Stephen Baker (Steve Baker)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 61

Top Topics

Escherichia Coli

Antimicrobial Resistance

Top Venues

Nature communications

Critical care (London, England)

Wellcome open research

This page only lists publications with an associated author ORCID identifier.

Publications

Quynh Nguyen, Yen Thi Phuong Nguyen, Tuyen Thanh Ha, Dung Thi Ngoc Tran, Phat Vinh Voong, Vinh Chau, Phuong Luong Nha Nguyen, Ngan Thi Quynh Le, Lan Phu Huong Nguyen, To Thi Nguyen Nguyen, Tan Van Trinh, Juan J Carrique-Mas, Stephen Baker, Guy E Thwaites, Maia A Rabaa, Marc Choisy, Hao Chung The, Duy Thanh Pham
Genomic insights unveil the plasmid transfer mechanism and epidemiology of hypervirulent Klebsiella pneumoniae in Vietnam. Nature communications 15 (1) (2024)
Quynh Nguyen, Yen Thi Phuong Nguyen, Tuyen Thanh Ha, Dung Thi Ngoc Tran, Phat Vinh Voong, Vinh Chau, Phuong Luong Nha Nguyen, Ngan Thi Quynh Le, Lan Phu Huong Nguyen, To Thi Nguyen Nguyen, Tan Van Trinh, Juan J Carrique-Mas, Stephen Baker, Guy E Thwaites, Maia A Rabaa, Marc Choisy, Hao Chung The, Duy Thanh Pham
Genomic insights unveil the plasmid transfer mechanism and epidemiology of hypervirulent Klebsiella pneumoniae in Vietnam. Nature communications 15 (1) (2024)
John Alexander Clark, Theodore Gouliouris, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Vilas Navapurkar, Stephen Baker, Nazima Pathan
Enhanced diagnosis of severe bacterial and fungal respiratory infection in children using a rapid syndromic array-case report. Translational pediatrics 13 (4) (2024)
John Alexander Clark, Theodore Gouliouris, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Vilas Navapurkar, Stephen Baker, Nazima Pathan
Enhanced diagnosis of severe bacterial and fungal respiratory infection in children using a rapid syndromic array-case report. Translational pediatrics 13 (4) (2024)
John Alexander Clark, Theodore Gouliouris, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Vilas Navapurkar, Stephen Baker, Nazima Pathan
Enhanced diagnosis of severe bacterial and fungal respiratory infection in children using a rapid syndromic array-case report. Translational pediatrics 13 (4) (2024)
Hao Chung The, Phuong Pham, Tuyen Ha Thanh, Linh Vo Kim Phuong, Nguyen Phuong Yen, Son-Nam H Le, Duong Vu Thuy, Tran Thi Hong Chau, Hoang Le Phuc, Nguyen Minh Ngoc, Lu Lan Vi, Alison E Mather, Guy E Thwaites, Nicholas R Thomson, Stephen Baker, Duy Thanh Pham
Multidrug resistance plasmids underlie clonal expansions and international spread of Salmonella enterica serotype 1,4,[5],12:i:- ST34 in Southeast Asia. Communications biology 6 (1) (2023)
Elli Mylona, Lisa Hefele, Nga Tran Vu Thieu, Tan Trinh Van, Chau Nguyen Ngoc Minh, Anh Tran Tuan, Abhilasha Karkey, Sabina Dongol, Buddha Basnyat, Phat Voong Vinh, Thanh Ho Ngoc Dan, Paula Russell, Richelle C Charles, Christopher M Parry, Stephen Baker
The identification of enteric fever-specific antigens for population based serosurveillance. The Journal of infectious diseases (2023)
John Alexander Clark, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Iain Robert Louis Kean, Vilas Navapurkar, Josefin Bartholdson Scott, Mailis Maes, Rachel Bousfield, Michelle S Toleman, David P Inwald, Zhenguang Zhang, Shruti Agrawal, Constantinos Kanaris, Fahad Khokhar, Theodore Gouliouris, Stephen Baker, Nazima Pathan
