Ola Spjuth

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 49

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Journal of cheminformatics

Molecular biology of the cell

Uppsala Universitet Farmaceutiska fakulteten

Uppsala Universitet Farmaceutiska fakulteten (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Uppsala Universitet Farmaceutiska fakulteten Jun 01 2016

Sweden

Senior Lecturer :: Department if Pharmaceutical Biosciences

Education History

Uppsala Universitet Farmaceutiska fakulteten Jun 01 2004 - Dec 10 2009

Sweden

PHD :: Pharmaceutical Biosciences

Publications

Srijit Seal, Maria-Anna Trapotsi, Ola Spjuth, Shantanu Singh, Jordi Carreras-Puigvert, Nigel Greene, Andreas Bender, Anne E Carpenter
A Decade in a Systematic Review: The Evolution and Impact of Cell Painting. bioRxiv : the preprint server for biology (2024)
Srijit Seal, Dominic P Williams, Layla Hosseini-Gerami, Manas Mahale, Anne E Carpenter, Ola Spjuth, Andreas Bender
Improved Detection of Drug-Induced Liver Injury by Integrating Predicted in vivo and in vitro Data. bioRxiv : the preprint server for biology (2024)
Srijit Seal, Jordi Carreras-Puigvert, Shantanu Singh, Anne E Carpenter, Ola Spjuth, Andreas Bender
From pixels to phenotypes: Integrating image-based profiling with cell health data as BioMorph features improves interpretability. Molecular biology of the cell 35 (3) (2024)
Srijit Seal, Dominic P Williams, Layla Hosseini-Gerami, Manas Mahale, Anne E Carpenter, Ola Spjuth, Andreas Bender
Improved Detection of Drug-Induced Liver Injury by Integrating Predicted in vivo and in vitro Data. bioRxiv : the preprint server for biology (2024)
Srijit Seal, Jordi Carreras-Puigvert, Shantanu Singh, Anne E Carpenter, Ola Spjuth, Andreas Bender
From pixels to phenotypes: Integrating image-based profiling with cell health data as BioMorph features improves interpretability. Molecular biology of the cell 35 (3) (2024)
Srijit Seal, Dominic P Williams, Layla Hosseini-Gerami, Manas Mahale, Anne E Carpenter, Ola Spjuth, Andreas Bender
Improved Detection of Drug-Induced Liver Injury by Integrating Predicted in vivo and in vitro Data. bioRxiv : the preprint server for biology (2024)
Srijit Seal, Maria-Anna Trapotsi, Ola Spjuth, Shantanu Singh, Jordi Carreras-Puigvert, Nigel Greene, Andreas Bender, Anne E Carpenter
A Decade in a Systematic Review: The Evolution and Impact of Cell Painting. bioRxiv : the preprint server for biology (2024)
Srijit Seal, Jordi Carreras-Puigvert, Shantanu Singh, Anne E Carpenter, Ola Spjuth, Andreas Bender
From pixels to phenotypes: Integrating image-based profiling with cell health data as BioMorph features improves interpretability. Molecular biology of the cell 35 (3) (2024)
Srijit Seal, Maria-Anna Trapotsi, Ola Spjuth, Shantanu Singh, Jordi Carreras-Puigvert, Nigel Greene, Andreas Bender, Anne E Carpenter
A Decade in a Systematic Review: The Evolution and Impact of Cell Painting. bioRxiv : the preprint server for biology (2024)
Srijit Seal, Jordi Carreras-Puigvert, Shantanu Singh, Anne E Carpenter, Ola Spjuth, Andreas Bender
From pixels to phenotypes: Integrating image-based profiling with cell health data as BioMorph features improves interpretability. Molecular biology of the cell 35 (3) (2024)
Srijit Seal, Jordi Carreras-Puigvert, Shantanu Singh, Anne E Carpenter, Ola Spjuth, Andreas Bender
From pixels to phenotypes: Integrating image-based profiling with cell health data as BioMorph features improves interpretability. Molecular biology of the cell 35 (3) (2024)
Srijit Seal, Maria-Anna Trapotsi, Ola Spjuth, Shantanu Singh, Jordi Carreras-Puigvert, Nigel Greene, Andreas Bender, Anne E Carpenter
A Decade in a Systematic Review: The Evolution and Impact of Cell Painting. bioRxiv : the preprint server for biology (2024)
