Paul Dupree (P Dupree)

Loop profile ResearcherID Ciência ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 51

Top Topics

Finite Element Analysis

Top Venues

Nature communications

The Plant journal : for cell and molecular biology

Communications biology

The New phytologist

This page only lists publications with an associated author ORCID identifier.

Publications

Theodora Tryfona, Yanina Pankratova, Deborah L Petrik, Diego Rebaque Moran, Raymond Wightman, Xiaolan Yu, Alberto Echevarría-Poza, Parveen Kumar Deralia, Francisco Vilaplana, Charles T Anderson, Mei Hong, Paul Dupree
Altering the substitution and cross-linking of glucuronoarabinoxylans affects cell wall architecture in Brachypodium distachyon. The New phytologist 242 (2) (2024)
Li Yu, Louis F L Wilson, Oliver M Terrett, Joel Wurman-Rodrich, Jan J Lyczakowski, Xiaolan Yu, Kristian B R M Krogh, Paul Dupree
Evolution of glucuronoxylan side chain variability in vascular plants and the compensatory adaptations of cell wall-degrading hydrolases. The New phytologist (2024)
Theodora Tryfona, Yanina Pankratova, Deborah L Petrik, Diego Rebaque Moran, Raymond Wightman, Xiaolan Yu, Alberto Echevarría-Poza, Parveen Kumar Deralia, Francisco Vilaplana, Charles T Anderson, Mei Hong, Paul Dupree
Altering the substitution and cross-linking of glucuronoarabinoxylans affects cell wall architecture in Brachypodium distachyon. The New phytologist 242 (2) (2024)
Theodora Tryfona, Yanina Pankratova, Deborah L Petrik, Diego Rebaque Moran, Raymond Wightman, Xiaolan Yu, Alberto Echevarría-Poza, Parveen Kumar Deralia, Francisco Vilaplana, Charles T Anderson, Mei Hong, Paul Dupree
Altering the substitution and cross-linking of glucuronoarabinoxylans affects cell wall architecture in Brachypodium distachyon. The New phytologist (2024)
Daniel J Cosgrove, Paul Dupree, Enrique D Gomez, Candace H Haigler, James D Kubicki, Jochen Zimmer
How Many Glucan Chains Form Plant Cellulose Microfibrils? A Mini Review. Biomacromolecules (2024)
Alan Crivellaro, Alma Piermattei, Jiří Doležal, Paul Dupree, Ulf Bünten
Author Correction: Biogeographic implication of temperature-induced plant cell wall lignification. Communications biology 6 (1) (2023)
Theodora Tryfona, Matthieu Bourdon, Rita Delgado Marques, Marta Busse-Wicher, Francisco Vilaplana, Katherine Stott, Paul Dupree
Grass xylan structural variation suggests functional specialization and distinctive interaction with cellulose and lignin. The Plant journal : for cell and molecular biology 113 (5) (2023)
Ulf Bünten, Alma Piermattei, Jiří Doležal, Paul Dupree, Alan Crivellaro
Reply to: Biogeographic implications of plant stature and microclimate in cold regions. Communications biology 6 (1) (2023)
Konan Ishida, Yusuke Ohba, Yoshihisa Yoshimi, Louis F L Wilson, Alberto Echevarría-Poza, Li Yu, Hiroaki Iwai, Paul Dupree
Differing structures of galactoglucomannan in eudicots and non-eudicot angiosperms. PloS one 18 (12) (2023)
Konan Ishida, Yusuke Ohba, Yoshihisa Yoshimi, Louis F L Wilson, Alberto Echevarría-Poza, Li Yu, Hiroaki Iwai, Paul Dupree
Differing structures of galactoglucomannan in eudicots and non-eudicot angiosperms. PloS one 18 (12) (2023)
Ulf Bünten, Alma Piermattei, Jiří Doležal, Paul Dupree, Alan Crivellaro
Reply to: Biogeographic implications of plant stature and microclimate in cold regions. Communications biology 6 (1) (2023)
