Laurent Gatto

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 40

Top Venues

Nature methods

PLoS computational biology

Nature communications

PLoS pathogens

Université Catholique de Louvain

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Université Catholique de Louvain Sep 01 2018

Belgium

Professor :: de Duve Institute

University of Cambridge Oct 01 2013 - Jun 30 2018

United Kingdom

Senior Research Associate :: Department of Biochemistry

University of Cambridge Jan 04 2010 - Oct 01 2013

United Kingdom

Post-Doctoral Research Associate :: Department of Biochemistry

Publications

Bradley Ward, Sebastien Pyr Dit Ruys, Jean-Luc Balligand, Leïla Belkhir, Patrice D Cani, Jean-François Collet, Julien de Greef, Joseph P Dewulf, Laurent Gatto, Vincent Haufroid, Sébastien Jodogne, Benoît Kabamba, Maxime Lingurski, Jean Cyr Yombi, Didier Vertommen, Laure Elens
Deep Plasma Proteomics with Data-Independent Acquisition: Clinical Study Protocol Optimization with a COVID-19 Cohort. Journal of proteome research (2024)
Kelly B Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedin C Culhane, Laurent Gatto, Vincent Carey, Martin Morgan, Davide Risso, Levi Waldron
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS computational biology 19 (8) (2023)
Lila Gannoun, Catalina De Schrevel, Morgane Belle, Nicolas Dauguet, Younes Achouri, Axelle Loriot, Christophe Vanderaa, Sabine Cordi, Alexandra Dili, Yves Heremans, Ilse Rooman, Isabelle A Leclercq, Patrick Jacquemin, Laurent Gatto, Frédéric P Lemaigre
Axon guidance genes control hepatic artery development. Development (Cambridge, England) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Christophe Vanderaa, Laurent Gatto
Revisiting the Thorny Issue of Missing Values in Single-Cell Proteomics. Journal of proteome research (2023)
Arthur Colson, Christophe Louis Depoix, Isaline Lambert, Camille Leducq, Marie Bedin, Michèle De Beukelaer, Laurent Gatto, Axelle Loriot, Maureen Peers de Nieuwburgh, Khadija Bouhna, Pamela Baldin, Corinne Hubinont, Pierre Sonveaux, Frédéric Debiève
Specific HIF-2α (Hypoxia-Inducible Factor-2) Inhibitor PT2385 Mitigates Placental Dysfunction In Vitro and in a Rat Model of Preeclampsia (RUPP). Hypertension (Dallas, Tex. : 1979) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Alexandra L Degraeve, Vincent Haufroid, Axelle E Loriot, Laurent Gatto, Vanessa Andries, Lars Vereecke, Laure Elens, Laure B Bindels
Gut microbiome modulates tacrolimus pharmacokinetics through the transcriptional regulation of ABCB1. Microbiome 11 (1) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods (2023)
Jingjing Zhu, Stefan Naulaerts, Loubna Boudhan, Manon Martin, Laurent Gatto, Benoit J Van den Eynde
Tumour immune rejection triggered by activation of α2-adrenergic receptors. Nature (2023)
Antoine A Harvengt, Olivier G Polle, Manon Martin, Aline van Maanen, Laurent Gatto, Philippe A Lysy
Post-Hypoglycemic hyperglycemia are highly relevant markers for stratification of glycemic variability and partial remission status of pediatric patients with new-onset type 1 diabetes. PloS one 18 (11) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Belén Lizcano-Perret, Cécile Lardinois, Fanny Wavreil, Philippe Hauchamps, Gaëtan Herinckx, Frédéric Sorgeloos, Didier Vertommen, Laurent Gatto, Thomas Michiels