The rapid detection of respiratory pathogens in critically ill children. Critical care (London, England) 27 (1) (2023)
John Alexander Clark, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Iain Robert Louis Kean, Vilas Navapurkar, Josefin Bartholdson Scott, Mailis Maes, Rachel Bousfield, Michelle S Toleman, David P Inwald, Zhenguang Zhang, Shruti Agrawal, Constantinos Kanaris, Fahad Khokhar, Theodore Gouliouris, Stephen Baker, Nazima Pathan
The rapid detection of respiratory pathogens in critically ill children. Critical care (London, England) 27 (1) (2023)
John Alexander Clark, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Iain Robert Louis Kean, Vilas Navapurkar, Josefin Bartholdson Scott, Mailis Maes, Rachel Bousfield, Michelle S Toleman, David P Inwald, Zhenguang Zhang, Shruti Agrawal, Constantinos Kanaris, Fahad Khokhar, Theodore Gouliouris, Stephen Baker, Nazima Pathan
The rapid detection of respiratory pathogens in critically ill children. Critical care (London, England) 27 (1) (2023)
John Alexander Clark, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Iain Robert Louis Kean, Vilas Navapurkar, Josefin Bartholdson Scott, Mailis Maes, Rachel Bousfield, Michelle S Toleman, David P Inwald, Zhenguang Zhang, Shruti Agrawal, Constantinos Kanaris, Fahad Khokhar, Theodore Gouliouris, Stephen Baker, Nazima Pathan
The rapid detection of respiratory pathogens in critically ill children. Critical care (London, England) 27 (1) (2023)
John Alexander Clark, Andrew Conway Morris, Constantinos Kanaris, David P Inwald, Warwick W Butt, Joshua Osowicki, Luregn J Schlapbach, Martin D Curran, Deborah K White, Esther Daubney, Shruti Agrawal, Vilas Navapurkar, Michelle S Toleman, Stephen Baker, Nazima Pathan
A qualitative investigation of paediatric intensive care staff attitudes towards the diagnosis of lower respiratory tract infection in the molecular diagnostics era. Intensive care medicine. Paediatric and neonatal 1 (1) (2023)
John Alexander Clark, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Iain Robert Louis Kean, Vilas Navapurkar, Josefin Bartholdson Scott, Mailis Maes, Rachel Bousfield, Michelle S Toleman, David P Inwald, Zhenguang Zhang, Shruti Agrawal, Constantinos Kanaris, Fahad Khokhar, Theodore Gouliouris, Stephen Baker, Nazima Pathan
The rapid detection of respiratory pathogens in critically ill children. Critical care (London, England) 27 (1) (2023)
John Alexander Clark, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Iain Robert Louis Kean, Vilas Navapurkar, Josefin Bartholdson Scott, Mailis Maes, Rachel Bousfield, Michelle S Toleman, David P Inwald, Zhenguang Zhang, Shruti Agrawal, Constantinos Kanaris, Fahad Khokhar, Theodore Gouliouris, Stephen Baker, Nazima Pathan
The rapid detection of respiratory pathogens in critically ill children. Critical care (London, England) 27 (1) (2023)
John Alexander Clark, Andrew Conway Morris, Martin D Curran, Deborah K White, Esther Daubney, Iain Robert Louis Kean, Vilas Navapurkar, Josefin Bartholdson Scott, Mailis Maes, Rachel Bousfield, Michelle S Toleman, David P Inwald, Zhenguang Zhang, Shruti Agrawal, Constantinos Kanaris, Fahad Khokhar, Theodore Gouliouris, Stephen Baker, Nazima Pathan
The rapid detection of respiratory pathogens in critically ill children. Critical care (London, England) 27 (1) (2023)