Srijit Seal, Dominic P Williams, Layla Hosseini-Gerami, Manas Mahale, Anne E Carpenter, Ola Spjuth, Andreas Bender
Improved Detection of Drug-Induced Liver Injury by Integrating Predicted in vivo and in vitro Data. bioRxiv : the preprint server for biology (2024)
Srijit Seal, Dominic P Williams, Layla Hosseini-Gerami, Manas Mahale, Anne E Carpenter, Ola Spjuth, Andreas Bender
Improved Detection of Drug-Induced Liver Injury by Integrating Predicted in vivo and in vitro Data. bioRxiv : the preprint server for biology (2024)
Doroteya Raykova, Despoina Kermpatsou, Tony Malmqvist, Philip J Harrison, Marie Rubin Sander, Christiane Stiller, Johan Heldin, Mattias Leino, Sara Ricardo, Anna H Klemm, Leonor David, Ola Spjuth, Kalyani Vemuri, Anna Dimberg, Anders Sundqvist, Maria Norlin, Axel Klaesson, Caroline Kampf, Ola Söderberg
Author Correction: A method for Boolean analysis of protein interactions at a molecular level. Nature communications 14 (1) (2023)
Srijit Seal, Ola Spjuth, Layla Hosseini-Gerami, Miguel García-Ortegón, Shantanu Singh, Andreas Bender, Anne E Carpenter
Insights into Drug Cardiotoxicity from Biological and Chemical Data: The First Public Classifiers for FDA DICTrank. bioRxiv : the preprint server for biology (2023)
Marvin Martens, Rob Stierum, Emma L Schymanski, Chris T A Evelo, Reza Aalizadeh, Hristo Aladjov, Katarzyna Arturi, Karine Audouze, Pavel Babica, Karel Berka, Jos Bessems, Ludek Blaha, Evan E Bolton, Montserrat Cases, Dimitrios E Damalas, Kirtan Dave, Marco Dilger, Thomas Exner, Daan P Geerke, Roland Grafström, Alasdair Gray, John M Hancock, Henner Hollert, Nina Jeliazkova, Danyel G J Jennen, Fabien Jourdan, Pascal Kahlem, Jana Klanova, Jos Kleinjans, Todor Kondic, Boï Kone, Iseult Lynch, Uko Maran, Sergio Martinez Cuesta, Hervé Ménager, Steffen Neumann, Penny Nymark, Herbert Oberacher, Noelia Ramirez, Sylvie Remy, Philippe Rocca-Serra, Reza M Salek, Brett Sallach, Susanna-Assunta Sansone, Ferran Sanz, Haralambos Sarimveis, Sirarat Sarntivijai, Tobias Schulze, Jaroslav Slobodnik, Ola Spjuth, Jonathan Tedds, Nikolaos Thomaidis, Ralf J M Weber, Gerard van Westen, Craig E Wheelock, Antony J Williams, Hilda Witters, Barbara Zdrazil, Anze Zupanic, Egon L Wilighagen
ELIXIR and Toxicology: a community in development. F1000Research 10 (2023)
Philip John Harrison, Ankit Gupta, Jonne Rietdijk, Håkan Wieslander, Jordi Carreras-Puigvert, Polina Georgiev, Carolina Wählby, Ola Spjuth, Ida-Maria Sintorn
Evaluating the utility of brightfield image data for mechanism of action prediction. PLoS computational biology 19 (7) (2023)
Wesley Schaal, Adam Ameur, Ulla Olsson-Strömberg, Monica Hermanson, Lucia Cavelier, Ola Spjuth
Migrating to Long-Read Sequencing for Clinical Routine BCR-ABL1 TKI Resistance Mutation Screening. Cancer informatics 21 (2022)
Akshai P Sreenivasan, Philip J Harrison, Wesley Schaal, Damian J Matuszewski, Kim Kultima, Ola Spjuth
Predicting protein network topology clusters from chemical structure using deep learning. Journal of cheminformatics 14 (1) (2022)
Henrik Olsson, Kimmo Kartasalo, Nita Mulliqi, Marco Capuccini, Pekka Ruusuvuori, Hemamali Samaratunga, Brett Delahunt, Cecilia Lindskog, Emiel A M Janssen, Anders Blilie, null null, Lars Egevad, Ola Spjuth, Martin Eklund
Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction. Nature communications 13 (1) (2022)
Urban Fagerholm, Sven Hellberg, Jonathan Alvarsson, Ola Spjuth
In silico predictions of the human pharmacokinetics/toxicokinetics of 65 chemicals from various classes using conformal prediction methodology. Xenobiotica; the fate of foreign compounds in biological systems 52 (2) (2022)
Doroteya Raykova, Despoina Kermpatsou, Tony Malmqvist, Philip J Harrison, Marie Rubin Sander, Christiane Stiller, Johan Heldin, Mattias Leino, Sara Ricardo, Anna H Klemm, Leonor David, Ola Spjuth, Kalyani Vemuri, Anna Dimberg, Anders Sundqvist, Maria Norlin, Axel Klaesson, Caroline Kampf, Ola Söderberg