Cardiovirus leader proteins retarget RSK kinases toward alternative substrates to perturb nucleocytoplasmic traffic. PLoS pathogens 18 (12) (2022)
Oliver M Crook, Colin T R Davies, Lisa M Breckels, Josie A Christopher, Laurent Gatto, Paul D W Kirk, Kathryn S Lilley
Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE. Nature communications 13 (1) (2022)
Belén Lizcano-Perret, Cécile Lardinois, Fanny Wavreil, Philippe Hauchamps, Gaëtan Herinckx, Frédéric Sorgeloos, Didier Vertommen, Laurent Gatto, Thomas Michiels
Cardiovirus leader proteins retarget RSK kinases toward alternative substrates to perturb nucleocytoplasmic traffic. PLoS pathogens 18 (12) (2022)
Justine Dontaine, Asma Bouali, Frédéric Nicolas Daussin, Laurent Bultot, Didier Vertommen, Manon Martin, Raahulan Rathagirishnan, Alexanne Cuillerier, Sandrine Horman, Christophe Beauloye, Laurent Gatto, Benjamin Lauzier, Luc Bertrand, Yan Burelle
The intra-mitochondrial O-GlcNAcylation system rapidly modulates OXPHOS function and ROS release in the heart. Communications biology 5 (1) (2022)
Belén Lizcano-Perret, Cécile Lardinois, Fanny Wavreil, Philippe Hauchamps, Gaëtan Herinckx, Frédéric Sorgeloos, Didier Vertommen, Laurent Gatto, Thomas Michiels
Cardiovirus leader proteins retarget RSK kinases toward alternative substrates to perturb nucleocytoplasmic traffic. PLoS pathogens 18 (12) (2022)
Belén Lizcano-Perret, Cécile Lardinois, Fanny Wavreil, Philippe Hauchamps, Gaëtan Herinckx, Frédéric Sorgeloos, Didier Vertommen, Laurent Gatto, Thomas Michiels
Cardiovirus leader proteins retarget RSK kinases toward alternative substrates to perturb nucleocytoplasmic traffic. PLoS pathogens 18 (12) (2022)
Johannes Rainer, Andrea Vicini, Liesa Salzer, Jan Stanstrup, Josep M Badia, Steffen Neumann, Michael A Stravs, Vinicius Verri Hernandes, Laurent Gatto, Sebastian Gibb, Michael Witting
A Modular and Expandable Ecosystem for Metabolomics Data Annotation in R. Metabolites 12 (2) (2022)
Bradley Ward, Jean Cyr Yombi, Jean-Luc Balligand, Patrice D Cani, Jean-François Collet, Julien de Greef, Joseph P Dewulf, Laurent Gatto, Vincent Haufroid, Sébastien Jodogne, Benoit M Kabamba, Sebastien Pyr Dit Ruys, Didier Vertommen, Laure Elens, Leila Belkhir
HYGIEIA: HYpothesizing the Genesis of Infectious Diseases and Epidemics through an Integrated Systems Biology Approach. Viruses 14 (7) (2022)
Ophélie Delcorte, Catherine Spourquet, Pascale Lemoine, Jonathan Degosserie, Patrick Van Der Smissen, Nicolas Dauguet, Axelle Loriot, Jeffrey A Knauf, Laurent Gatto, Etienne Marbaix, James A Fagin, Christophe E Pierreux
BRAF V600E Induction in Thyrocytes Triggers Important Changes in the miRNAs Content and the Populations of Extracellular Vesicles Released in Thyroid Tumor Microenvironment. Biomedicines 10 (4) (2022)
Christophe Vanderaa, Laurent Gatto
Replication of single-cell proteomics data reveals important computational challenges. Expert review of proteomics (2021)