Arif Mohammad Tanmoy, Yogesh Hooda, Mohammad S I Sajib, Kesia E da Silva, Junaid Iqbal, Farah N Qamar, Stephen P Luby, Gordon Dougan, Zoe Anne Dyson, Stephen Baker, Denise O Garrett, Jason R Andrews, Samir K Saha, Senjuti Saha
Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity. Nature communications 13 (1) (2022)
Elena Fernández Álvaro, Phat Voong Vinh, Cristina de Cozar, David R Willé, Beatriz Urones, Alvaro Cortés, Alan Price, Nhu Tran Do Hoang, Tuyen Ha Thanh, Molly McCloskey, Shareef Shaheen, Denise Dayao, Amanda Martinot, Jaime de Mercado, Pablo Castañeda, Adolfo García-Perez, Benson Singa, Patricia Pavlinac, Judd Walson, Maria Santos Martínez-Martínez, Samuel L M Arnold, Saul Tzipori, Lluis Ballell Pages, Stephen Baker
The repurposing of Tebipenem pivoxil as alternative therapy for severe gastrointestinal infections caused by extensively drug-resistant Shigella spp. eLife 11 (2022)
Arif Mohammad Tanmoy, Yogesh Hooda, Mohammad S I Sajib, Kesia E da Silva, Junaid Iqbal, Farah N Qamar, Stephen P Luby, Gordon Dougan, Zoe Anne Dyson, Stephen Baker, Denise O Garrett, Jason R Andrews, Samir K Saha, Senjuti Saha
Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity. Nature communications 13 (1) (2022)
Christopher J R Illingworth, William L Hamilton, Christopher Jackson, Ben Warne, Ashley Popay, Luke Meredith, Myra Hosmillo, Aminu Jahun, Tom Fieldman, Matthew Routledge, Charlotte J Houldcroft, Laura Caller, Sarah Caddy, Anna Yakovleva, Grant Hall, Fahad A Khokhar, Theresa Feltwell, Malte L Pinckert, Iliana Georgana, Yasmin Chaudhry, Martin Curran, Surendra Parmar, Dominic Sparkes, Lucy Rivett, Nick K Jones, Sushmita Sridhar, Sally Forrest, Tom Dymond, Kayleigh Grainger, Chris Workman, Effrossyni Gkrania-Klotsas, Nicholas M Brown, Michael P Weekes, Stephen Baker, Sharon J Peacock, Theodore Gouliouris, Ian Goodfellow, Daniela De Angelis, M Estée Török
A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events. Molecular biology and evolution 39 (3) (2022)
Elena Fernández Álvaro, Phat Voong Vinh, Cristina de Cozar, David R Willé, Beatriz Urones, Alvaro Cortés, Alan Price, Nhu Tran Do Hoang, Tuyen Ha Thanh, Molly McCloskey, Shareef Shaheen, Denise Dayao, Amanda Martinot, Jaime de Mercado, Pablo Castañeda, Adolfo García-Perez, Benson Singa, Patricia Pavlinac, Judd Walson, Maria Santos Martínez-Martínez, Samuel L M Arnold, Saul Tzipori, Lluis Ballell Pages, Stephen Baker
Correction: The repurposing of Tebipenem pivoxil as alternative therapy for severe gastrointestinal infections caused by extensively drug-resistant Shigella spp. eLife 11 (2022)
Arif Mohammad Tanmoy, Yogesh Hooda, Mohammad S I Sajib, Kesia E da Silva, Junaid Iqbal, Farah N Qamar, Stephen P Luby, Gordon Dougan, Zoe Anne Dyson, Stephen Baker, Denise O Garrett, Jason R Andrews, Samir K Saha, Senjuti Saha
Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity. Nature communications 13 (1) (2022)
Nguyen Thi Nhung, Nguyen Thi Phuong Yen, Nguyen Thi Thuy Dung, Nguyen Thi Minh Nhan, Doan Hoang Phu, Bach Tuan Kiet, Guy Thwaites, Ronald B Geskus, Stephen Baker, Juan J Carrique-Mas, Marc Choisy
Antimicrobial resistance in commensal Escherichia coli from humans and chickens in the Mekong Delta of Vietnam is driven by antimicrobial usage and potential cross-species transmission. JAC-antimicrobial resistance 4 (3) (2022)
