Nima Aghaeepour

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 55

Top Topics

Acute Myeloid Leukemia

Machine Learning

Top Venues

Nature communications

Nature computational science

Nature biotechnology

Development (Cambridge, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Alice S Tang, Katherine P Rankin, Gabriel Cerono, Silvia Miramontes, Hunter Mills, Jacquelyn Roger, Billy Zeng, Charlotte Nelson, Karthik Soman, Sarah R Woldemariam, Yaqiao Li, Albert Lee, Riley M Bove, Maria Glymour, Nima Aghaeepour, Tomiko T Oskotsky, Zachary Miller, Isabel E Allen, Stephan J Sanders, Sergio E Baranzini, Marina Sirota
Leveraging electronic health records and knowledge networks for Alzheimer's disease prediction and sex-specific biological insights. Nature aging 4 (3) (2024)
Lichy Han, Danton S Char, Nima Aghaeepour, null null
Artificial Intelligence in Perioperative Care: Opportunities and Challenges. Anesthesiology 141 (2) (2024)
Julien Hédou, Ivana Marié, Grégoire Bellan, Jakob Einhaus, Dyani K Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina Annelies Stelzer, Dorien Feyaerts, Amy S Tsai, Edward A Ganio, Maximilian Sabayev, Joshua Gillard, Jonas Amar, Amelie Cambriel, Tomiko T Oskotsky, Alennie Roldan, Jonathan L Golob, Marina Sirota, Thomas A Bonham, Masaki Sato, Maïgane Diop, Xavier Durand, Martin S Angst, David K Stevenson, Nima Aghaeepour, Andrea Montanari, Brice L Gaudilliere
Discovery of sparse, reliable omic biomarkers with Stabl. Nature biotechnology (2024)
Alice S Tang, Katherine P Rankin, Gabriel Cerono, Silvia Miramontes, Hunter Mills, Jacquelyn Roger, Billy Zeng, Charlotte Nelson, Karthik Soman, Sarah R Woldemariam, Yaqiao Li, Albert Lee, Riley M Bove, Maria Glymour, Nima Aghaeepour, Tomiko T Oskotsky, Zachary Miller, Isabel E Allen, Stephan J Sanders, Sergio E Baranzini, Marina Sirota
Leveraging electronic health records and knowledge networks for Alzheimer's disease prediction and sex-specific biological insights. Nature aging (2024)
Alice S Tang, Katherine P Rankin, Gabriel Cerono, Silvia Miramontes, Hunter Mills, Jacquelyn Roger, Billy Zeng, Charlotte Nelson, Karthik Soman, Sarah R Woldemariam, Yaqiao Li, Albert Lee, Riley M Bove, Maria Glymour, Nima Aghaeepour, Tomiko T Oskotsky, Zachary Miller, Isabel E Allen, Stephan J Sanders, Sergio E Baranzini, Marina Sirota
Leveraging electronic health records and knowledge networks for Alzheimer's disease prediction and sex-specific biological insights. Nature aging 4 (3) (2024)
Alice S Tang, Katherine P Rankin, Gabriel Cerono, Silvia Miramontes, Hunter Mills, Jacquelyn Roger, Billy Zeng, Charlotte Nelson, Karthik Soman, Sarah R Woldemariam, Yaqiao Li, Albert Lee, Riley M Bove, Maria Glymour, Nima Aghaeepour, Tomiko T Oskotsky, Zachary Miller, Isabel E Allen, Stephan J Sanders, Sergio E Baranzini, Marina Sirota
Leveraging electronic health records and knowledge networks for Alzheimer's disease prediction and sex-specific biological insights. Nature aging 4 (3) (2024)
Julien Hédou, Ivana Marié, Grégoire Bellan, Jakob Einhaus, Dyani K Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina Annelies Stelzer, Dorien Feyaerts, Amy S Tsai, Edward A Ganio, Maximilian Sabayev, Joshua Gillard, Jonas Amar, Amelie Cambriel, Tomiko T Oskotsky, Alennie Roldan, Jonathan L Golob, Marina Sirota, Thomas A Bonham, Masaki Sato, Maïgane Diop, Xavier Durand, Martin S Angst, David K Stevenson, Nima Aghaeepour, Andrea Montanari, Brice L Gaudilliere
