Wenyi Wang (W Wang)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 48

Top Venues

Genome research

Cancer research

Journal of clinical oncology : official journal of the American Society of Clinical Oncology

bioRxiv : the preprint server for biology

The University of Texas MD Anderson Cancer Center

This page only lists publications with an associated author ORCID identifier.

Affiliation History

The University of Texas MD Anderson Cancer Center Sep 01 2010

United States

Associate Professor :: Bioinformatics and Computational Biology

Publications

Ana M Aparicio, Rebecca S Slack Tidwell, Shalini Singh Yadav, Jiun-Sheng Chen, Miao Zhang, JIngjing Liu, Shuai Guo, Patrick G Pilié, Yao Yu, Xingzhi Song, Haswanth Vundavilli, Sonali Jindal, Keyi Zhu, Paul V Viscuse, Justin M Lebenthal, Andrew W Hahn, Rama Soundararajan, Paul Gettys Corn, Amado J Zurita, Sumit K Subudhi, Jianhua Zhang, Wenyi Wang, Chad D Huff, Patricia Troncoso, James P Allison, Padmanee Sharma, Christopher L Logothetis
A Modular Trial of Androgen Signaling Inhibitor Combinations Testing a Risk-Adapted Strategy in Patients with Metastatic Castration-Resistant Prostate Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Gang Peng, Jessica L Corredor, Wenwei Jiao, Jacynda Woodman-Ross, Banu K Arun, Wenyi Wang
LFSPROShiny: An Interactive R/Shiny App for Prediction and Visualization of Cancer Risks in Families With Deleterious Germline TP53 Mutations. JCO clinical cancer informatics 8 (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Jessica L Corredor, Jacynda Woodman-Ross, Sierra Green, Angelica M Gutierrez, Banu K Arun, Wenyi Wang
Validating Risk Prediction Models for Multiple Primaries and Competing Cancer Outcomes in Families With Li-Fraumeni Syndrome Using Clinically Ascertained Data. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 42 (18) (2024)
Ana M Aparicio, Rebecca S Slack Tidwell, Shalini Singh Yadav, Jiun-Sheng Chen, Miao Zhang, JIngjing Liu, Shuai Guo, Patrick G Pilié, Yao Yu, Xingzhi Song, Haswanth Vundavilli, Sonali Jindal, Keyi Zhu, Paul V Viscuse, Justin M Lebenthal, Andrew W Hahn, Rama Soundararajan, Paul Gettys Corn, Amado J Zurita, Sumit K Subudhi, Jianhua Zhang, Wenyi Wang, Chad D Huff, Patricia Troncoso, James P Allison, Padmanee Sharma, Christopher L Logothetis
A Modular Trial of Androgen Signaling Inhibitor Combinations Testing a Risk-Adapted Strategy in Patients with Metastatic Castration-Resistant Prostate Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Ana M Aparicio, Rebecca S Slack Tidwell, Shalini Singh Yadav, Jiun-Sheng Chen, Miao Zhang, JIngjing Liu, Shuai Guo, Patrick G Pilié, Yao Yu, Xingzhi Song, Haswanth Vundavilli, Sonali Jindal, Keyi Zhu, Paul V Viscuse, Justin M Lebenthal, Andrew W Hahn, Rama Soundararajan, Paul Gettys Corn, Amado J Zurita, Sumit K Subudhi, Jianhua Zhang, Wenyi Wang, Chad D Huff, Patricia Troncoso, James P Allison, Padmanee Sharma, Christopher L Logothetis
A Modular Trial of Androgen Signaling Inhibitor Combinations Testing a Risk-Adapted Strategy in Patients with Metastatic Castration-Resistant Prostate Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Ana M Aparicio, Rebecca S Slack Tidwell, Shalini Singh Yadav, Jiun-Sheng Chen, Miao Zhang, JIngjing Liu, Shuai Guo, Patrick G Pilié, Yao Yu, Xingzhi Song, Haswanth Vundavilli, Sonali Jindal, Keyi Zhu, Paul V Viscuse, Justin M Lebenthal, Andrew W Hahn, Rama Soundararajan, Paul Gettys Corn, Amado J Zurita, Sumit K Subudhi, Jianhua Zhang, Wenyi Wang, Chad D Huff, Patricia Troncoso, James P Allison, Padmanee Sharma, Christopher L Logothetis