Sulochana Manandhar, Quynh Nguyen, To Nguyen Thi Nguyen, Duy Thanh Pham, Maia A Rabaa, Sabina Dongol, Buddha Basnyat, Sameer M Dixit, Stephen Baker, Abhilasha Karkey
Genomic epidemiology, antimicrobial resistance and virulence factors of Enterobacter cloacae complex causing potential community-onset bloodstream infections in a tertiary care hospital of Nepal. JAC-antimicrobial resistance 4 (3) (2022)
Claire Waddington, Megan E Carey, Christine J Boinett, Ellen Higginson, Balaji Veeraraghavan, Stephen Baker
Exploiting genomics to mitigate the public health impact of antimicrobial resistance. Genome medicine 14 (1) (2022)
Arif Mohammad Tanmoy, Yogesh Hooda, Mohammad S I Sajib, Kesia E da Silva, Junaid Iqbal, Farah N Qamar, Stephen P Luby, Gordon Dougan, Zoe Anne Dyson, Stephen Baker, Denise O Garrett, Jason R Andrews, Samir K Saha, Senjuti Saha
Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity. Nature communications 13 (1) (2022)
Nguyen Duc Toan, Thomas C Darton, Nguyen Hoang Thien Huong, Nhat Thanh Hoang Le, To Nguyen Thi Nguyen, Ha Thanh Tuyen, Le Quoc Thinh, Nguyen Kien Mau, Pham Thi Thanh Tam, Cam Ngoc Phuong, Le Nguyen Thanh Nhan, Ngo Ngoc Quang Minh, Ngo Minh Xuan, Tang Chi Thuong, Nguyen Thanh Hung, Christine Boinett, Stephen Reece, Abhilasha Karkey, Jeremy N Day, Stephen Baker
Clinical and laboratory factors associated with neonatal sepsis mortality at a major Vietnamese children's hospital. PLOS global public health 2 (9) (2022)
Arif Mohammad Tanmoy, Yogesh Hooda, Mohammad S I Sajib, Kesia E da Silva, Junaid Iqbal, Farah N Qamar, Stephen P Luby, Gordon Dougan, Zoe Anne Dyson, Stephen Baker, Denise O Garrett, Jason R Andrews, Samir K Saha, Senjuti Saha
Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity. Nature communications 13 (1) (2022)
John Alexander Clark, Deborah K White, Esther Daubney, Martin Curran, Rachel Bousfield, Theodore Gouliouris, Elizabeth Powell, Adam Palmer, Shruti Agrawal, David P Inwald, Iain Robert Louis Kean, M Estée Török, Stephen Baker, Nazima Pathan
Low diagnostic yield and time to diagnostic confirmation results in prolonged use of antimicrobials in critically ill children. Wellcome open research 6 (2022)
Teresa Brevini, Mailis Maes, Gwilym J Webb, Binu V John, Claudia D Fuchs, Gustav Buescher, Lu Wang, Chelsea Griffiths, Marnie L Brown, William E Scott, Pehuén Pereyra-Gerber, William T H Gelson, Stephanie Brown, Scott Dillon, Daniele Muraro, Joanne Sharp, Megan Neary, Helen Box, Lee Tatham, James P Stewart, Paul Curley, Henry Pertinez, Sally Forrest, Petra Mlcochova, Sagar S Varankar, Mahnaz Darvish Damavandi, Victoria L Mulcahy, Rhoda E Kuc, Thomas L Williams, James A Heslop, Davide Rossetti, Olivia C Tysoe, Vasileios Galanakis, Marta Vila-Gonzalez, Thomas W M Crozier, Johannes Bargehr, Sanjay Sinha, Sara S Upponi, Corrina Fear, Lisa Swift, Kourosh Saeb Parsy, Susan E Davies, Axel Wester, Hannes Hagström, Espen Melum, Darran Clements, Peter Humphreys, Jo Herriott, Edyta Kijak, Helen Cox, Chloe Bramwell, Anthony Valentijn, Christopher J R Illingworth, null null, Bassam Dahman, Dustin R Bastaich, Raphaella D Ferreira, Thomas Marjot, Eleanor Barnes, Andrew M Moon, Alfred S Barritt, Ravindra Kumar Gupta, Stephen Baker, Anthony P Davenport, Gareth Corbett, Vassilis G Gorgoulis, Simon James Alexander Buczacki, Joo-Hyeon Lee, Nicholas J Matheson, Michael Trauner, Andrew J Fisher, Paul Gibbs, Andrew J Butler, Christopher J E Watson, George F Mells, Gordon Dougan, Andrew Owen, Ansgar W Lohse, Ludovic Vallier, Fotios Sampaziotis