Discovery of sparse, reliable omic biomarkers with Stabl. Nature biotechnology (2024)
Julien Hédou, Ivana Marié, Grégoire Bellan, Jakob Einhaus, Dyani K Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina Annelies Stelzer, Dorien Feyaerts, Amy S Tsai, Edward A Ganio, Maximilian Sabayev, Joshua Gillard, Jonas Amar, Amelie Cambriel, Tomiko T Oskotsky, Alennie Roldan, Jonathan L Golob, Marina Sirota, Thomas A Bonham, Masaki Sato, Maïgane Diop, Xavier Durand, Martin S Angst, David K Stevenson, Nima Aghaeepour, Andrea Montanari, Brice L Gaudilliere
Discovery of sparse, reliable omic biomarkers with Stabl. Nature biotechnology (2024)
Julien Hédou, Ivana Marié, Grégoire Bellan, Jakob Einhaus, Dyani K Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina Annelies Stelzer, Dorien Feyaerts, Amy S Tsai, Edward A Ganio, Maximilian Sabayev, Joshua Gillard, Jonas Amar, Amelie Cambriel, Tomiko T Oskotsky, Alennie Roldan, Jonathan L Golob, Marina Sirota, Thomas A Bonham, Masaki Sato, Maïgane Diop, Xavier Durand, Martin S Angst, David K Stevenson, Nima Aghaeepour, Andrea Montanari, Brice L Gaudilliere
Discovery of sparse, reliable omic biomarkers with Stabl. Nature biotechnology (2024)
Lichy Han, Danton S Char, Nima Aghaeepour, null null
Artificial Intelligence in Perioperative Care: Opportunities and Challenges. Anesthesiology 141 (2) (2024)
Lichy Han, Danton S Char, Nima Aghaeepour, null null
Artificial Intelligence in Perioperative Care: Opportunities and Challenges. Anesthesiology 141 (2) (2024)
Julien Hédou, Ivana Marié, Grégoire Bellan, Jakob Einhaus, Dyani K Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina Annelies Stelzer, Dorien Feyaerts, Amy S Tsai, Edward A Ganio, Maximilian Sabayev, Joshua Gillard, Jonas Amar, Amelie Cambriel, Tomiko T Oskotsky, Alennie Roldan, Jonathan L Golob, Marina Sirota, Thomas A Bonham, Masaki Sato, Maïgane Diop, Xavier Durand, Martin S Angst, David K Stevenson, Nima Aghaeepour, Andrea Montanari, Brice L Gaudilliere
Discovery of sparse, reliable omic biomarkers with Stabl. Nature biotechnology (2024)
Alice S Tang, Katherine P Rankin, Gabriel Cerono, Silvia Miramontes, Hunter Mills, Jacquelyn Roger, Billy Zeng, Charlotte Nelson, Karthik Soman, Sarah R Woldemariam, Yaqiao Li, Albert Lee, Riley M Bove, Maria Glymour, Nima Aghaeepour, Tomiko T Oskotsky, Zachary Miller, Isabel E Allen, Stephan J Sanders, Sergio E Baranzini, Marina Sirota
Leveraging electronic health records and knowledge networks for Alzheimer's disease prediction and sex-specific biological insights. Nature aging 4 (3) (2024)
Julien Hédou, Ivana Marié, Grégoire Bellan, Jakob Einhaus, Dyani K Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina Annelies Stelzer, Dorien Feyaerts, Amy S Tsai, Edward A Ganio, Maximilian Sabayev, Joshua Gillard, Jonas Amar, Amelie Cambriel, Tomiko T Oskotsky, Alennie Roldan, Jonathan L Golob, Marina Sirota, Thomas A Bonham, Masaki Sato, Maïgane Diop, Xavier Durand, Martin S Angst, David K Stevenson, Nima Aghaeepour, Andrea Montanari, Brice L Gaudilliere
Discovery of sparse, reliable omic biomarkers with Stabl. Nature biotechnology (2024)
Martin Becker, Huda Nassar, Camilo A Espinosa, Ina A Stelzer, Dorien Feyaerts, Eloise Berson, Neda H Bidoki, Alan L Chang, Geetha Saarunya, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Marić, Samson J Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha, Neal G Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary Shaw, David Stevenson, Martin S Angst, Brice Gaudilliere, Nima Aghaeepour