Theodora Tryfona, Matthieu Bourdon, Rita Delgado Marques, Marta Busse-Wicher, Francisco Vilaplana, Katherine Stott, Paul Dupree
Grass xylan structural variation suggests functional specialisation and distinctive interaction with cellulose and lignin. The Plant journal : for cell and molecular biology (2023)
Theodora Tryfona, Matthieu Bourdon, Rita Delgado Marques, Marta Busse-Wicher, Francisco Vilaplana, Katherine Stott, Paul Dupree
Grass xylan structural variation suggests functional specialization and distinctive interaction with cellulose and lignin. The Plant journal : for cell and molecular biology 113 (5) (2023)
Ulf Bünten, Alma Piermattei, Jiří Doležal, Paul Dupree, Alan Crivellaro
Reply to: Biogeographic implications of plant stature and microclimate in cold regions. Communications biology 6 (1) (2023)
Theodora Tryfona, Matthieu Bourdon, Rita Delgado Marques, Marta Busse-Wicher, Francisco Vilaplana, Katherine Stott, Paul Dupree
Grass xylan structural variation suggests functional specialization and distinctive interaction with cellulose and lignin. The Plant journal : for cell and molecular biology 113 (5) (2023)
Theodora Tryfona, Matthieu Bourdon, Rita Delgado Marques, Marta Busse-Wicher, Francisco Vilaplana, Katherine Stott, Paul Dupree
Grass xylan structural variation suggests functional specialization and distinctive interaction with cellulose and lignin. The Plant journal : for cell and molecular biology (2023)
Matthieu Bourdon, Jan J Lyczakowski, Rosalie Cresswell, Samuel Amsbury, Francisco Vilaplana, Marie-Joo Le Guen, Nadège Follain, Raymond Wightman, Chang Su, Fulgencio Alatorre-Cobos, Maximilian Ritter, Aleksandra Liszka, Oliver M Terrett, Shri Ram Yadav, Anne Vatén, Kaisa Nieminen, Gugan Eswaran, Juan Alonso-Serra, Karin H Müller, Dinu Iuga, Pal Csaba Miskolczi, Lothar Kalmbach, Sofia Otero, Anne-Maarit Bågman, Rishikesh P Bhalerao, Vincent Bulone, Shawn D Mansfield, Stefan J Hill, Ingo Burgert, Johnny Beaugrand, Yoselin Benitez-Alfonso, Ray Dupree, Paul Dupree, Yrjö Helariutta
Ectopic callose deposition into woody biomass modulates the nano-architecture of macrofibrils. Nature plants (2023)
Konan Ishida, Yusuke Ohba, Yoshihisa Yoshimi, Louis F L Wilson, Alberto Echevarría-Poza, Li Yu, Hiroaki Iwai, Paul Dupree
Differing structures of galactoglucomannan in eudicots and non-eudicot angiosperms. PloS one 18 (12) (2023)
Louis F L Wilson, Stefanie Neun, Li Yu, Theodora Tryfona, Katherine Stott, Florian Hollfelder, Paul Dupree
The biosynthesis, degradation, and function of cell wall β-xylosylated xyloglucan mirrors that of arabinoxyloglucan. The New phytologist (2023)
Ulf Bünten, Alma Piermattei, Jiří Doležal, Paul Dupree, Alan Crivellaro
Reply to: Biogeographic implications of plant stature and microclimate in cold regions. Communications biology 6 (1) (2023)
Stefanie Neun, Paul D Brear, Eleanor Campbell, Theodora Tryfona, Kamel El Omari, Armin Wagner, Paul Dupree, Marko Hyvönen, Florian Hollfelder
Functional metagenomic screening identifies an unexpected β-glucuronidase. Nature chemical biology 18 (10) (2022)
Louis F L Wilson, Tom Dendooven, Steven W Hardwick, A Echevarría-Poza, Theodora Tryfona, K B R M Krogh, Dimitri Y Chirgadze, Ben F Luisi, Derek T Logan, Katrin Mani, Paul Dupree