FXR inhibition may protect from SARS-CoV-2 infection by reducing ACE2. Nature (2022)
Vu Thuy Duong, Le Thi Phuong Tu, Ha Thanh Tuyen, Le Thi Quynh Nhi, James I Campbell, Pham Van Minh, Hoang Le Phuc, Tran Thi Hong Chau, Nguyen Minh Ngoc, Lu Lan Vi, Claire Jenkins, Iruka Okeke, Ellen Higginson, Stephen Baker
Correction: Novel multiplex real-time PCR assays reveal a high prevalence of diarrhoeagenic Escherichia coli pathotypes in healthy and diarrhoeal children in the south of Vietnam. BMC microbiology 22 (1) (2022)
Abhishek Giri, Abhilasha Karkey, Sabina Dongol, Amit Arjyal, Archana Maharjan, Balaji Veeraraghavan, Buddhi Prasad Paudyal, Christiane Dolecek, Damodar Gajurel, Dung Nguyen Thi Phuong, Duy Pham Thanh, Farah Qamar, Gagandeep Kang, Ho Van Hien, Jacob John, Katrina Lawson, Marcel Wolbers, Md Shabab Hossain, M Sharifuzzaman, Nantasit Luangasanatip, Nhukesh Maharjan, Piero Olliaro, Priscilla Rupali, Ronas Shakya, Sadia Shakoor, Samita Rijal, Sonia Qureshi, Stephen Baker, Subi Joshi, Tahmeed Ahmed, Thomas C Darton, Tran Nguyen Bao, Yoel Lubell, Evelyne Kestelyn, Guy E Thwaites, Christopher M Parry, Buddha Basnyat
Azithromycin and cefixime combination versus azithromycin alone for the out-patient treatment of clinically suspected or confirmed uncomplicated typhoid fever in South Asia: a randomised controlled trial protocol. Wellcome open research 6 (2021)
Hao Chung The, Chau Nguyen Ngoc Minh, Chau Tran Thi Hong, To Nguyen Thi Nguyen, Lindsay J Pike, Caroline Zellmer, Trung Pham Duc, Tuan-Anh Tran, Tuyen Ha Thanh, Minh Pham Van, Guy E Thwaites, Maia A Rabaa, Lindsay J Hall, Stephen Baker
Exploring the Genomic Diversity and Antimicrobial Susceptibility of Bifidobacterium pseudocatenulatum in a Vietnamese Population. Microbiology spectrum 9 (2) (2021)
Joana Pereira-Dias, Chau Nguyen Ngoc Minh, Chau Tran Thi Hong, To Nguyen Thi Nguyen, Tuyen Ha Thanh, Caroline Zellmer, Hao Chung The, Lindsay Pike, Ellen E Higginson, Stephen Baker
The gut microbiome of healthy Vietnamese adults and children is a major reservoir for resistance genes against critical antimicrobials. The Journal of infectious diseases (2021)
Hao Chung The, Ladaporn Bodhidatta, Duy Thanh Pham, Carl J Mason, Tuyen Ha Thanh, Phat Voong Vinh, Paul Turner, Sopheak Hem, David A B Dance, Paul N Newton, Rattanaphone Phetsouvanh, Viengmon Davong, Guy E Thwaites, Nicholas R Thomson, Stephen Baker, Maia A Rabaa
Evolutionary histories and antimicrobial resistance in Shigella flexneri and Shigella sonnei in Southeast Asia. Communications biology 4 (1) (2021)
John Alexander Clark, Deborah K White, Esther Daubney, Martin Curran, Rachel Bousfield, Theodore Gouliouris, Elizabeth Powell, Adam Palmer, Shruti Agrawal, David P Inwald, Iain Robert Louis Kean, M Estée Török, Stephen Baker, Nazima Pathan
Low diagnostic yield and time to diagnostic confirmation results in prolonged use of antimicrobials in critically ill children. Wellcome open research 6 (2021)