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nature computational science 3 (4) (2023)
Martin Becker, Huda Nassar, Camilo A Espinosa, Ina A Stelzer, Dorien Feyaerts, Eloise Berson, Neda H Bidoki, Alan L Chang, Geetha Saarunya, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Marić, Samson J Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha, Neal G Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary Shaw, David Stevenson, Martin S Angst, Brice Gaudilliere, Nima Aghaeepour
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nature computational science 3 (4) (2023)
Eloise Berson, Anjali Sreenivas, Thanaphong Phongpreecha, Amalia Perna, Fiorella C Grandi, Lei Xue, Neal G Ravindra, Neelufar Payrovnaziri, Samson J Mataraso, Yeasul Kim, Camilo A Espinosa, Alan L Chang, Martin Becker, Kathleen S Montine, Edward J Fox, Howard Y Chang, M Ryan Corces, Nima Aghaeepour, Thomas J Montine
Whole genome deconvolution unveils Alzheimer's resilient epigenetic signature. Nature communications 14 (1) (2023)
Julien Hedou, Ivana Marié, Grégoire Bellan, Jakob Einhaus, Dyani K Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina Annelies Stelzer, Dorien Feyaerts, Amy S Tsai, Edward Ganio, Maximilian Sabayev, Joshua Gillard, Adam Bonham, Masaki Sato, Maïgane Diop, Martin S Angst, David Stevenson, Nima Aghaeepour, Andrea Montanari, Brice L Gaudilliere
Stabl: sparse and reliable biomarker discovery in predictive modeling of high-dimensional omic data. Research square (2023)
Martin Becker, Huda Nassar, Camilo A Espinosa, Ina A Stelzer, Dorien Feyaerts, Eloise Berson, Neda H Bidoki, Alan L Chang, Geetha Saarunya, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Marić, Samson J Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha, Neal G Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary Shaw, David Stevenson, Martin S Angst, Brice Gaudilliere, Nima Aghaeepour
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nature computational science 3 (4) (2023)
Julien Hedou, Ivana Marié, Grégoire Bellan, Jakob Einhaus, Dyani K Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina Annelies Stelzer, Dorien Feyaerts, Amy S Tsai, Edward Ganio, Maximilian Sabayev, Joshua Gillard, Adam Bonham, Masaki Sato, Maïgane Diop, Martin S Angst, David Stevenson, Nima Aghaeepour, Andrea Montanari, Brice L Gaudilliere
Stabl: sparse and reliable biomarker discovery in predictive modeling of high-dimensional omic data. Research square (2023)
Benedicte Sjo Tislevoll, Monica Hellesøy, Oda Helen Eck Fagerholt, Stein-Erik Gullaksen, Aashish Srivastava, Even Birkeland, Dimitrios Kleftogiannis, Pilar Ayuda-Durán, Laure Piechaczyk, Dagim Shiferaw Tadele, Jørn Skavland, Panagiotis Baliakas, Randi Hovland, Vibeke Andresen, Ole Morten Seternes, Tor Henrik Anderson Tvedt, Nima Aghaeepour, Sonia Gavasso, Kimmo Porkka, Inge Jonassen, Yngvar Fløisand, Jorrit M Enserink, Nello Blaser, Bjorn Tore Gjertsen
Early response evaluation by single cell signaling profiling in acute myeloid leukemia. Nature communications 14 (1) (2023)
Davide De Francesco, Jonathan D Reiss, Jacquelyn Roger, Alice S Tang, Alan L Chang, Martin Becker, Thanaphong Phongpreecha, Camilo A Espinosa, Susanna Morin, Eloise Berson, Melan Thuraiappah, Brian L Le, Neal G Ravindra, Seyedeh Neelufar Payrovnaziri, Samson J Mataraso, Yeasul Kim, Lei Xue, Melissa G Rosenstein, Tomiko T Oskotsky, Ivana Marié, Brice L Gaudilliere, Brendan Carvalho, Brian T Bateman, Martin S Angst, Lawrence S Prince, Yair J Blumenfeld, William E Benitz, Janene H Fuerch, Gary M Shaw, Karl G Sylvester, David K Stevenson, Marina Sirota, Nima Aghaeepour