Claire M Mulvey, Lisa M Breckels, Oliver M Crook, David J Sanders, Andre L R Ribeiro, Aikaterini Geladaki, Andy Christoforou, Nina Kočevar Britovšek, Tracey Hurrell, Michael J Deery, Laurent Gatto, Andrew Mark Smith, Kathryn S Lilley
Spatiotemporal proteomic profiling of the pro-inflammatory response to lipopolysaccharide in the THP-1 human leukaemia cell line. Nature communications 12 (1) (2021)
Edwin K Silverman, Harald H H W Schmidt, Eleni Anastasiadou, Lucia Altucci, Marco Angelini, Lina Badimón, Jean-Luc Balligand, Giuditta Benincasa, Giovambattista Capasso, Federica Conte, Antonella Di Costanzo, Lorenzo Farina, Giulia Fiscon, Laurent Gatto, Michele Gentili, Joseph Loscalzo, Cinzia Marchese, Claudio Napoli, Paola Paci, Manuela Petti, John Quackenbush, Paolo Tieri, Davide Viggiano, Gemma Vilahur, Kimberly Glass, Jan Baumbach
Molecular networks in Network Medicine: Development and applications. Wiley interdisciplinary reviews. Systems biology and medicine 12 (6) (2020)
Oliver M Crook, Aikaterini Geladaki, Daniel J H Nightingale, Owen L Vennard, Kathryn S Lilley, Laurent Gatto, Paul D W Kirk
A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection. PLoS computational biology 16 (11) (2020)
Hélène Pollet, Anne-Sophie Cloos, Amaury Stommen, Juliette Vanderroost, Louise Conrard, Adrien Paquot, Marine Ghodsi, Mélanie Carquin, Catherine Léonard, Manuel Guthmann, Maxime Lingurski, Christiane Vermylen, Theodore Killian, Laurent Gatto, Mark Rider, Sebastien Pyr Dit Ruys, Didier Vertommen, Miikka Vikkula, Pascal Brouillard, Patrick Van Der Smissen, Giulio G Muccioli, Donatienne Tyteca
Aberrant Membrane Composition and Biophysical Properties Impair Erythrocyte Morphology and Functionality in Elliptocytosis. Biomolecules 10 (8) (2020)
Laurent Gatto, Sebastian Gibb, Johannes Rainer
MSnbase, Efficient and Elegant R-Based Processing and Visualization of Raw Mass Spectrometry Data. Journal of proteome research 20 (1) (2020)
Laura L Baers, Lisa M Breckels, Lauren A Mills, Laurent Gatto, Michael J Deery, Tim J Stevens, Christopher J Howe, Kathryn S Lilley, David J Lea-Smith
Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism. Plant physiology 181 (4) (2019)
Aikaterini Geladaki, Nina Kočevar Britovšek, Lisa M Breckels, Tom S Smith, Owen L Vennard, Claire M Mulvey, Oliver M Crook, Laurent Gatto, Kathryn S Lilley
Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics. Nature communications 10 (1) (2019)
Oliver M Crook, Lisa M Breckels, Kathryn S Lilley, Paul D W Kirk, Laurent Gatto
A Bioconductor workflow for the Bayesian analysis of spatial proteomics. F1000Research 8 (2019)
Oliver M Crook, Laurent Gatto, Paul D W Kirk
Fast approximate inference for variable selection in Dirichlet process mixtures, with an application to pan-cancer proteomics. Statistical applications in genetics and molecular biology 18 (6) (2019)
Oliver M Crook, Claire M Mulvey, Paul D W Kirk, Kathryn S Lilley, Laurent Gatto
A Bayesian mixture modelling approach for spatial proteomics. PLoS computational biology 14 (11) (2018)
Claire M Mulvey, Lisa M Breckels, Aikaterini Geladaki, Nina Kočevar Britovšek, Daniel J H Nightingale, Andy Christoforou, Mohamed Elzek, Michael J Deery, Laurent Gatto, Kathryn S Lilley