Abhishek Giri, Abhilasha Karkey, Sabina Dongol, Amit Arjyal, Archana Maharjan, Balaji Veeraraghavan, Buddhi Prasad Paudyal, Christiane Dolecek, Damodar Gajurel, Dung Nguyen Thi Phuong, Duy Pham Thanh, Farah Qamar, Gagandeep Kang, Ho Van Hien, Jacob John, Katrina Lawson, Marcel Wolbers, Md Shabab Hossain, M Sharifuzzaman, Nantasit Luangasanatip, Nhukesh Maharjan, Piero Olliaro, Priscilla Rupali, Ronas Shakya, Sadia Shakoor, Samita Rijal, Sonia Qureshi, Stephen Baker, Subi Joshi, Tahmeed Ahmed, Thomas C Darton, Tran Nguyen Bao, Yoel Lubell, Evelyne Kestelyn, Guy E Thwaites, Christopher M Parry, Buddha Basnyat
Azithromycin and cefixime combination versus azithromycin alone for the out-patient treatment of clinically suspected or confirmed uncomplicated typhoid fever in South Asia: a randomised controlled trial protocol. Wellcome open research 6 (2021)
Jane Hawkey, Kalani Paranagama, Kate S Baker, Rebecca J Bengtsson, François-Xavier Weill, Nicholas R Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J Ingle, Timothy J Dallman, Claire Jenkins, Deborah Ann Williamson, Kathryn E Holt
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei. Nature communications 12 (1) (2021)
Robert C Will, Thandavarayan Ramamurthy, Naresh Chand Sharma, Balaji Veeraraghavan, Lucky Sangal, Pradeep Haldar, Agila Kumari Pragasam, Karthick Vasudevan, Dhirendra Kumar, Bhabatosh Das, Eva Heinz, Vyacheslav G Melnikov, Stephen Baker, Vartul Sangal, Gordon Dougan, Ankur Mutreja
Spatiotemporal persistence of multiple, diverse clades and toxins of Corynebacterium diphtheriae. Nature communications 12 (1) (2021)
Ruklanthi de Alwis, Li Liang, Omid Taghavian, Emma Werner, Hao Chung The, Trang Nguyen Hoang Thu, Vu Thuy Duong, D Huw Davies, Philip L Felgner, Stephen Baker
The identification of novel immunogenic antigens as potential Shigella vaccine components. Genome medicine 13 (1) (2021)
Lauren A Cowley, Mokibul Hassan Afrad, Sadia Isfat Ara Rahman, Md Mahfuz Al Mamun, Taylor Chin, Ayesha Mahmud, Mohammed Ziaur Rahman, Mallick Masum Billah, Manjur Hossain Khan, Sharmin Sultana, Tilovatul Khondaker, Stephen Baker, Nandita Banik, Ahmed Nawsher Alam, Kaiissar Mannoor, Sayera Banu, Anir Chowdhury, Meerjady Sabrina Flora, Nicholas R Thomson, Caroline O Buckee, Firdausi Qadri, Tahmina Shirin
Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh. Nature microbiology 6 (10) (2021)
Sushmita Sridhar, Sally Forrest, Ben Warne, Mailis Maes, Stephen Baker, Gordon Dougan, Josefin Bartholdson Scott
High-Content Imaging to Phenotype Antimicrobial Effects on Individual Bacteria at Scale. mSystems 6 (3) (2021)
Lisa Hefele, Antony P Black, Trinh Van Tan, Nguyen Tri Minh, Hoang Duc Nguyen, Siriphone Virachith, Claude P Muller, Judith M Hübschen, Paula Russell, Josefin Bartholdson Scott, Chau Nguyen Ngoc Minh, Tran Vu Thieu Nga, Stephen Baker
An age-stratified serosurvey against purified Salmonella enterica serovar Typhi antigens in the Lao People´s Democratic Republic. PLoS neglected tropical diseases 15 (12) (2021)
Christopher J R Illingworth, William L Hamilton, Ben Warne, Matthew Routledge, Ashley Popay, Chris Jackson, Tom Fieldman, Luke W Meredith, Charlotte J Houldcroft, Myra Hosmillo, Aminu S Jahun, Laura G Caller, Sarah L Caddy, Anna Yakovleva, Grant Hall, Fahad A Khokhar, Theresa Feltwell, Malte L Pinckert, Iliana Georgana, Yasmin Chaudhry, Martin D Curran, Surendra Parmar, Dominic Sparkes, Lucy Rivett, Nick K Jones, Sushmita Sridhar, Sally Forrest, Tom Dymond, Kayleigh Grainger, Chris Workman, Mark Ferris, Effrossyni Gkrania-Klotsas, Nicholas M Brown, Michael P Weekes, Stephen Baker, Sharon J Peacock, Ian G Goodfellow, Theodore Gouliouris, Daniela de Angelis, Michelle S Toleman