Data-driven longitudinal characterization of neonatal health and morbidity. Science translational medicine 15 (683) (2023)
Martin Becker, Huda Nassar, Camilo A Espinosa, Ina A Stelzer, Dorien Feyaerts, Eloise Berson, Neda H Bidoki, Alan L Chang, Geetha Saarunya, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Marić, Samson J Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha, Neal G Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary Shaw, David Stevenson, Martin S Angst, Brice Gaudilliere, Nima Aghaeepour
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nature computational science 3 (4) (2023)
Alyssa M McCoy, Omar Lakhdari, Sayane Shome, Kaitlin Caoili, Gilberto E Hernandez, Nima Aghaeepour, Lindsay D Butcher, Kathleen M Fisch, Lawrence S Prince
Sp3 is essential for normal lung morphogenesis and cell cycle progression during mouse embryonic development. Development (Cambridge, England) 150 (5) (2023)
Julien Hedou, Ivana Marié, Grégoire Bellan, Jakob Einhaus, Dyani K Gaudillière, Francois-Xavier Ladant, Franck Verdonk, Ina Annelies Stelzer, Dorien Feyaerts, Amy S Tsai, Edward Ganio, Maximilian Sabayev, Joshua Gillard, Adam Bonham, Masaki Sato, Maïgane Diop, Martin S Angst, David Stevenson, Nima Aghaeepour, Andrea Montanari, Brice L Gaudilliere
Stabl: sparse and reliable biomarker discovery in predictive modeling of high-dimensional omic data. Research square (2023)
Benedicte Sjo Tislevoll, Monica Hellesøy, Oda Helen Eck Fagerholt, Stein-Erik Gullaksen, Aashish Srivastava, Even Birkeland, Dimitrios Kleftogiannis, Pilar Ayuda-Durán, Laure Piechaczyk, Dagim Shiferaw Tadele, Jørn Skavland, Panagiotis Baliakas, Randi Hovland, Vibeke Andresen, Ole Morten Seternes, Tor Henrik Anderson Tvedt, Nima Aghaeepour, Sonia Gavasso, Kimmo Porkka, Inge Jonassen, Yngvar Fløisand, Jorrit M Enserink, Nello Blaser, Bjorn Tore Gjertsen
Author Correction: Early response evaluation by single cell signaling profiling in acute myeloid leukemia. Nature communications 14 (1) (2023)
Martin Becker, Huda Nassar, Camilo A Espinosa, Ina A Stelzer, Dorien Feyaerts, Eloise Berson, Neda H Bidoki, Alan L Chang, Geetha Saarunya, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Marić, Samson J Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha, Neal G Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary Shaw, David Stevenson, Martin S Angst, Brice Gaudilliere, Nima Aghaeepour
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nature computational science 3 (4) (2023)
Alyssa M McCoy, Omar Lakhdari, Sayane Shome, Kaitlin Caoili, Gilberto E Hernandez, Nima Aghaeepour, Lindsay D Butcher, Kathleen M Fisch, Lawrence S Prince
Sp3 is essential for normal lung morphogenesis and cell cycle progression during mouse embryonic development. Development (Cambridge, England) (2023)
Davide De Francesco, Jonathan D Reiss, Jacquelyn Roger, Alice S Tang, Alan L Chang, Martin Becker, Thanaphong Phongpreecha, Camilo A Espinosa, Susanna Morin, Eloise Berson, Melan Thuraiappah, Brian L Le, Neal G Ravindra, Seyedeh Neelufar Payrovnaziri, Samson J Mataraso, Yeasul Kim, Lei Xue, Melissa G Rosenstein, Tomiko T Oskotsky, Ivana Marié, Brice L Gaudilliere, Brendan Carvalho, Brian T Bateman, Martin S Angst, Lawrence S Prince, Yair J Blumenfeld, William E Benitz, Janene H Fuerch, Gary M Shaw, Karl G Sylvester, David K Stevenson, Marina Sirota, Nima Aghaeepour