A Modular Trial of Androgen Signaling Inhibitor Combinations Testing a Risk-Adapted Strategy in Patients with Metastatic Castration-Resistant Prostate Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (13) (2024)
Shuangxi Ji, Tong Zhu, Ankit Sethia, Wenyi Wang
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Genome research 34 (4) (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Jessica L Corredor, Jacynda Woodman-Ross, Sierra Green, Angelica M Gutierrez, Banu K Arun, Wenyi Wang
Validating Risk Prediction Models for Multiple Primaries and Competing Cancer Outcomes in Families With Li-Fraumeni Syndrome Using Clinically Ascertained Data. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 42 (18) (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Gang Peng, Jessica L Corredor, Wenwei Jiao, Jacynda Woodman-Ross, Banu K Arun, Wenyi Wang
LFSPROShiny: An Interactive R/Shiny App for Prediction and Visualization of Cancer Risks in Families With Deleterious Germline TP53 Mutations. JCO clinical cancer informatics 8 (2024)
Shuangxi Ji, Tong Zhu, Ankit Sethia, Wenyi Wang
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Genome research (2024)
Vahid Bahrambeigi, Jaewon J Lee, Vittorio Branchi, Kimal I Rajapakshe, Zhichao Xu, Naishu Kui, Jason T Henry, Wang Kun, Bret M Stephens, Sarah Dhebat, Mark W Hurd, Ryan Sun, Peng Yang, Eytan Ruppin, Wenyi Wang, Edmund S Kopetz, Anirban Maitra, Paola A Guerrero
Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-specific Transcriptome and Molecular Subtype. Cancer research (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Gang Peng, Jessica L Corredor, Wenwei Jiao, Jacynda Woodman-Ross, Banu K Arun, Wenyi Wang
LFSPROShiny: An Interactive R/Shiny App for Prediction and Visualization of Cancer Risks in Families With Deleterious Germline TP53 Mutations. JCO clinical cancer informatics 8 (2024)
Jessica L Corredor, Elissa B Dodd-Eaton, Jacynda Woodman-Ross, Ashley Woodson, Nam H Nguyen, Gang Peng, Sierra Green, Angelica M Gutierrez, Banu K Arun, Wenyi Wang
Performance of LFSPRO TP53 germline carrier risk predictions compared to standard genetic counseling practice on prospectively collected probands. medRxiv : the preprint server for health sciences (2024)
Vahid Bahrambeigi, Jaewon J Lee, Vittorio Branchi, Kimal I Rajapakshe, Zhichao Xu, Naishu Kui, Jason T Henry, Wang Kun, Bret M Stephens, Sarah Dhebat, Mark W Hurd, Ryan Sun, Peng Yang, Eytan Ruppin, Wenyi Wang, Edmund S Kopetz, Anirban Maitra, Paola A Guerrero
Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-specific Transcriptome and Molecular Subtype. Cancer research (2024)
Shuangxi Ji, Wenyi Wang, Tong Zhu, Ankit Sethia
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Genome research (2024)
Shuangxi Ji, Tong Zhu, Ankit Sethia, Wenyi Wang
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Genome research 34 (4) (2024)
Shuangxi Ji, Tong Zhu, Ankit Sethia, Wenyi Wang
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Genome research 34 (4) (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Jessica L Corredor, Jacynda Woodman-Ross, Sierra Green, Angelica M Gutierrez, Banu K Arun, Wenyi Wang
Validating Risk Prediction Models for Multiple Primaries and Competing Cancer Outcomes in Families With Li-Fraumeni Syndrome Using Clinically Ascertained Data. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 42 (18) (2024)
Vahid Bahrambeigi, Jaewon J Lee, Vittorio Branchi, Kimal I Rajapakshe, Zhichao Xu, Naishu Kui, Jason T Henry, Wang Kun, Bret M Stephens, Sarah Dhebat, Mark W Hurd, Ryan Sun, Peng Yang, Eytan Ruppin, Wenyi Wang, Edmund S Kopetz, Anirban Maitra, Paola A Guerrero
Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-Specific Transcriptome and Molecular Subtype. Cancer research 84 (10) (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Jessica L Corredor, Jacynda Woodman-Ross, Sierra Green, Angelica M Gutierrez, Banu K Arun, Wenyi Wang
Validating Risk Prediction Models for Multiple Primaries and Competing Cancer Outcomes in Families With Li-Fraumeni Syndrome Using Clinically Ascertained Data. Journal of clinical oncology : official journal of the American Society of Clinical Oncology (2024)
Shuangxi Ji, Tong Zhu, Ankit Sethia, Wenyi Wang
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Genome research (2024)
Yujie Jiang, Matthew D Montierth, Kaixian Yu, Shuangxi Ji, Shuai Guo, Quang Tran, Xiaoqian Liu, Seung Jun Shin, Shaolong Cao, Ruonan Li, Yuxin Tang, Tom Lesluyes, Edmund S Kopetz, Jaffer A Ajani, Pavlos Msaouel, Sumit K Subudhi, Ana Aparicio, Padmanee Sharma, John Paul Shen, Anil K Sood, Maxime Tarabichi, Jennifer R Wang, Marek Kimmel, Peter Van Loo, Hongtu Zhu, Wenyi Wang
Pan-cancer subclonal mutation analysis of 7,827 tumors predicts clinical outcome. bioRxiv : the preprint server for biology (2024)
Shuangxi Ji, Tong Zhu, Ankit Sethia, Wenyi Wang
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Genome research 34 (4) (2024)
Ana M Aparicio, Rebecca S Slack Tidwell, Shalini Singh Yadav, Jiun-Sheng Chen, Miao Zhang, JIngjing Liu, Shuai Guo, Patrick G Pilié, Yao Yu, Xingzhi Song, Haswanth Vundavilli, Sonali Jindal, Keyi Zhu, Paul V Viscuse, Justin M Lebenthal, Andrew W Hahn, Rama Soundararajan, Paul Gettys Corn, Amado J Zurita, Sumit K Subudhi, Jianhua Zhang, Wenyi Wang, Chad D Huff, Patricia Troncoso, James P Allison, Padmanee Sharma, Christopher L Logothetis
A Modular Trial of Androgen Signaling Inhibitor Combinations Testing a Risk-Adapted Strategy in Patients with Metastatic Castration-Resistant Prostate Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 30 (13) (2024)
Shuangxi Ji, Tong Zhu, Ankit Sethia, Wenyi Wang
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Genome research 34 (4) (2024)
Shuangxi Ji, Wenyi Wang, Tong Zhu, Ankit Sethia
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Genome research (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Gang Peng, Jessica L Corredor, Wenwei Jiao, Jacynda Woodman-Ross, Banu K Arun, Wenyi Wang
LFSPROShiny: An Interactive R/Shiny App for Prediction and Visualization of Cancer Risks in Families With Deleterious Germline TP53 Mutations. JCO clinical cancer informatics 8 (2024)
Vahid Bahrambeigi, Jaewon J Lee, Vittorio Branchi, Kimal I Rajapakshe, Zhichao Xu, Naishu Kui, Jason T Henry, Wang Kun, Bret M Stephens, Sarah Dhebat, Mark W Hurd, Ryan Sun, Peng Yang, Eytan Ruppin, Wenyi Wang, Edmund S Kopetz, Anirban Maitra, Paola A Guerrero
Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-specific Transcriptome and Molecular Subtype. Cancer research (2024)
Vahid Bahrambeigi, Jaewon J Lee, Vittorio Branchi, Kimal I Rajapakshe, Zhichao Xu, Naishu Kui, Jason T Henry, Wang Kun, Bret M Stephens, Sarah Dhebat, Mark W Hurd, Ryan Sun, Peng Yang, Eytan Ruppin, Wenyi Wang, Edmund S Kopetz, Anirban Maitra, Paola A Guerrero
Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-Specific Transcriptome and Molecular Subtype. Cancer research 84 (10) (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Jessica L Corredor, Jacynda Woodman-Ross, Sierra Green, Angelica M Gutierrez, Banu K Arun, Wenyi Wang
