Paolo Franchini

ResearcherID Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 23

Top Topics

Gene Expression

Top Venues

Molecular ecology

Integrative zoology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Alessandra Riccieri, Lucrezia Spagoni, Ming Li, Paolo Franchini, Marianna Nicoletta Rossi, Emiliano Fratini, Manuela Cervelli, Marco A Bologna, Emiliano Mancini
Comparative genomics provides insights into molecular adaptation to hypermetamorphosis and cantharidin metabolism in blister beetles (Coleoptera: Meloidae). Integrative zoology (2024)
Manfred Schartl, Joost M Woltering, Iker Irisarri, Kang Du, Susanne Kneitz, Martin Pippel, Thomas Brown, Paolo Franchini, Jing Li, Ming Li, Mateus Adolfi, Sylke Winkler, Josane de Freitas Sousa, Zhuoxin Chen, Sandra Jacinto, Evgeny Z Kvon, Luis Rogério Correa de Oliveira, Erika Monteiro, Danielson Baia Amaral, Thorsten Burmester, Domitille Chalopin, Alexander Suh, Eugene W Myers, Oleg Simakov, Igor Schneider, Axel Meyer
The genomes of all lungfish inform on genome expansion and tetrapod evolution. Nature (2024)
Manfred Schartl, Joost M Woltering, Iker Irisarri, Kang Du, Susanne Kneitz, Martin Pippel, Thomas Brown, Paolo Franchini, Jing Li, Ming Li, Mateus Adolfi, Sylke Winkler, Josane de Freitas Sousa, Zhuoxin Chen, Sandra Jacinto, Evgeny Z Kvon, Luis Rogério Correa de Oliveira, Erika Monteiro, Danielson Baia Amaral, Thorsten Burmester, Domitille Chalopin, Alexander Suh, Eugene W Myers, Oleg Simakov, Igor Schneider, Axel Meyer
The genomes of all lungfish inform on genome expansion and tetrapod evolution. Nature (2024)
Alessandra Riccieri, Lucrezia Spagoni, Ming Li, Paolo Franchini, Marianna Nicoletta Rossi, Emiliano Fratini, Manuela Cervelli, Marco A Bologna, Emiliano Mancini
Comparative genomics provides insights into molecular adaptation to hypermetamorphosis and cantharidin metabolism in blister beetles (Coleoptera: Meloidae). Integrative zoology (2024)
Alessandra Riccieri, Lucrezia Spagoni, Ming Li, Paolo Franchini, Marianna Nicoletta Rossi, Emiliano Fratini, Manuela Cervelli, Marco A Bologna, Emiliano Mancini
Comparative genomics provides insights into molecular adaptation to hypermetamorphosis and cantharidin metabolism in blister beetles (Coleoptera: Meloidae). Integrative zoology 19 (5) (2024)
Nicolás Roberto Ehemann, Paolo Franchini, Axel Meyer, Christopher Darrin Hulsey
Meristic co-evolution and genomic co-localization of lateral line scales and vertebrae in Central American cichlid fishes. Ecology and evolution 14 (9) (2024)
Manfred Schartl, Joost M Woltering, Iker Irisarri, Kang Du, Susanne Kneitz, Martin Pippel, Thomas Brown, Paolo Franchini, Jing Li, Ming Li, Mateus Adolfi, Sylke Winkler, Josane de Freitas Sousa, Zhuoxin Chen, Sandra Jacinto, Evgeny Z Kvon, Luis Rogério Correa de Oliveira, Erika Monteiro, Danielson Baia Amaral, Thorsten Burmester, Domitille Chalopin, Alexander Suh, Eugene W Myers, Oleg Simakov, Igor Schneider, Axel Meyer
The genomes of all lungfish inform on genome expansion and tetrapod evolution. Nature (2024)
Paolo Franchini, Carmelo Fruciano, Thomas J Wood, Vivaswat Shastry, Dave Goulson, William O H Hughes, Julia C Jones