Data-driven longitudinal characterization of neonatal health and morbidity. Science translational medicine 15 (683) (2023)
Benedicte Sjo Tislevoll, Monica Hellesøy, Oda Helen Eck Fagerholt, Stein-Erik Gullaksen, Aashish Srivastava, Even Birkeland, Dimitrios Kleftogiannis, Pilar Ayuda-Durán, Laure Piechaczyk, Dagim Shiferaw Tadele, Jørn Skavland, Panagiotis Baliakas, Randi Hovland, Vibeke Andresen, Ole Morten Seternes, Tor Henrik Anderson Tvedt, Nima Aghaeepour, Sonia Gavasso, Kimmo Porkka, Inge Jonassen, Yngvar Fløisand, Jorrit M Enserink, Nello Blaser, Bjorn Tore Gjertsen
Early response evaluation by single cell signaling profiling in acute myeloid leukemia. Nature communications 14 (1) (2023)
Clara Calvert, Meredith Merilee Brockway, Helga Zoega, Jessica Eden Miller, Jasper V Been, Adeladza Kofi Amegah, Amy Racine-Poon, Solmaz Eradat Oskoui, Ishaya I Abok, Nima Aghaeepour, Christie D Akwaowo, Belal N Alshaikh, Adejumoke Idowu Ayede, Fabiana Bacchini, Behzad Barekatain, Rodrigo Barnes, Karolina Bebak, Anick Berard, Zulfiqar A Bhutta, Jeffrey R Brook, Lenroy R Bryan, Kim Nail Cajachagua-Torres, Marsha Campbell-Yeo, Dinh-Toi Chu, Kristin L Connor, Luc Cornette, Sandra Cortés, Mandy Daly, Christian Debauche, Iyabode Olabisi F Dedeke, Kristjana Einarsdóttir, Hilde Marie Engjom, Guadalupe Estrada Gutierrez, Fantasia I, Nicole M Fiorentino, Meredith Franklin, Abigail Fraser, Onesmus W Gachuno, Linda A Gallo, Mika Gissler, Siri E Håberg, Abbas Habibelahi, Jonas Häggström, Lauren Hookham, Lisa Hui, Luis Huicho, Karen J Hunter, Sayeeda Huq, Ashish Kc, Seilesh Kadambari, Roya Kelishadi, Narjes Khalili, Joanna Kippen, Kirsty Le Doare, Javier Llorca, Laura Ann Magee, Maria C Magnus, Kenneth Keng Cheung Man, Patrick Mwirigi Mburugu, Rishi P Mediratta, Andrew D Morris, Nazeem Muhajarine, Rachel H Mulholland, Livia Nagy Bonnard, Victoria Nakibuuka, Natasha Nassar, Sylvester Dodzi Nyadanu, Laura L Oakley, Adesina Oladokun, Oladapo O Olayemi, Olanike Abosede Olutekunbi, Olubanke Rosena Oluwafemi, Taofik O Ogunkunle, Chris Orton, Anne K Örtqvist, Joseph Ouma, Oyejoke Oyapero, Kirsten Rebecca Palmer, Lars Henning Petersen, Gavin Pereira, Isabel Pereyra-González, Roy K Philip, Dominik Pruski, Marcin Przybylski, Hugo G Quezada-Pinedo, Annette K Regan, Natasha R Rhoda, Tonia A Rihs, Taylor Riley, Thiago Augusto Hernandes Rocha, Daniel Lorber Rolnik, Christoph Saner, Francisco J Schneuer, Vivienne L Souter, Olof Stephansson, Shengzhi Sun, Emma M Swift, Miklós Szabó, Marleen Temermam, Lloyd Tooke, Marcelo L Urquia, Peter Von Dadelszen, Gregory A Wellenius, Clare Whitehead, Ian Chi Kei Ck Wong, Rachael Wood, Katarzyna Wroblewska-Seniuk, Kojo Yeboah-Antwi, Christopher S Yilgwan, Agnieszka Zawiejska, Aziz Sheikh, Natalie Rodriguez, David P Burgner, Sarah Jane Stock, Meghan B Azad
Changes in preterm birth and stillbirth during COVID-19 lockdowns in 26 countries. Nature human behaviour (2023)
Davide De Francesco, Jonathan D Reiss, Jacquelyn Roger, Alice S Tang, Alan L Chang, Martin Becker, Thanaphong Phongpreecha, Camilo A Espinosa, Susanna Morin, Eloise Berson, Melan Thuraiappah, Brian L Le, Neal G Ravindra, Seyedeh Neelufar Payrovnaziri, Samson J Mataraso, Yeasul Kim, Lei Xue, Melissa G Rosenstein, Tomiko T Oskotsky, Ivana Marié, Brice L Gaudilliere, Brendan Carvalho, Brian T Bateman, Martin S Angst, Lawrence S Prince, Yair J Blumenfeld, William E Benitz, Janene H Fuerch, Gary M Shaw, Karl G Sylvester, David K Stevenson, Marina Sirota, Nima Aghaeepour