The structure of EXTL3 helps to explain the different roles of bi-domain exostosins in heparan sulfate synthesis. Nature communications 13 (1) (2022)
Li Yu, Yoshihisa Yoshimi, Rosalie Cresswell, Raymond Wightman, Jan J Lyczakowski, Louis F L Wilson, Konan Ishida, Katherine Stott, Xiaolan L Yu, Stephan Charalambous, Joel Wurman-Rodrich, Oliver M Terrett, Steven P Brown, Ray Dupree, Henry Temple, Kristian B R M Krogh, Paul Dupree
Eudicot primary cell wall glucomannan is related in synthesis, structure, and function to xyloglucan. The Plant cell 34 (11) (2022)
Henry Temple, Pyae Phyo, Weibing Yang, Jan J Lyczakowski, Alberto Echevarría-Poza, Igor Yakunin, Juan Pablo Parra-Rojas, Oliver M Terrett, Susana Saez-Aguayo, Ray Dupree, Ariel Orellana, Mei Hong, Paul Dupree
Golgi-localized putative S-adenosyl methionine transporters required for plant cell wall polysaccharide methylation. Nature plants 8 (6) (2022)
Alan Crivellaro, Alma Piermattei, Jiří Doležal, Paul Dupree, Ulf Bünten
Biogeographic implication of temperature-induced plant cell wall lignification. Communications biology 5 (1) (2022)
Marco Antonio Seiki Kadowaki, Lorenzo Briganti, Danilo E Evangelista, Alberto Echevarría-Poza, Theodora Tryfona, Vanessa O A Pellegrini, Darlan G Nakayama, Paul Dupree, Igor Polikarpov
Unlocking the structural features for the xylobiohydrolase activity of an unusual GH11 member identified in a compost-derived consortium. Biotechnology and bioengineering 118 (10) (2021)
Pu Duan, Samuel J Kaser, Jan J Lyczakowski, Pyae Phyo, Theodora Tryfona, Paul Dupree, Mei Hong
Xylan Structure and Dynamics in Native Brachypodium Grass Cell Walls Investigated by Solid-State NMR Spectroscopy. ACS omega 6 (23) (2021)
Jan J Lyczakowski, Li Yu, Oliver M Terrett, Christina Fleischmann, Henry Temple, Glenn Thorlby, Mathias Sorieul, Paul Dupree
Two conifer GUX clades are responsible for distinct glucuronic acid patterns on xylan. The New phytologist 231 (5) (2021)
C Feijao, K Morreel, N Anders, T Tryfona, M Busse-Wicher, T Kotake, Wout Boerjan, Paul Dupree
Hydroxycinnamic acid modified xylan side chains and their cross-linking products in rice cell walls are reduced in the Xylosyl arabinosyl substitution of xylan 1 mutant. The Plant journal : for cell and molecular biology (2021)
Rosalie Cresswell, Ray Dupree, Steven P Brown, Caroline S Pereira, Munir Salomão Skaf, Mathias Sorieul, Paul Dupree, Stefan J Hill
Importance of Water in Maintaining Softwood Secondary Cell Wall Nanostructure. Biomacromolecules 22 (11) (2021)
Beibei Jing, Toshiki Ishikawa, Nicole Soltis, Noriko Inada, Yan Liang, Gosia M Murawska, Lin Fang, Fekadu Andeberhan, Ramana Pidatala, Xiaolan Yu, Edward Baidoo, Maki Kawai-Yamada, Dominique Loque, Daniel J Kliebenstein, Paul Dupree, Jennifer C Mortimer
The Arabidopsis thaliana nucleotide sugar transporter GONST2 is a functional homolog of GONST1. Plant direct 5 (3) (2021)
Deborah L Petrik, Theodora Tryfona, Paul Dupree, Charles T Anderson
BdGT43B2 functions in xylan biosynthesis and is essential for seedling survival in Brachypodium distachyon. Plant direct 4 (4) (2020)
Dyoni M Oliveira, Thatiane R Mota, Fábio V Salatta, Renata C Sinzker, Radka Končitíková, David Kopečný, Rachael Simister, Mariana Silva, Geert Goeminne, Kris Morreel, Jorge Rencoret, Ana Gutiérrez, Theodora Tryfona, Rogério Marchiosi, Paul Dupree, José Carlos Del Río, Wout Boerjan, Simon J McQueen-Mason, Leonardo Dario Gomez, Osvaldo Ferrarese-Filho, Wanderley Dantas Dos Santos