A method for Boolean analysis of protein interactions at a molecular level. Nature communications 13 (1) (2022)
Nathan C Sheffield, Vivien R Bonazzi, Philip E Bourne, Tony Burdett, Timothy W Clark, Robert L Grossman, Ola Spjuth, Andrew D Yates
From biomedical cloud platforms to microservices: next steps in FAIR data and analysis. Scientific data 9 (1) (2022)
Henrik Olsson, Kimmo Kartasalo, Nita Mulliqi, Marco Capuccini, Pekka Ruusuvuori, Hemamali Samaratunga, Brett Delahunt, Cecilia Lindskog, Emiel A M Janssen, Anders Blilie, null null, Lars Egevad, Ola Spjuth, Martin Eklund
Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction. Nature communications 13 (1) (2022)
Henrik Olsson, Kimmo Kartasalo, Nita Mulliqi, Marco Capuccini, Pekka Ruusuvuori, Hemamali Samaratunga, Brett Delahunt, Cecilia Lindskog, Emiel A M Janssen, Anders Blilie, null null, Lars Egevad, Ola Spjuth, Martin Eklund
Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction. Nature communications 13 (1) (2022)
Henrik Olsson, Kimmo Kartasalo, Nita Mulliqi, Marco Capuccini, Pekka Ruusuvuori, Hemamali Samaratunga, Brett Delahunt, Cecilia Lindskog, Emiel A M Janssen, Anders Blilie, null null, Lars Egevad, Ola Spjuth, Martin Eklund
Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction. Nature communications 13 (1) (2022)
Srijit Seal, Jordi Carreras-Puigvert, Maria-Anna Trapotsi, Hongbin Yang, Ola Spjuth, Andreas Bender
Integrating cell morphology with gene expression and chemical structure to aid mitochondrial toxicity detection. Communications biology 5 (1) (2022)
Henrik Olsson, Kimmo Kartasalo, Nita Mulliqi, Marco Capuccini, Pekka Ruusuvuori, Hemamali Samaratunga, Brett Delahunt, Cecilia Lindskog, Emiel A M Janssen, Anders Blilie, null null, Lars Egevad, Ola Spjuth, Martin Eklund
Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction. Nature communications 13 (1) (2022)
Ola Spjuth, Jens Frid, Andreas Hellander
The machine learning life cycle and the cloud: implications for drug discovery. Expert opinion on drug discovery 16 (9) (2021)
Urban Fagerholm, Ola Spjuth, Sven Hellberg
Comparison between lab variability and in silico prediction errors for the unbound fraction of drugs in human plasma. Xenobiotica; the fate of foreign compounds in biological systems 51 (10) (2021)
Urban Fagerholm, Sven Hellberg, Ola Spjuth
Advances in Predictions of Oral Bioavailability of Candidate Drugs in Man with New Machine Learning Methodology. Molecules (Basel, Switzerland) 26 (9) (2021)
Staffan Arvidsson McShane, Ernst Ahlberg, Tobias Noeske, Ola Spjuth
Machine Learning Strategies When Transitioning between Biological Assays. Journal of chemical information and modeling 61 (7) (2021)
Nina Lukashina, Michael J Williams, Elena Kartysheva, Elizaveta Virko, Błażej Kudłak, Robert Fredriksson, Ola Spjuth, Helgi B Schiöth
Integrating Statistical and Machine-Learning Approach for Meta-Analysis of Bisphenol A-Exposure Datasets Reveals Effects on Mouse Gene Expression within Pathways of Apoptosis and Cell Survival. International journal of molecular sciences 22 (19) (2021)
Ulf Norinder, Ola Spjuth, Fredrik Svensson
Synergy conformal prediction applied to large-scale bioactivity datasets and in federated learning. Journal of cheminformatics 13 (1) (2021)
Urban Fagerholm, Sven Hellberg, Jonathan Alvarsson, Staffan Arvidsson McShane, Ola Spjuth
In silico prediction of volume of distribution of drugs in man using conformal prediction performs on par with animal data-based models. Xenobiotica; the fate of foreign compounds in biological systems (2021)
Philip John Harrison, Håkan Wieslander, Alan Sabirsh, Johan Karlsson, Victor Malmsjö, Andreas Hellander, Carolina Wählby, Ola Spjuth
Deep-learning models for lipid nanoparticle-based drug delivery. Nanomedicine (London, England) 16 (13) (2021)