Data-driven longitudinal characterization of neonatal health and morbidity. Science translational medicine 15 (683) (2023)
Benedicte Sjo Tislevoll, Monica Hellesøy, Oda Helen Eck Fagerholt, Stein-Erik Gullaksen, Aashish Srivastava, Even Birkeland, Dimitrios Kleftogiannis, Pilar Ayuda-Durán, Laure Piechaczyk, Dagim Shiferaw Tadele, Jørn Skavland, Panagiotis Baliakas, Randi Hovland, Vibeke Andresen, Ole Morten Seternes, Tor Henrik Anderson Tvedt, Nima Aghaeepour, Sonia Gavasso, Kimmo Porkka, Inge Jonassen, Yngvar Fløisand, Jorrit M Enserink, Nello Blaser, Bjorn Tore Gjertsen
Author Correction: Early response evaluation by single cell signaling profiling in acute myeloid leukemia. Nature communications 14 (1) (2023)
Martin Becker, Huda Nassar, Camilo A Espinosa, Ina A Stelzer, Dorien Feyaerts, Eloise Berson, Neda H Bidoki, Alan L Chang, Geetha Saarunya, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Marić, Samson J Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha, Neal G Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary Shaw, David Stevenson, Martin S Angst, Brice Gaudilliere, Nima Aghaeepour
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nature computational science 3 (4) (2023)
Alyssa M McCoy, Omar Lakhdari, Sayane Shome, Kaitlin Caoili, Gilberto E Hernandez, Nima Aghaeepour, Lindsay D Butcher, Kathleen M Fisch, Lawrence S Prince
Sp3 is essential for normal lung morphogenesis and cell cycle progression during mouse embryonic development. Development (Cambridge, England) 150 (5) (2023)
Davide De Francesco, Jonathan D Reiss, Jacquelyn Roger, Alice S Tang, Alan L Chang, Martin Becker, Thanaphong Phongpreecha, Camilo A Espinosa, Susanna Morin, Eloise Berson, Melan Thuraiappah, Brian L Le, Neal G Ravindra, Seyedeh Neelufar Payrovnaziri, Samson J Mataraso, Yeasul Kim, Lei Xue, Melissa G Rosenstein, Tomiko T Oskotsky, Ivana Marié, Brice L Gaudilliere, Brendan Carvalho, Brian T Bateman, Martin S Angst, Lawrence S Prince, Yair J Blumenfeld, William E Benitz, Janene H Fuerch, Gary M Shaw, Karl G Sylvester, David K Stevenson, Marina Sirota, Nima Aghaeepour
Data-driven longitudinal characterization of neonatal health and morbidity. Science translational medicine 15 (683) (2023)
Neal G Ravindra, Camilo A Espinosa, Eloise Berson, Thanaphong Phongpreecha, Peinan Zhao, Martin Becker, Alan L Chang, Sayane Shome, Ivana Marié, Davide De Francesco, Samson Mataraso, Geetha Saarunya, Melan Thuraiappah, Lei Xue, Brice L Gaudilliere, Martin S Angst, Gary M Shaw, Erik D Herzog, David K Stevenson, Sarah K England, Nima Aghaeepour
Deep representation learning identifies associations between physical activity and sleep patterns during pregnancy and prematurity. NPJ digital medicine 6 (1) (2023)
Martin Becker, Huda Nassar, Camilo A Espinosa, Ina A Stelzer, Dorien Feyaerts, Eloise Berson, Neda H Bidoki, Alan L Chang, Geetha Saarunya, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Marić, Samson J Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha, Neal G Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary Shaw, David Stevenson, Martin S Angst, Brice Gaudilliere, Nima Aghaeepour
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nature computational science 3 (4) (2023)