Superspreaders drive the largest outbreaks of hospital onset COVID-19 infections. eLife 10 (2021)
Nguyen Thi Nhung, Nguyen Thi Phuong Yen, Nguyen Van Ky Thien, Nguyen Van Cuong, Bach Tuan Kiet, James Campbell, Guy Thwaites, Stephen Baker, Ronald B Geskus, Juan Carrique-Mas
A novel method for measuring phenotypic colistin resistance in Escherichia coli populations from chicken flocks. Applied and environmental microbiology (2020)
Kelly L Wyres, To N T Nguyen, Margaret M C Lam, Louise M Judd, Nguyen van Vinh Chau, David A B Dance, Margaret Ip, Abhilasha Karkey, Clare L Ling, Thyl Miliya, Paul N Newton, Nguyen Phu Huong Lan, Amphone Sengduangphachanh, Paul Turner, Balaji Veeraraghavan, Phat Voong Vinh, Manivanh Vongsouvath, Nicholas R Thomson, Stephen Baker, Kathryn E Holt
Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia. Genome medicine 12 (1) (2020)
Sushmita Sridhar, Sally Forrest, Iain Robert Louis Kean, Jamie Young, Josefin Bartholdson Scott, Mailis Maes, Joana Pereira-Dias, Surendra Parmar, Matthew Routledge, Dominic Sparkes, Lucy Rivett, Gordon Dougan, Michael Weekes, Martin Curran, Ian G Goodfellow, Stephen Baker
A blueprint for the implementation of a validated approach for the detection of SARS-Cov2 in clinical samples in academic facilities. Wellcome open research 5 (2020)
Pham Thanh Duy, To Nguyen Thi Nguyen, Duong Vu Thuy, Hao Chung The, Felicity Alcock, Christine Boinett, Ho Ngoc Dan Thanh, Ha Thanh Tuyen, Guy E Thwaites, Maia A Rabaa, Stephen Baker
Commensal Escherichia coli are a reservoir for the transfer of XDR plasmids into epidemic fluoroquinolone-resistant Shigella sonnei. Nature microbiology 5 (2) (2020)
Duy Thanh Pham, Nga Tran Vu Thieu, To Nguyen Thi Nguyen, Ho Ngoc Dan Thanh, Sabina Dongol, Abhilasha Karkey, Megan E Carey, Buddha Basnyat, Gordon Dougan, Maia A Rabaa, Stephen Baker
Gallbladder carriage generates genetic variation and genome degradation in Salmonella Typhi. PLoS pathogens 16 (10) (2020)
Andrea Parisi, Tu Le Thi Phuong, Alison E Mather, Thibaut Jombart, Ha Thanh Tuyen, Nguyen Phu Huong Lan, Nguyen Hoang Thu Trang, Juan Carrique-Mas, James I Campbell, Kathryn Glass, Martyn D Kirk, Stephen Baker
Differential antimicrobial susceptibility profiles between symptomatic and asymptomatic non-typhoidal Salmonella infections in Vietnamese children. Epidemiology and infection 148 (2020)
Vu Thuy Duong, Hao Chung The, Tran Do Hoang Nhu, Ha Thanh Tuyen, James I Campbell, Pham Van Minh, Hoang Le Phuc, Tran Thi Hong Chau, Nguyen Minh Ngoc, Lu Lan Vi, Alison E Mather, Stephen Baker
Genomic Serotyping, Clinical Manifestations, and Antimicrobial Resistance of Nontyphoidal Salmonella Gastroenteritis in Hospitalized Children in Ho Chi Minh City, Vietnam. Journal of clinical microbiology 58 (12) (2020)
Paula Lucia Diaz Guevara, Lucy Angeline Montaño, Carolina Duarte, Gabriela Zabaleta, Mailis Maes, Julio Cesar Martinez Angarita, Duy Pham Thanh, William León-Quevedo, Carlos Castañeda-Orjuela, Claudia Jimena Alvarez Alvarez, Jaime Guerrero, Miriam Moroni, Josefina Campos, Enrique Pérez, Stephen Baker
