avraham-Davidi, Sanja Vickovic, Mor Nitzan, Sai Ma, Ayshwarya Subramanian, Michal Lipinski, Jason Buenrostro, Nik Bear Brown, Duccio Fanelli, Xiaowei Zhuang, Evan Z Macosko, Aviv Regev
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram. Nature methods 18 (11) (2021)
Brendan F Miller, Dhananjay Bambah-Mukku, Catherine Dulac, Xiaowei Zhuang, Jean Fan
Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities. Genome research 31 (10) (2021)
Ye Fu, Xiaowei Zhuang
m6A-binding YTHDF proteins promote stress granule formation. Nature chemical biology 16 (9) (2020)
Ruobo Zhou, Boran Han, Chenglong Xia, Xiaowei Zhuang
Membrane-associated periodic skeleton is a signaling platform for RTK transactivation in neurons. Science (New York, N.Y.) 365 (6456) (2020)
Yaron M Sigal, Haneui Bae, Luke J Bogart, Takao K Hensch, Xiaowei Zhuang
Structural maturation of cortical perineuronal nets and their perforating synapses revealed by superresolution imaging. Proceedings of the National Academy of Sciences of the United States of America 116 (14) (2019)
Anton Sabantsev, Robert F Levendosky, Xiaowei Zhuang, Gregory D Bowman, Sebastian Deindl
Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling. Nature communications 10 (1) (2019)
Damaris N Lorenzo, Alexandra Badea, Ruobo Zhou, Peter J Mohler, Xiaowei Zhuang, Vann Bennett
βII-spectrin promotes mouse brain connectivity through stabilizing axonal plasma membranes and enabling axonal organelle transport. Proceedings of the National Academy of Sciences of the United States of America 116 (31) (2019)
Guiping Wang, David J Simon, Zhuhao Wu, Deanna M Belsky, Evan Heller, Melanie K O'Rourke, Nicholas T Hertz, Henrik Molina, Guisheng Zhong, Marc Tessier-Lavigne, Xiaowei Zhuang
Structural plasticity of actin-spectrin membrane skeleton and functional role of actin and spectrin in axon degeneration. eLife 8 (2019)
Chong Wang, Tian Lu, George Emanuel, Hazen P Babcock, Xiaowei Zhuang
Imaging-based pooled CRISPR screening reveals regulators of lncRNA localization. Proceedings of the National Academy of Sciences of the United States of America 116 (22) (2019)
Chenglong Xia, Jean Fan, George Emanuel, Junjie Hao, Xiaowei Zhuang
Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression. Proceedings of the National Academy of Sciences of the United States of America 116 (39) (2019)
Chenglong Xia, Hazen P Babcock, Jeffrey R Moffitt, Xiaowei Zhuang
Multiplexed detection of RNA using MERFISH and branched DNA amplification. Scientific reports 9 (1) (2019)
Bogdan Bintu, Leslie J Mateo, Jun-Han Su, Nicholas A Sinnott-Armstrong, Mirae Parker, Seon Kinrot, Kei Yamaya, Alistair Nicol Boettiger, Xiaowei Zhuang
Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells. Science (New York, N.Y.) 362 (6413) (2018)
Yaron M Sigal, Ruobo Zhou, Xiaowei Zhuang
Visualizing and discovering cellular structures with super-resolution microscopy. Science (New York, N.Y.) 361 (6405) (2018)
Guiping Wang, Jeffrey R Moffitt, Xiaowei Zhuang
Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy. Scientific reports 8 (1) (2018)
Chung Yu Chan, Anthony M Pedley, Doory Kim, Chenglong Xia, Xiaowei Zhuang, Stephen J Benkovic
Microtubule-directed transport of purine metabolons drives their cytosolic transit to mitochondria. Proceedings of the National Academy of Sciences of the United States of America 115 (51) (2018)
Jeffrey R Moffitt, Dhananjay Bambah-Mukku, Stephen W Eichhorn, Eric Vaughn, Karthik Shekhar, Julio D Perez, Nimrod D Rubinstein, Junjie Hao, Aviv Regev, Catherine Dulac, Xiaowei Zhuang
Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region. Science (New York, N.Y.) 362 (6416) (2018)
Guiping Wang, Jeffrey R Moffitt, Xiaowei Zhuang
Author Correction: Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy. Scientific reports 8 (1) (2018)
George Emanuel, Jeffrey R Moffitt, Xiaowei Zhuang
High-throughput, image-based screening of pooled genetic-variant libraries. Nature methods 14 (12) (2017)
Boran Han, Ruobo Zhou, Chenglong Xia, Xiaowei Zhuang
Structural organization of the actin-spectrin-based membrane skeleton in dendrites and soma of neurons. Proceedings of the National Academy of Sciences of the United States of America 114 (32) (2017)
Jean-Ju Chung, Kiyoshi Miki, Doory Kim, Sang-Hee Shim, Huanan F Shi, Jae Yeon Hwang, Xinjiang Cai, Yusuf Iseri, Xiaowei Zhuang, David E Clapham
CatSperζ regulates the structural continuity of sperm Ca2+ signaling domains and is required for normal fertility. eLife 6 (2017)
Jeffrey R Moffitt, Junjie Hao, Dhananjay Bambah-Mukku, Tian Lu, Catherine Dulac, Xiaowei Zhuang
High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing. Proceedings of the National Academy of Sciences of the United States of America 113 (50) (2016)
Jeffrey R Moffitt, Junjie Hao, Guiping Wang, Kok Hao Chen, Hazen P Babcock, Xiaowei Zhuang
High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization. Proceedings of the National Academy of Sciences of the United States of America 113 (39) (2016)
Jeffrey R Moffitt, Shristi Pandey, Alistair N Boettiger, Siyuan Wang, Xiaowei Zhuang
Spatial organization shapes the turnover of a bacterial transcriptome. eLife 5 (2016)
Jiang He, Ruobo Zhou, Zhuhao Wu, Monica A Carrasco, Peri T Kurshan, Jonathan E Farley, David J Simon, Guiping Wang, Boran Han, Junjie Hao, Evan Heller, Marc R Freeman, Kang Shen, Tom Maniatis, Marc Tessier-Lavigne, Xiaowei Zhuang
Prevalent presence of periodic actin-spectrin-based membrane skeleton in a broad range of neuronal cell types and animal species. Proceedings of the National Academy of Sciences of the United States of America 113 (21) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Xiaowei Zhuang