Benedicte Sjo Tislevoll, Monica Hellesøy, Oda Helen Eck Fagerholt, Stein-Erik Gullaksen, Aashish Srivastava, Even Birkeland, Dimitrios Kleftogiannis, Pilar Ayuda-Durán, Laure Piechaczyk, Dagim Shiferaw Tadele, Jørn Skavland, Panagiotis Baliakas, Randi Hovland, Vibeke Andresen, Ole Morten Seternes, Tor Henrik Anderson Tvedt, Nima Aghaeepour, Sonia Gavasso, Kimmo Porkka, Inge Jonassen, Yngvar Fløisand, Jorrit M Enserink, Nello Blaser, Bjorn Tore Gjertsen
Early response evaluation by single cell signaling profiling in acute myeloid leukemia. Nature communications 14 (1) (2023)
Alyssa M McCoy, Omar Lakhdari, Sayane Shome, Kaitlin Caoili, Gilberto E Hernandez, Nima Aghaeepour, Lindsay D Butcher, Kathleen M Fisch, Lawrence S Prince
Sp3 is essential for normal lung morphogenesis and cell cycle progression during mouse embryonic development. Development (Cambridge, England) 150 (5) (2023)
Clara Calvert, Meredith Merilee Brockway, Helga Zoega, Jessica Eden Miller, Jasper V Been, Adeladza Kofi Amegah, Amy Racine-Poon, Solmaz Eradat Oskoui, Ishaya I Abok, Nima Aghaeepour, Christie D Akwaowo, Belal N Alshaikh, Adejumoke Idowu Ayede, Fabiana Bacchini, Behzad Barekatain, Rodrigo Barnes, Karolina Bebak, Anick Berard, Zulfiqar A Bhutta, Jeffrey R Brook, Lenroy R Bryan, Kim Nail Cajachagua-Torres, Marsha Campbell-Yeo, Dinh-Toi Chu, Kristin L Connor, Luc Cornette, Sandra Cortés, Mandy Daly, Christian Debauche, Iyabode Olabisi F Dedeke, Kristjana Einarsdóttir, Hilde Marie Engjom, Guadalupe Estrada Gutierrez, Fantasia I, Nicole M Fiorentino, Meredith Franklin, Abigail Fraser, Onesmus W Gachuno, Linda A Gallo, Mika Gissler, Siri E Håberg, Abbas Habibelahi, Jonas Häggström, Lauren Hookham, Lisa Hui, Luis Huicho, Karen J Hunter, Sayeeda Huq, Ashish Kc, Seilesh Kadambari, Roya Kelishadi, Narjes Khalili, Joanna Kippen, Kirsty Le Doare, Javier Llorca, Laura Ann Magee, Maria C Magnus, Kenneth Keng Cheung Man, Patrick Mwirigi Mburugu, Rishi P Mediratta, Andrew D Morris, Nazeem Muhajarine, Rachel H Mulholland, Livia Nagy Bonnard, Victoria Nakibuuka, Natasha Nassar, Sylvester Dodzi Nyadanu, Laura L Oakley, Adesina Oladokun, Oladapo O Olayemi, Olanike Abosede Olutekunbi, Olubanke Rosena Oluwafemi, Taofik O Ogunkunle, Chris Orton, Anne K Örtqvist, Joseph Ouma, Oyejoke Oyapero, Kirsten Rebecca Palmer, Lars Henning Petersen, Gavin Pereira, Isabel Pereyra-González, Roy K Philip, Dominik Pruski, Marcin Przybylski, Hugo G Quezada-Pinedo, Annette K Regan, Natasha R Rhoda, Tonia A Rihs, Taylor Riley, Thiago Augusto Hernandes Rocha, Daniel Lorber Rolnik, Christoph Saner, Francisco J Schneuer, Vivienne L Souter, Olof Stephansson, Shengzhi Sun, Emma M Swift, Miklós Szabó, Marleen Temermam, Lloyd Tooke, Marcelo L Urquia, Peter Von Dadelszen, Gregory A Wellenius, Clare Whitehead, Ian Chi Kei Ck Wong, Rachael Wood, Katarzyna Wroblewska-Seniuk, Kojo Yeboah-Antwi, Christopher S Yilgwan, Agnieszka Zawiejska, Aziz Sheikh, Natalie Rodriguez, David P Burgner, Sarah Jane Stock, Meghan B Azad
Changes in preterm birth and stillbirth during COVID-19 lockdowns in 26 countries. Nature human behaviour (2023)
Alyssa M McCoy, Omar Lakhdari, Sayane Shome, Kaitlin Caoili, Gilberto E Hernandez, Nima Aghaeepour, Lindsay D Butcher, Kathleen M Fisch, Lawrence S Prince
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Early response evaluation by single cell signaling profiling in acute myeloid leukemia. Nature communications 14 (1) (2023)
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Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries. Science advances 9 (21) (2023)