Limited introgression from non-native commercial strains and signatures of adaptation in the key pollinator Bombus terrestris. Molecular ecology (2023)
Elinor Jax, Paolo Franchini, Vaishnovi Sekar, Jente Ottenburghs, Daniel Monné Parera, Roman T Kellenberger, Katharine E Magor, Inge Müller, Martin Wikelski, Robert H S Kraus
Comparative Genomics of the Waterfowl Innate Immune System. Molecular biology and evolution 39 (8) (2022)
Claudius F Kratochwil, Yipeng Liang, Jan Gerwin, Paolo Franchini, Axel Meyer
Comparative ontogenetic and transcriptomic analyses shed light on color pattern divergence in cichlid fishes. Evolution & development 24 (5) (2022)
Axel Meyer, Siegfried Schloissnig, Paolo Franchini, Kang Du, Joost M Woltering, Iker Irisarri, Wai Yee Wong, Sergej Nowoshilow, Susanne Kneitz, Akane Kawaguchi, Andrej Fabrizius, Peiwen Xiong, Corentin Dechaud, Herman P Spaink, Jean-Nicolas Volff, Oleg Simakov, Thorsten Burmester, Elly M Tanaka, Manfred Schartl
Giant lungfish genome elucidates the conquest of land by vertebrates. Nature 590 (7845) (2021)
Peiwen Xiong, Christopher Darrin Hulsey, Carmelo Fruciano, Wai Yee Wong, Alexander Nater, Andreas F Kautt, Oleg Simakov, Martin Pippel, Shigehiro Kuraku, Axel Meyer, Paolo Franchini
The comparative genomic landscape of adaptive radiation in crater lake cichlid fishes. Molecular ecology 30 (4) (2021)
Arang Rhie, Shane A McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim, Chul Lee, Byung June Ko, Mark Chaisson, Gregory L Gedman, Lindsey J Cantin, Françoise Thibaud-Nissen, Leanne Haggerty, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C Vernes, Tanya M Lama, Frank Grützner, Wesley C Warren, Christopher N Balakrishnan, David W Burt, Julia M George, Matthew T Biegler, David Iorns, Andrew Digby, Daryl Eason, Bruce C Robertson, Taylor Edwards, Mark Wilkinson, George Turner, Axel Meyer, Andreas F Kautt, Paolo Franchini, Harry William Detrich, Hannes Svardal, Maximilian Wagner, Gavin J P Naylor, Martin Pippel, Milan Malinsky, Mark Mooney, Maria Simbirsky, Brett T Hannigan, Trevor Pesout, Marlys Houck, Ann Misuraca, Sarah B Kingan, Richard J Hall, Zev Kronenberg, Ivan Sović, Christopher Dunn, Zemin Ning, Alex Hastie, Joyce Lee, Siddarth Selvaraj, Richard E Green, Nicholas H Putnam, Ivo Glynne Gut, Jay Ghurye, Erik Garrison, Ying Sims, Joanna Collins, Sarah Pelan, James Torrance, Alan Tracey, Jonathan Wood, Robel E Dagnew, Dengfeng Guan, Sarah E London, David F Clayton, Claudio V Mello, Samantha R Friedrich, Peter V Lovell, Ekaterina Osipova, Farooq O Al-Ajli, Simona Secomandi, Heebal Kim, Constantina Theofanopoulou, Michael Hiller, Yang Zhou, Robert S Harris, Kateryna D Makova, Paul Medvedev, Jinna Hoffman, Patrick Masterson, Karen Clark, Fergal J Martin, Kevin Howe, Paul Flicek, Brian P Walenz, Woori Kwak, Hiram Clawson, Mark E Diekhans, Luis Nassar, Benedict Paten, Robert H S Kraus, Andrew J Crawford, Marcus Thomas Pius Gilbert, Guo-Jie Zhang, Byrappa Venkatesh, Robert W Murphy, Klaus-Peter Koepfli, Joshua D Kapp, Warren E Johnson, Federica Di Palma, Tomas Marques-Bonet, Emma C Teeling, Tandy Warnow, Jennifer Marshall Graves, Oliver A Ryder, David Haussler, Stephen J O'Brien, Jonas Korlach, Harris A Lewin, Kerstin Howe, Eugene W Myers, Richard Durbin, Adam M Phillippy, Erich D Jarvis