Validating Risk Prediction Models for Multiple Primaries and Competing Cancer Outcomes in Families With Li-Fraumeni Syndrome Using Clinically Ascertained Data. Journal of clinical oncology : official journal of the American Society of Clinical Oncology (2024)
Jennifer Rui Wang, Mark E Zafereo, Maria E Cabanillas, Chia Chin Wu, Li Xu, Yaoyi Dai, Wenyi Wang, Stephen Y Lai, Ying Henderson, Lauren Erasmus, Michelle D Williams, Corinne Joshu, Debashree Ray
The association between thyroid differentiation score and survival outcomes in papillary thyroid carcinoma. The Journal of clinical endocrinology and metabolism (2024)
Nam H Nguyen, Elissa B Dodd-Eaton, Gang Peng, Jessica L Corredor, Wenwei Jiao, Jacynda Woodman-Ross, Banu K Arun, Wenyi Wang
LFSPROShiny: An Interactive R/Shiny App for Prediction and Visualization of Cancer Risks in Families With Deleterious Germline TP53 Mutations. JCO clinical cancer informatics 8 (2024)
Vahid Bahrambeigi, Jaewon J Lee, Vittorio Branchi, Kimal I Rajapakshe, Zhichao Xu, Naishu Kui, Jason T Henry, Wang Kun, Bret M Stephens, Sarah Dhebat, Mark W Hurd, Ryan Sun, Peng Yang, Eytan Ruppin, Wenyi Wang, Edmund S Kopetz, Anirban Maitra, Paola A Guerrero
Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-Specific Transcriptome and Molecular Subtype. Cancer research 84 (10) (2024)
Caishang Zheng, Yanjun Wei, Qiang Zhang, Ming Sun, Yunfei Wang, Jiakai Hou, Peng Zhang, Xiangdong Lv, Dan Su, Yujie Jiang, Joy Gumin, Nidhi Sahni, Baoli Hu, Wenyi Wang, Xi Chen, Daniel J McGrail, Chaolin Zhang, Suyun Huang, Han Xu, Junjie Chen, Frederick F Lang, Jian Hu, Yiwen Chen
Multiomics analyses reveal DARS1-AS1 /YBX1-controlled posttranscriptional circuits promoting glioblastoma tumorigenesis/radioresistance. Science advances 9 (31) (2023)
Jennifer Rui Wang, Mark E Zafereo, Wenyi Wang, Corinne Joshu, Debashree Ray
Association of polygenic score with tumor molecular subtypes in papillary thyroid carcinoma. The Journal of clinical endocrinology and metabolism (2023)
Nam H Nguyen, Elissa B Dodd-Eaton, Jessica L Corredor, Jacynda Woodman-Ross, Sierra Green, Nathaniel D Hernandez, Angelica M Gutierrez Barrera, Banu K Arun, Wenyi Wang
Validating risk prediction models for multiple primaries and competing cancer outcomes in families with Li-Fraumeni syndrome using clinically ascertained data at a single institute. medRxiv : the preprint server for health sciences (2023)
Nam H Nguyen, Elissa B Dodd-Eaton, Gang Peng, Jessica L Corredor, Wenwei Jiao, Jacynda Woodman-Ross, Banu K Arun, Wenyi Wang
LFSPROShiny: an interactive R/Shiny app for prediction and visualization of cancer risks in families with deleterious germline TP53 mutations. medRxiv : the preprint server for health sciences (2023)
Dhruv Chachad, Lalit R Patel, Carlos Vera Recio, Rasoul Pourebrahim, Elizabeth M Whitley, Wenyi Wang, Xiaoping Su, An Xu, Dung-Fang Lee, Guillermina Lozano
Unique transcriptional profiles underlie osteosarcomagenesis driven by different p53 mutants. Cancer research (2023)
Nam H Nguyen, Seung Jun Shin, Elissa B Dodd-Eaton, Jing Ning, Wenyi Wang
Personalized Risk Prediction for Cancer Survivors: A Bayesian Semi-parametric Recurrent Event Model with Competing Outcomes. bioRxiv : the preprint server for biology (2023)
Shuai Guo, Xiaoqian Liu, Xuesen Cheng, Yujie Jiang, Shuangxi Ji, Qingnan Liang, Andrew Koval, Yumei Li, Leah A Owen, Ivana K Kim, Ana Aparicio, John Paul Shen, Scott Kopetz, John N Weinstein, Margaret M DeAngelis, Rui Chen, Wenyi Wang
The DeMixSC deconvolution framework uses single-cell sequencing plus a small benchmark dataset for improved analysis of cell-type ratios in complex tissue samples. bioRxiv : the preprint server for biology (2023)