Ulf Norinder, Ola Spjuth, Fredrik Svensson
Using Predicted Bioactivity Profiles to Improve Predictive Modeling. Journal of chemical information and modeling 60 (6) (2020)
Ulf Norinder, Ola Spjuth, Fredrik Svensson
Correction to "Using Predicted Bioactivity Profiles to Improve Predictive Modeling". Journal of chemical information and modeling 60 (12) (2020)
Stephanie Herman, Torbjörn Åkerfeldt, Ola Spjuth, Joachim Burman, Kim Kultima
Biochemical Differences in Cerebrospinal Fluid between Secondary Progressive and Relapsing⁻Remitting Multiple Sclerosis. Cells 8 (2) (2019)
Fredrik Svensson, Natalia Aniceto, Ulf Norinder, Isidro Cortes-Ciriano, Ola Spjuth, Lars Carlsson, Andreas Bender
Conformal Regression for Quantitative Structure-Activity Relationship Modeling-Quantifying Prediction Uncertainty. Journal of chemical information and modeling 58 (5) (2018)
Anindya Gupta, Philip John Harrison, Håkan Wieslander, Nicolas Pielawski, Kimmo Kartasalo, Gabriele Partel, Leslie Evelyn Solórzano Vargas, Amit Suveer, Anna H Klemm, Ola Spjuth, Ida-Maria Sintorn, Carolina Wählby
Deep Learning in Image Cytometry: A Review. Cytometry. Part A : the journal of the International Society for Analytical Cytology 95 (4) (2018)
Merlijn van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez, Warwick B Dunn, Timothy M D Ebbels, Franck Giacomoni, Alejandra N Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Jose L Izquierdo-Garcia, Rafael C Jimenez, Fabien Jourdan, Namrata Kale, Maria I Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Pablo Moreno, Nicholas K Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M Salek, Susanna-Assunta Sansone, Venkata Satagopam, Daniel Schober, Ruth Shimmo, Rachel A Spicer, Ola Spjuth, Etienne A Thévenot, Mark R Viant, Ralf J M Weber, Egon L Wilighagen, Gianluigi Zanetti, Christoph Steinbeck
The future of metabolomics in ELIXIR. F1000Research 6 (2017)
Egon L Wilighagen, John W Mayfield, Jonathan Alvarsson, Arvid Berg, Lars Carlsson, Nina Jeliazkova, Stefan Kuhn, Tomáš Pluskal, Miquel Rojas-Chertó, Ola Spjuth, Gilleain Torrance, Chris T A Evelo, Rajarashi Guha, Christoph Steinbeck
Erratum to: The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. Journal of cheminformatics 9 (1) (2017)
Egon L Wilighagen, John W Mayfield, Jonathan Alvarsson, Arvid Berg, Lars Carlsson, Nina Jeliazkova, Stefan Kuhn, Tomáš Pluskal, Miquel Rojas-Chertó, Ola Spjuth, Gilleain Torrance, Chris T A Evelo, Rajarashi Guha, Christoph Steinbeck
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. Journal of cheminformatics 9 (1) (2017)
Merlijn van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez, Warwick B Dunn, Timothy M D Ebbels, Franck Giacomoni, Alejandra N Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Jose L Izquierdo-Garcia, Rafael C Jimenez, Fabien Jourdan, Namrata Kale, Maria I Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Pablo Moreno, Nicholas K Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M Salek, Susanna-Assunta Sansone, Venkata Satagopam, Daniel Schober, Ruth Shimmo, Rachel A Spicer, Ola Spjuth, Etienne A Thévenot, Mark R Viant, Ralf J M Weber, Egon L Wilighagen, Gianluigi Zanetti, Christoph Steinbeck
The future of metabolomics in ELIXIR. F1000Research (2017)
Jonathan Alvarsson, Samuel Lampa, Wesley Schaal, Claes Andersson, Jarl E S Wikberg, Ola Spjuth
Large-scale ligand-based predictive modelling using support vector machines. Journal of cheminformatics 8 (2016)
Ola Spjuth, Patrik Rydberg, Egon L Willighagen, Chris T Evelo, Nina Jeliazkova
XMetDB: an open access database for xenobiotic metabolism. Journal of cheminformatics 8 (2016)
Samuel Lampa, Jonathan Alvarsson, Ola Spjuth
Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles. Journal of cheminformatics 8 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ola Spjuth