Cell wall remodeling under salt stress: Insights into changes in polysaccharides, feruloylation, lignification, and phenolic metabolism in maize. Plant, cell & environment 43 (9) (2020)
Tobias Tandrup, Theodora Tryfona, Kristian Erik Høpfner Frandsen, Katja Salomon Johansen, Paul Dupree, Leila Lo Leggio
Oligosaccharide Binding and Thermostability of Two Related AA9 Lytic Polysaccharide Monooxygenases. Biochemistry 59 (36) (2020)
Federico Lopez-Hernandez, Theodora Tryfona, Annalisa Rizza, Xiaolan L Yu, Matthew O B Harris, Alex A R Webb, Toshihisa Kotake, Paul Dupree
Calcium Binding by Arabinogalactan Polysaccharides Is Important for Normal Plant Development. The Plant cell 32 (10) (2020)
Clelton Aparecido Dos Santos, Mariana A B Morais, Oliver M Terrett, Jan J Lyczakowski, Letícia M Zanphorlin, Jaire A Ferreira-Filho, Celisa C C Tonoli, Mario T Murakami, Paul Dupree, Anete Pereira de Souza
An engineered GH1 β-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials. Scientific reports 9 (1) (2019)
Theodora Tryfona, Mathias Sorieul, Carolina Feijao, Katherine Stott, Denis V Rubtsov, Nadine Anders, Paul Dupree
Development of an oligosaccharide library to characterise the structural variation in glucuronoarabinoxylan in the cell walls of vegetative tissues in grasses. Biotechnology for biofuels 12 (2019)
Oliver M Terrett, Jan J Lyczakowski, Li Yu, Dinu Iuga, W Trent Franks, Steven P Brown, Ray Dupree, Paul Dupree
Molecular architecture of softwood revealed by solid-state NMR. Nature communications 10 (1) (2019)
Federico Sabbadin, Glyn R Hemsworth, Luisa Ciano, Bernard Henrissat, Paul Dupree, Theodora Tryfona, Rita D S Marques, Sean T Sweeney, Katrin Besser, Luisa Elias, Giovanna Pesante, Yi Li, Adam A Dowle, Rachel Bates, Leonardo D Gomez, Rachael Simister, Gideon J Davies, Paul H Walton, Neil C Bruce, Simon J McQueen-Mason
An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion. Nature communications 9 (1) (2018)
Li Yu, Jan J Lyczakowski, Caroline S Pereira, Toshihisa Kotake, Xiaolan Yu, An Li, Soren Mogelsvang, Munir Salomão Skaf, Paul Dupree
The Patterned Structure of Galactoglucomannan Suggests It May Bind to Cellulose in Seed Mucilage. Plant physiology 178 (3) (2018)
Katrin Besser, Graham P Malyon, William S Eborall, Giovanni Paro da Cunha, Jefferson G Filgueiras, Adam Dowle, Lourdes Cruz Garcia, Samuel J Page, Ray Dupree, Marcelo Kern, Leonardo Dario Gomez, Yi Li, Luisa Elias, Federico Sabbadin, Shaza E Mohamad, Giovanna Pesante, Clare Steele-King, Eduardo Ribeiro de Azevedo, Igor Polikarpov, Paul Dupree, Simon M Cragg, Neil C Bruce, Simon J McQueen-Mason
Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans. Nature communications 9 (1) (2018)
Jan J Lyczakowski, Krzysztof B Wicher, Oliver M Terrett, Nuno Faria-Blanc, Xiaolan Yu, David Brown, Kristian B R M Krogh, Paul Dupree, Marta Busse-Wicher
Removal of glucuronic acid from xylan is a strategy to improve the conversion of plant biomass to sugars for bioenergy. Biotechnology for biofuels 10 (2017)
Nicholas J Grantham, Joel Wurman-Rodrich, Oliver M Terrett, Jan J Lyczakowski, Katherine Stott, Dinu Iuga, Thomas J Simmons, Mylene Durand-Tardif, Steven P Brown, Ray Dupree, Marta Busse-Wicher, Paul Dupree