Nam H Nguyen, Seung Jun Shin, Elissa B Dodd-Eaton, Jing Ning, Wenyi Wang
Personalized Risk Prediction for Cancer Survivors: A Bayesian Semi-parametric Recurrent Event Model with Competing Outcomes. bioRxiv : the preprint server for biology (2023)
Caishang Zheng, Yanjun Wei, Peng Zhang, Kangyu Lin, Dandan He, Hongqi Teng, Ganiraju Manyam, Zhao Zhang, Wen Liu, Hye Rin Lindsay Lee, Ximing Tang, Wei He, Nelufa Islam, Antrix Jain, Yulun Chiu, Shaolong Cao, Yarui Diao, Sherita Meyer-Gauen, Magnus Höök, Anna Malovannaya, Wenbo Li, Ming Hu, Wenyi Wang, Han Xu, Scott Kopetz, Yiwen Chen
CRISPR-Cas9-based functional interrogation of unconventional translatome reveals human cancer dependency on cryptic non-canonical open reading frames. Nature structural & molecular biology (2023)
Shuangxi Ji, Tong Zhu, Ankit Sethia, Wenyi Wang
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. bioRxiv : the preprint server for biology (2023)
Jennifer Rui Wang, Matthew D Montierth, Li Xu, Maitrayee Goswami, Xiao Zhao, Gilbert Cote, Wenyi Wang, Priyanka Iyer, Ramona Dadu, Naifa L Busaidy, Stephen Y Lai, Neil D Gross, Renata Ferrarotto, Charles Lu, Gary Brandon Gunn, Michelle D Williams, Mark J Routbort, Mark E Zafereo, Maria E Cabanillas
Impact of Somatic Mutations on Survival Outcomes in Patients With Anaplastic Thyroid Carcinoma. JCO precision oncology 6 (2022)
Shaolong Cao, Jennifer R Wang, Shuangxi Ji, Peng Yang, Yaoyi Dai, Shuai Guo, Matthew D Montierth, John Paul Shen, Xiao Zhao, Jingxiao Chen, Jaewon James Lee, Paola A Guerrero, Nicholas Spetsieris, Nikolai Engedal, Sinja Taavitsainen, Kaixian Yu, Julie Livingstone, Vinayak Bhandari, Shawna Marie Hubert, Najat C Daw, P Andrew Futreal, Eleni Efstathiou, Bora Lim, Andrea Viale, Jianjun Zhang, Matti Nykter, Bogdan A Czerniak, Powel H Brown, Charles Swanton, Pavlos Msaouel, Anirban Maitra, Edmund S Kopetz, Peter J Campbell, Terence P Speed, Paul C Boutros, Hongtu Zhu, Alfonso Urbanucci, Jonas Demeulemeester, Peter Van Loo, Wenyi Wang
Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression. Nature biotechnology 40 (11) (2022)
Sinja Taavitsainen, Nikolai Engedal, S Cao, Florian Handle, A Erickson, Stefan Prekovic, D Wetterskog, Teemu Tolonen, Elisa M Vuorinen, A Kiviaho, R Nätkin, T Häkkinen, W Devlies, S Henttinen, R Kaarijärvi, Mari Lahnalampi, Heidi Kaljunen, K Nowakowska, H Syvälä, M Bläuer, P Cremaschi, Frank Claessens, T Visakorpi, T L J Tammela, T Murtola, Kirsi J Granberg, Alastair D Lamb, K Ketola, I G Mills, Gerhardt Attard, Wenyi Wang, Matti Nykter, Alfonso Urbanucci
Single-cell ATAC and RNA sequencing reveal pre-existing and persistent cells associated with prostate cancer relapse. Nature communications 12 (1) (2021)
Jeffrey S Morris, Manal M Hassan, Ye Emma Zohner, Zeya Wang, Lianchun Xiao, Asif Rashid, Abedul Haque, Reham Abdel-Wahab, Yehia I Mohamed, Karri L Ballard, Robert A Wolff, Bhawana George, Liang Li, Genevera Allen, Michael Weylandt, Donghui Li, Wenyi Wang, Kanwal Raghav, James C Yao, Hesham M Amin, Ahmed Omar Kaseb
HepatoScore-14: Measures of Biological Heterogeneity Significantly Improve Prediction of Hepatocellular Carcinoma Risk. Hepatology (Baltimore, Md.) 73 (6) (2021)
Yu Fan, Liu Xi, Daniel S T Hughes, Jianjun Zhang, Jianhua Zhang, P Andrew Futreal, David A Wheeler, Wenyi Wang
MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data. Genome biology 17 (1) (2016)

Wenyi Wang.css-eqlu8i{font-size:small;padding-left:4px;} (W Wang)

Publication Activity (10 Years)

Top Topics

Top Venues

Wenyi Wang (W Wang)