Towards complete and error-free genome assemblies of all vertebrate species. Nature 592 (7856) (2021)
Carmelo Fruciano, Paolo Franchini, Julia C Jones
Capturing the rapidly evolving study of adaptation. Journal of evolutionary biology 34 (6) (2021)
Boris A Levin, Evgeniy Simonov, Paolo Franchini, Nikolai Mugue, Alexander Golubtsov, Axel Meyer
Rapid adaptive radiation in a hillstream cyprinid fish in the East African White Nile River basin. Molecular ecology 30 (21) (2021)
Andreas F Kautt, Claudius F Kratochwil, Alexander Nater, Gonzalo Machado-Schiaffino, Melisa Olave, Frederico Henning, Julián Torres-Dowdall, Andreas Härer, C Darrin Hulsey, Paolo Franchini, Martin Pippel, Eugene W Myers, Axel Meyer
Contrasting signatures of genomic divergence during sympatric speciation. Nature 588 (7836) (2020)
Francisca M Real, Stefan A Haas, Paolo Franchini, Peiwen Xiong, Oleg Simakov, Heiner Kuhl, Robert Schöpflin, David Heller, M-Hossein Moeinzadeh, Verena Heinrich, Thomas Krannich, Annkatrin Bressin, Michaela Friederike Hartmann, Stefan A Wudy, Dina K N Dechmann, Alicia Hurtado, Francisco Javier Barrionuevo, Magdalena Schindler, Izabela Harabula, Marco Osterwalder, Michael Hiller, Lars Wittler, Axel Visel, Bernd Timmermann, Axel Meyer, Martin Vingron, Rafael Jiménez, Stefan Mundlos, Darío G Lupiáñez
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality. Science (New York, N.Y.) 370 (6513) (2020)
Peiwen Xiong, Ralf F Schneider, C Darrin Hulsey, Axel Meyer, Paolo Franchini
Conservation and novelty in the microRNA genomic landscape of hyperdiverse cichlid fishes. Scientific reports 9 (1) (2019)
Francesca Raffini, Ralph F Schneider, Paolo Franchini, Andreas F Kautt, Axel Meyer
Diving into divergence: Differentiation in swimming performances, physiology and gene expression between locally-adapted sympatric cichlid fishes. Molecular ecology 29 (7) (2019)
Paolo Franchini, Julia C Jones, Peiwen Xiong, Susanne Kneitz, Zachariah Gompert, Wesley C Warren, Ronald B Walter, Axel Meyer, Manfred Schartl
Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish. Nature communications 9 (1) (2018)
Iker Irisarri, Pooja Singh, Stephan Koblmueller, Julián Torres-Dowdall, Frederico Henning, Paolo Franchini, Christoph Fischer, Alan R Lemmon, Emily Moriarty Lemmon, Gerhard G Thallinger, Christian Sturmbauer, Axel Meyer
Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes. Nature communications 9 (1) (2018)
Paolo Franchini, Daniel Monné Parera, Andreas F Kautt, Axel Meyer
quaddRAD: a new high-multiplexing and PCR duplicate removal ddRAD protocol produces novel evolutionary insights in a nonradiating cichlid lineage. Molecular ecology 26 (10) (2017)
Paolo Franchini, Iker Irisarri, Adam Fudickar, Andreas Schmidt, Axel Meyer, Martin Wikelski, Jesko Partecke
Animal tracking meets migration genomics: transcriptomic analysis of a partially migratory bird species. Molecular ecology 26 (12) (2017)