Using hyperLOPIT to perform high-resolution mapping of the spatial proteome. Nature protocols 12 (6) (2017)
Peter J Thul, Lovisa Stenström, Mikaela Wiking, Diana Mahdessian, Aikaterini Geladaki, Hammou Ait Blal, Tove Alm, Anna Asplund, Lars Björk, Lisa M Breckels, Anna Bäckström, Frida Danielsson, Linn Fagerberg, Jenny Fall, Laurent Gatto, Christian Gnann, Sophia Hober, Martin Hjelmare, Fredric Johansson, Sunjae Lee, Cecilia Lindskog, Jan Mulder, Claire M Mulvey, Peter Nilsson, Per Oksvold, Johan Rockberg, Rutger Schutten, Jochen M Schwenk, Åsa Sivertsson, Evelina Sjöstedt, Marie Skogs, Charlotte Stadler, Devin P Sullivan, Hanna Tegel, Casper F Winsnes, Cheng Zhang, Martin Zwahlen, Adil Mardinglu, Frederik Pontén, Kalle von Feilitzen, Kathryn S Lilley, Mathias Uhlen, Emma Lundberg
A subcellular map of the human proteome. Science (New York, N.Y.) 356 (6340) (2017)
Lisa M Breckels, Claire M Mulvey, Kathryn S Lilley, Laurent Gatto
A Bioconductor workflow for processing and analysing spatial proteomics data. F1000Research (2016)
Yasset Perez-Riverol, Laurent Gatto, Rui Wang, Timo Sachsenberg, Julian Uszkoreit, Felipe da Veiga Leprevost, Christian Fufezan, Tobias Ternent, Stephen J Eglen, Daniel S Katz, Tom J Pollard, Alexander Konovalov, Robert M Flight, Kai Blin, Juan Antonio Vizcaino
Ten Simple Rules for Taking Advantage of Git and GitHub. PLoS computational biology 12 (7) (2016)
Lisa M Breckels, Claire M Mulvey, Kathryn S Lilley, Laurent Gatto
A Bioconductor workflow for processing and analysing spatial proteomics data. F1000Research 5 (2016)
Andy Christoforou, Claire M Mulvey, Lisa M Breckels, Aikaterini Geladaki, Tracey Hurrell, Penelope C Hayward, Thomas Naake, Laurent Gatto, Rosa Viner, Alfonso Martinez Arias, Kathryn S Lilley
A draft map of the mouse pluripotent stem cell spatial proteome. Nature communications 7 (2016)
Juan A Vizcaíno, Eric W Deutsch, Rui Wang, Attila Csordas, Florian Reisinger, Daniel Ríos, José A Dianes, Zhi Sun, Terry Farrah, Nuno Bandeira, Pierre-Alain Binz, Ioannis Xenarios, Martin Eisenacher, Gerhard Mayer, Laurent Gatto, Alex Campos, Robert J Chalkley, Hans-Joachim Kraus, Juan Pablo Albar, Salvador Martinez-Bartolomé, Rolf Apweiler, Gilbert S Omenn, Lennart Martens, Andrew R Jones, Henning Hermjakob
ProteomeXchange provides globally coordinated proteomics data submission and dissemination. Nature biotechnology 32 (3) (2015)
Wolfgang Huber, Vincent J Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S Carvalho, Hector Corrada Bravo, Sean Davis, Laurent Gatto, Thomas Girke, Raphael Gottardo, Florian Hahne, Kasper D Hansen, Rafael A Irizarry, Michael Lawrence, Michael I Love, James MacDonald, Valerie Obenchain, Andrzej K Oleś, Hervé Pagès, Alejandro Reyes, Paul Shannon, Gordon K Smyth, Dan Tenenbaum, Levi Waldron, Martin Morgan
Orchestrating high-throughput genomic analysis with Bioconductor. Nature methods 12 (2) (2015)
Nino Nikolovski, Pavel V Shliaha, Laurent Gatto, Paul Dupree, Kathryn S Lilley
Label-free protein quantification for plant Golgi protein localization and abundance. Plant physiology 166 (2) (2014)

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Publication Activity (10 Years)

Top Topics

Top Venues

Laurent Gatto