Alyssa M McCoy, Omar Lakhdari, Sayane Shome, Kaitlin Caoili, Gilberto E Hernandez, Nima Aghaeepour, Lindsay D Butcher, Kathleen M Fisch, Lawrence S Prince
Sp3 is essential for normal lung morphogenesis and cell cycle progression during mouse embryonic development. Development (Cambridge, England) 150 (5) (2023)
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Early response evaluation by single cell signaling profiling in acute myeloid leukemia. Nature communications 14 (1) (2023)
Ramin Fallahzadeh, Neda H Bidoki, Ina A Stelzer, Martin Becker, Ivana Marić, Alan L Chang, Anthony Culos, Thanaphong Phongpreecha, Maria Xenochristou, Davide De Francesco, Camilo Espinosa, Eloise Berson, Franck Verdonk, Martin S Angst, Brice Gaudilliere, Nima Aghaeepour
In-silico generation of high-dimensional immune response data in patients using a deep neural network. Cytometry. Part A : the journal of the International Society for Analytical Cytology (2022)
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Single-synapse analyses of Alzheimer's disease implicate pathologic tau, DJ1, CD47, and ApoE. Science advances 7 (51) (2021)
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Integrated trajectories of the maternal metabolome, proteome, and immunome predict labor onset. Science translational medicine 13 (592) (2021)
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Single-cell peripheral immunoprofiling of Alzheimer's and Parkinson's diseases. Science advances 6 (48) (2020)
Edward A Ganio, Natalie Stanley, Viktoria Lindberg-Larsen, Jakob Einhaus, Amy S Tsai, Franck Verdonk, Anthony Culos, Sajjad Ghaemi, Kristen K Rumer, Ina Annelies Stelzer, Dyani Gaudilliere, Eileen Tsai, Ramin Fallahzadeh, Benjamin Choisy, Henrik Kehlet, Nima Aghaeepour, Martin S Angst, Brice L Gaudilliere
Author Correction: Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma. Nature communications 11 (1) (2020)
Edward A Ganio, Natalie Stanley, Viktoria Lindberg-Larsen, Jakob Einhaus, Amy S Tsai, Franck Verdonk, Anthony Culos, Sajjad Ghaemi, Kristen K Rumer, Ina Annelies Stelzer, Dyani Gaudilliere, Eileen Tsai, Ramin Fallahzadeh, Benjamin Choisy, Henrik Kehlet, Nima Aghaeepour, Martin S Angst, Brice L Gaudilliere
Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma. Nature communications 11 (1) (2020)
Natalie Stanley, Ina Annelies Stelzer, Amy S Tsai, Ramin Fallahzadeh, Edward Ganio, Martin Becker, Thanaphong Phongpreecha, Huda Nassar, Sajjad Ghaemi, Ivana Maric, Anthony Culos, Alan L Chang, Maria Xenochristou, Xiaoyuan Han, Camilo Espinosa, Kristen Rumer, Laura Peterson, Franck Verdonk, Dyani Gaudilliere, Eileen Tsai, Dorien Feyaerts, Jakob Einhaus, Kazuo Ando, Ronald J Wong, Gerlinde Obermoser, Gary M Shaw, David K Stevenson, Martin S Angst, Brice L Gaudilliere, Nima Aghaeepour
VoPo leverages cellular heterogeneity for predictive modeling of single-cell data. Nature communications 11 (1) (2020)
Anthony Culos, Amy S Tsai, Natalie Stanley, Martin Becker, Mohammad S Ghaemi, David R McIlwain, Ramin Fallahzadeh, Athena Tanada, Huda Nassar, Camilo Espinosa, Maria Xenochristou, Edward Ganio, Laura Peterson, Xiaoyuan Han, Ina Annelies Stelzer, Kazuo Ando, Dyani K Gaudillière, Thanaphong Phongpreecha, Ivana Marié, Alan L Chang, Gary M Shaw, David K Stevenson, Sean C Bendall, Kara L Davis, Wendy Fantl, Garry P Nolan, Trevor Hastie, Robert Tibshirani, Martin S Angst, Brice L Gaudilliere, Nima Aghaeepour
Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions. Nature machine intelligence 2 (10) (2020)