Marcela Uliano-Silva

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 11

Top Topics

Dna Methylation

Quality Control

Gene Expression

Top Venues

Molecular biology and evolution

GigaByte (Hong Kong, China)

BMC bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Jun Ishigohoka, Karen Bascón-Cardozo, Andrea Bours, Janina Fuß, Arang Rhie, Jacquelyn Mountcastle, Bettina Haase, William Chow, Joanna Collins, Kerstin Howe, Marcela Uliano-Silva, Olivier Fedrigo, Erich D Jarvis, Javier Pérez-Tris, Juan Carlos Illera, Miriam Liedvogel
Distinct patterns of genetic variation at low-recombining genomic regions represent haplotype structure. Evolution; international journal of organic evolution (2024)
Vladimir Ovchinnikov, Marcela Uliano-Silva, Mark Wilkinson, Jonathan Wood, Michelle Smith, Karen Oliver, Ying Sims, James Torrance, Alexander Suh, Shane A McCarthy, Richard Durbin, Mary J O'Connell
Caecilian genomes reveal the molecular basis of adaptation, and convergent evolution of limblessness in snakes and caecilians. Molecular biology and evolution (2023)
Vladimir Ovchinnikov, Marcela Uliano-Silva, Mark Wilkinson, Jonathan Wood, Michelle Smith, Karen Oliver, Ying Sims, James Torrance, Alexander Suh, Shane A McCarthy, Richard Durbin, Mary J O'Connell
Caecilian genomes reveal the molecular basis of adaptation, and convergent evolution of limblessness in snakes and caecilians. Molecular biology and evolution (2023)
Marcela Uliano-Silva, João Gabriel R N Ferreira, Ksenia Krasheninnikova, null null, Giulio Formenti, Linelle Abueg, James W Torrance, Eugene W Myers, Richard Durbin, Mark L Blaxter, Shane A McCarthy
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. BMC bioinformatics 24 (1) (2023)
Vladimir Ovchinnikov, Marcela Uliano-Silva, Mark Wilkinson, Jonathan Wood, Michelle Smith, Karen Oliver, Ying Sims, James Torrance, Alexander Suh, Shane A McCarthy, Richard Durbin, Mary J O'Connell
Caecilian genomes reveal the molecular basis of adaptation, and convergent evolution of limblessness in snakes and caecilians. Molecular biology and evolution (2023)
Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjoern Andreas Gruening, Byung June Ko, Alexander Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O'Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti
Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy. bioRxiv : the preprint server for biology (2023)
João Gabriel R N Ferreira, Juliana A Americo, Danielle Amaral, Fábio Sendim, Yasmin R da Cunha, null null, Mark L Blaxter, Marcela Uliano-Silva, Mauro F Rebelo
A chromosome-level assembly supports genome-wide investigation of the DMRT gene family in the golden mussel (Limnoperna fortunei). GigaScience 12 (2023)
Ralf C Mueller, Patrik Ellström, Kerstin Howe, Marcela Uliano-Silva, Richard I Kuo, Katarzyna Miedzinska, Amanda Warr, Olivier Fedrigo, Bettina Haase, Jacquelyn Mountcastle, William Chow, James W Torrance, Jonathan M D Wood, Josef D Järhult, Mahmoud M Naguib, Björn Olsen, Erich D Jarvis, Jacqueline Smith, Lél Eöry, Robert H S Kraus
A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck). GigaScience 10 (12) (2022)
Alexandre Wagner Silva Hilsdorf, Marcela Uliano-Silva, Luiz Lehmann Coutinho, Horacio Montenegro, Vera Maria Fonseca Almeida-Val, Danillo Pinhal
Genome assembly and annotation of the tambaqui ( Colossoma macropomum ): an emblematic fish of the Amazon River Basin. GigaByte (Hong Kong, China) 2021 (2021)
Arang Rhie, Shane A McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim, Chul Lee, Byung June Ko, Mark Chaisson, Gregory L Gedman, Lindsey J Cantin, Françoise Thibaud-Nissen, Leanne Haggerty, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C Vernes, Tanya M Lama, Frank Grützner, Wesley C Warren, Christopher N Balakrishnan, David W Burt, Julia M George, Matthew T Biegler, David Iorns, Andrew Digby, Daryl Eason, Bruce C Robertson, Taylor Edwards, Mark Wilkinson, George Turner, Axel Meyer, Andreas F Kautt, Paolo Franchini, Harry William Detrich, Hannes Svardal, Maximilian Wagner, Gavin J P Naylor, Martin Pippel, Milan Malinsky, Mark Mooney, Maria Simbirsky, Brett T Hannigan, Trevor Pesout, Marlys Houck, Ann Misuraca, Sarah B Kingan, Richard J Hall, Zev Kronenberg, Ivan Sović, Christopher Dunn, Zemin Ning, Alex Hastie, Joyce Lee, Siddarth Selvaraj, Richard E Green, Nicholas H Putnam, Ivo Glynne Gut, Jay Ghurye, Erik Garrison, Ying Sims, Joanna Collins, Sarah Pelan, James Torrance, Alan Tracey, Jonathan Wood, Robel E Dagnew, Dengfeng Guan, Sarah E London, David F Clayton, Claudio V Mello, Samantha R Friedrich, Peter V Lovell, Ekaterina Osipova, Farooq O Al-Ajli, Simona Secomandi, Heebal Kim, Constantina Theofanopoulou, Michael Hiller, Yang Zhou, Robert S Harris, Kateryna D Makova, Paul Medvedev, Jinna Hoffman, Patrick Masterson, Karen Clark, Fergal J Martin, Kevin Howe, Paul Flicek, Brian P Walenz, Woori Kwak, Hiram Clawson, Mark E Diekhans, Luis Nassar, Benedict Paten, Robert H S Kraus, Andrew J Crawford, Marcus Thomas Pius Gilbert, Guo-Jie Zhang, Byrappa Venkatesh, Robert W Murphy, Klaus-Peter Koepfli, Joshua D Kapp, Warren E Johnson, Federica Di Palma, Tomas Marques-Bonet, Emma C Teeling, Tandy Warnow, Jennifer Marshall Graves, Oliver A Ryder, David Haussler, Stephen J O'Brien, Jonas Korlach, Harris A Lewin, Kerstin Howe, Eugene W Myers, Richard Durbin, Adam M Phillippy, Erich D Jarvis
Towards complete and error-free genome assemblies of all vertebrate species. Nature 592 (7856) (2021)
Alexandre Wagner Silva Hilsdorf, Marcela Uliano-Silva, Luiz Lehmann Coutinho, Horacio Montenegro, Vera Maria Fonseca Almeida-Val, Danillo Pinhal
Genome assembly and annotation of the tambaqui ( Colossoma macropomum ): an emblematic fish of the Amazon River Basin. GigaByte (Hong Kong, China) 2021 (2021)