Carolina Wählby

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 17

Top Venues

Cytometry. Part A : the journal of the International Society for Analytical Cytology

PLoS computational biology

PloS one

The Journal of pathology

Uppsala Universitet

Uppsala Universitet (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Uppsala Universitet Apr 01 2014

Sweden

professor :: Dept. Information Technology

Broad Institute May 01 2009 - Jan 01 2015

United States

PI :: Imging Platfrom

Uppsala Universitet Aug 01 2011 - Mar 31 2014

Sweden

Associate Professor, lecturer :: Dept. Information Technology

Education History

Uppsala Universitet

Sweden

PHD :: Informatioion Technology

Publications

Nikki Bialy, Frank Alber, Brenda J Andrews, Michael Angelo, Brian J Beliveau, Lacramioara Bintu, Alistair Nicol Boettiger, Ulrike Boehm, Claire M Brown, Mahmoud Bukar Maina, James J Chambers, Beth A Cimini, Kevin W Eliceiri, Rachel Errington, Orestis Faklaris, Nathalie Gaudreault, Ronald N Germain, Wojtek J Goscinski, David Grünwald, Michael Halter, Dorit Hanein, John W Hickey, Judith Lacoste, Alex Laude, Emma Lundberg, Jian Ma, Leonel Malacrida, Josh Moore, Glyn Nelson, Elizabeth Kathleen Neumann, Roland Nitschke, Shuichi Onami, Jaime A Pimentel, Anne L Plant, Andrea J Radtke, Bikash Sabata, Denis Schapiro, Johannes Schöneberg, Jeffrey M Spraggins, Damir Sudar, Wouter-Michiel Vierdag, Niels Volkmann, Carolina Wählby, Siyuan Steven Wang, Ziv Rafael Yaniv, Caterina Strambio-De-Castilla
Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data. ArXiv (2024)
Axel Andersson, Maria Escriva Conde, Olga Surova, Peter B Vermeulen, Carolina Wählby, Mats Nilsson, Hanna Nyström
Spatial transcriptome mapping of the desmoplastic growth pattern of colorectal liver metastases by in situ sequencing reveals a biologically relevant zonation of the desmoplastic rim. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Axel Andersson, Andrea Behanova, Christophe Avenel, Jonas Windhager, Filip Malmberg, Carolina Wählby
Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data. Cytometry. Part A : the journal of the International Society for Analytical Cytology (2024)
Erik Hallström, Vinodh Kandavalli, Petter Ranefall, Johan Elf, Carolina Wählby
Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy. PLoS computational biology 19 (11) (2023)
Olle Pontén, Linhong Xiao, Jeanne Kutter, Yuan Cui, Carolina Wählby, Lars Behrendt
PACMan: A software package for automated single-cell chlorophyll fluorometry. Cytometry. Part A : the journal of the International Society for Analytical Cytology (2023)
Sergio Marco Salas, Xiao Yuan, Christer Sylven, Mats Nilsson, Carolina Wählby, Gabriele Partel
De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks. PLoS computational biology 18 (8) (2022)
Tove Bekkhus, Christophe Avenel, Sabella Hanna, Mathias Franzén Boger, Anna H Klemm, Daniel Vasiliu Bacovia, Fredrik Wärnberg, Carolina Wählby, Maria H Ulvmar
Automated detection of vascular remodeling in tumor-draining lymph nodes by the deep-learning tool HEV-finder. The Journal of pathology 258 (1) (2022)
Wenfan Ke, Jordan N Reed, Chenyu Yang, Noel Higgason, Leila Rayyan, Carolina Wählby, Anne E Carpenter, Mete Civelek, Eyleen J O'Rourke
Genes in human obesity loci are causal obesity genes in C. elegans. PLoS genetics 17 (9) (2021)
Håkan Wieslander, Carolina Wählby, Ida-Maria Sintorn
TEM image restoration from fast image streams. PloS one 16 (2) (2021)
Eduard Chelebian, Christophe Avenel, Kimmo Kartasalo, Maja Marklund, Anna Tanoglidi, Tuomas K Mirtti, Richard Colling, Andrew M Erickson, Alastair D Lamb, Joakim Lundeberg, Carolina Wählby
Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer. Cancers 13 (19) (2021)
Leslie Evelyn Solórzano Vargas, Lina Wik Leiss, Thomas Olsson Bontell, Yuyu Wang, Anna H Klemm, Johan Öfverstedt, Asgeir Store Jakola, Arne Östman, Carolina Wählby
Machine learning for cell classification and neighborhood analysis in glioma tissue. Cytometry. Part A : the journal of the International Society for Analytical Cytology 99 (12) (2021)
Philip John Harrison, Håkan Wieslander, Alan Sabirsh, Johan Karlsson, Victor Malmsjö, Andreas Hellander, Carolina Wählby, Ola Spjuth
Deep-learning models for lipid nanoparticle-based drug delivery. Nanomedicine (London, England) 16 (13) (2021)
Gabriele Partel, Carolina Wählby
Spage2vec: Unsupervised representation of localized spatial gene expression signatures. The FEBS journal 288 (6) (2020)
Nicolas Pielawski, Carolina Wählby
Introducing Hann windows for reducing edge-effects in patch-based image segmentation. PloS one 15 (3) (2020)
Carolina Wählby
The quest for multiplexed spatially resolved transcriptional profiling. Nature methods 13 (8) (2018)
Anindya Gupta, Philip John Harrison, Håkan Wieslander, Nicolas Pielawski, Kimmo Kartasalo, Gabriele Partel, Leslie Evelyn Solórzano Vargas, Amit Suveer, Anna H Klemm, Ola Spjuth, Ida-Maria Sintorn, Carolina Wählby
Deep Learning in Image Cytometry: A Review. Cytometry. Part A : the journal of the International Society for Analytical Cytology 95 (4) (2018)
Sajith Kecheril Sadanandan, Petter Ranefall, Sylvie Le Guyader, Carolina Wählby
Automated Training of Deep Convolutional Neural Networks for Cell Segmentation. Scientific reports 7 (1) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Carolina Wählby