Surveillance of Salmonella enterica serovar Typhi in Colombia, 2012-2015. PLoS neglected tropical diseases 14 (3) (2020)
Vu Thuy Duong, Le Thi Phuong Tu, Ha Thanh Tuyen, Le Thi Quynh Nhi, James I Campbell, Pham Van Minh, Hoang Le Phuc, Tran Thi Hong Chau, Nguyen Minh Ngoc, Lu Lan Vi, Claire Jenkins, Iruka Okeke, Ellen Higginson, Stephen Baker
Novel multiplex real-time PCR assays reveal a high prevalence of diarrhoeagenic Escherichia coli pathotypes in healthy and diarrhoeal children in the south of Vietnam. BMC microbiology 20 (1) (2020)
Sushmita Sridhar, Sally Forrest, Iain Robert Louis Kean, Jamie Young, Josefin Bartholdson Scott, Mailis Maes, Joana Pereira-Dias, Surendra Parmar, Matthew Routledge, Dominic Sparkes, Lucy Rivett, Gordon Dougan, Michael Weekes, Martin Curran, Ian G Goodfellow, Stephen Baker
A blueprint for the implementation of a validated approach for the detection of SARS-Cov2 in clinical samples in academic facilities. Wellcome open research (2020)
Thomas Crellen, Paul Turner, Sreymom Pol, Stephen Baker, To Nguyen Thi Nguyen, Nicole Stoesser, Nicholas Pj Day, Claudia Turner, Ben S Cooper
Transmission dynamics and control of multidrug-resistant Klebsiella pneumoniae in neonates in a developing country. eLife 8 (2019)
Mark E J Woolhouse, Jordan Ashworth, Carlijn Bogaardt, Ngo Tri Tue, Stephen Baker, Guy Thwaites, Tran My Phuc
Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam. Scientific data 6 (1) (2019)
Hao Chung The, Christine Boinett, Duy Pham Thanh, Claire Jenkins, François-Xavier Weill, Benjamin Peter Howden, Mary Valcanis, Niall De Lappe, Martin Cormican, Sonam Wangchuk, Ladaporn Bodhidatta, Carl J Mason, To Nguyen Thi Nguyen, Tuyen Ha Thanh, Vinh Phat Voong, Vu Thuy Duong, Phu Huong Lan Nguyen, Paul Turner, Ryan R Wick, Pieter-Jan Ceyssens, Guy Thwaites, Kathryn E Holt, Nicholas R Thomson, Maia A Rabaa, Stephen Baker
Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. Nature communications 10 (1) (2019)
Nguyen Thi Kha Tu, Ngo Tri Tue, Olli Vapalahti, Anna-Maija K Virtala, Le Van Tan, Maia A Rabaa, Juan Carrique-Mas, Guy E Thwaites, Stephen Baker, null null
Occupational Animal Contact in Southern and Central Vietnam. EcoHealth 16 (4) (2019)
Ruchita Balasubramanian, Justin Im, Jung-Seok Lee, Hyon Jin Jeon, Ondari D Mogeni, Jerome H Kim, Raphaël Rakotozandrindrainy, Stephen Baker, Florian Marks
The global burden and epidemiology of invasive non-typhoidal Salmonella infections. Human vaccines & immunotherapeutics 15 (6) (2018)
Elin Näsström, Pär Jonsson, Anders Johansson, Sabina Dongol, Abhilasha Karkey, Buddha Basnyat, Nga Tran Vu Thieu, Tan Trinh Van, Guy E Thwaites, Henrik Antti, Stephen Baker
Diagnostic metabolite biomarkers of chronic typhoid carriage. PLoS neglected tropical diseases 12 (1) (2018)
Stephen Baker, Nicholas R Thomson, François-Xavier Weill, Kathryn E Holt
Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens. Science (New York, N.Y.) 360 (6390) (2018)
Elin Näsström, Christopher M Parry, Nga Tran Vu Thieu, Rapeephan R Maude, Hanna K de Jong, Masako Fukushima, Olena Rzhepishevska, Florian Marks, Ursula Panzner, Justin Im, Hyonjin Jeon, Seeun Park, Zabeen Chaudhury, Aniruddha Ghose, Rasheda Samad, Tan Trinh Van, Anders Johansson, Arjen M Dondorp, Guy E Thwaites, Abul Faiz, Henrik Antti, Stephen Baker
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