An even pattern of xylan substitution is critical for interaction with cellulose in plant cell walls. Nature plants 3 (11) (2017)
T J Simmons, Kristian Erik Høpfner Frandsen, Luisa Ciano, T Tryfona, N Lenfant, J C Poulsen, Louis F L Wilson, T Tandrup, M Tovborg, K Schnorr, K S Johansen, B Henrissat, Paul H Walton, Leila Lo Leggio, Paul Dupree
Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates. Nature communications 8 (1) (2017)
Susana Saez-Aguayo, Carsten Rautengarten, Henry Temple, Dayan Sanhueza, Troy Ejsmentewicz, Omar Sandoval-Ibañez, Daniela Doñas, Juan Pablo Parra-Rojas, Berit Ebert, Arnaud Lehner, Jean-Claude Mollet, Paul Dupree, Henrik Vibe Scheller, Joshua L Heazlewood, Francisca C Reyes, Ariel Orellana
UUAT1 Is a Golgi-Localized UDP-Uronic Acid Transporter That Modulates the Polysaccharide Composition of Arabidopsis Seed Mucilage. The Plant cell 29 (1) (2017)
Yi Zhang, Nino Nikolovski, Mathias Sorieul, Tamara Vellosillo, Heather E McFarlane, Ray Dupree, Christopher Kesten, René Schneider, Carlos E Driemeier, Rahul Lathe, Edwin Lampugnani, Xiaolan Yu, Alexander Ivakov, Monika S Doblin, Jenny C Mortimer, Steven P Brown, Staffan Persson, Paul Dupree
Golgi-localized STELLO proteins regulate the assembly and trafficking of cellulose synthase complexes in Arabidopsis. Nature communications 7 (2016)
Kristian E H Frandsen, Thomas J Simmons, Paul Dupree, Jens-Christian N Poulsen, Glyn R Hemsworth, Luisa Ciano, Esther M Johnston, Morten Tovborg, Katja S Johansen, Pernille von Freiesleben, Laurence Marmuse, Sébastien Fort, Sylvain Cottaz, Hugues Driguez, Bernard Henrissat, Nicolas Lenfant, Floriana Tuna, Amgalanbaatar Baldansuren, Gideon J Davies, Leila Lo Leggio, Paul H Walton
The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases. Nature chemical biology 12 (4) (2016)
Thomas J Simmons, Jenny C Mortimer, Oigres D Bernardinelli, Ann-Christin Pöppler, Steven P Brown, Eduardo R deAzevedo, Ray Dupree, Paul Dupree
Folding of xylan onto cellulose fibrils in plant cell walls revealed by solid-state NMR. Nature communications 7 (2016)
Marta Busse-Wicher, An Li, Rodrigo L Silveira, Caroline S Pereira, Theodora Tryfona, Thiago C F Gomes, Munir Salomão Skaf, Paul Dupree
Evolution of Xylan Substitution Patterns in Gymnosperms and Angiosperms: Implications for Xylan Interaction with Cellulose. Plant physiology 171 (4) (2016)
Shota Sawake, Noriaki Tajima, Jennifer C Mortimer, Jeemeng Lao, Toshiki Ishikawa, Xiaolan Yu, Yukiko Yamanashi, Yoshihisa Yoshimi, Maki Kawai-Yamada, Paul Dupree, Yoichi Tsumuraya, Toshihisa Kotake
KONJAC1 and 2 Are Key Factors for GDP-Mannose Generation and Affect l-Ascorbic Acid and Glucomannan Biosynthesis in Arabidopsis. The Plant cell 27 (12) (2015)
Tatayana A Gorshkova, Natalia Mokshina, Tatyana Chernova, Nadezhda Ibragimova, Vadim V Salnikov, Polina Mikshina, Theodora Tryfona, Alicja Banasiak, Peter Immerzeel, Paul Dupree, Ewa J Mellerowicz
Aspen Tension Wood Fibers Contain β-(1---> 4)-Galactans and Acidic Arabinogalactans Retained by Cellulose Microfibrils in Gelatinous Walls. Plant physiology 169 (3) (2015)
Nino Nikolovski, Pavel V Shliaha, Laurent Gatto, Paul Dupree, Kathryn S Lilley
Label-free protein quantification for plant Golgi protein localization and abundance. Plant physiology 166 (2) (2014)