Peng Jin

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 52

Top Topics

Dna Methylation

Allergic Rhinitis

Top Venues

Nature biotechnology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Ruiming Han, Dongdong Zhu, Jichao Sha, Boning Zhao, Peng Jin, Cuida Meng
Decoding the role of DNA methylation in allergic diseases: from pathogenesis to therapy. Cell & bioscience 14 (1) (2024)
Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J Rowell, Caitlin Karniski, Zev Kronenberg, Matt C Danzi, Warren A Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D Bartley, Peng Jin, David L Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R Quinlan, Fritz J Sedlazeck, Michael A Eberle
Characterization and visualization of tandem repeats at genome scale. Nature biotechnology (2024)
Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J Rowell, Caitlin Karniski, Zev Kronenberg, Matt C Danzi, Warren A Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D Bartley, Peng Jin, David L Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R Quinlan, Fritz J Sedlazeck, Michael A Eberle
Characterization and visualization of tandem repeats at genome scale. Nature biotechnology (2024)
Ruiming Han, Dongdong Zhu, Jichao Sha, Boning Zhao, Peng Jin, Cuida Meng
Decoding the role of DNA methylation in allergic diseases: from pathogenesis to therapy. Cell & bioscience 14 (1) (2024)
Katherine R Westover, Peng Jin, Bing Yao
Bridging the gap: R-loop mediated genomic instability and its implications in neurological diseases. Epigenomics (2024)
Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J Rowell, Caitlin Karniski, Zev Kronenberg, Matt C Danzi, Warren A Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D Bartley, Peng Jin, David L Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R Quinlan, Fritz J Sedlazeck, Michael A Eberle
Characterization and visualization of tandem repeats at genome scale. Nature biotechnology (2024)
Katherine R Westover, Peng Jin, Bing Yao
Bridging the gap: R-loop mediated genomic instability and its implications in neurological diseases. Epigenomics (2024)
Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J Rowell, Caitlin Karniski, Zev Kronenberg, Matt C Danzi, Warren A Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D Bartley, Peng Jin, David L Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R Quinlan, Fritz J Sedlazeck, Michael A Eberle
Characterization and visualization of tandem repeats at genome scale. Nature biotechnology (2024)
Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J Rowell, Caitlin Karniski, Zev Kronenberg, Matt C Danzi, Warren A Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D Bartley, Peng Jin, David L Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R Quinlan, Fritz J Sedlazeck, Michael A Eberle
Characterization and visualization of tandem repeats at genome scale. Nature biotechnology (2024)
Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J Rowell, Caitlin Karniski, Zev Kronenberg, Matt C Danzi, Warren A Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D Bartley, Peng Jin, David L Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R Quinlan, Fritz J Sedlazeck, Michael A Eberle
Characterization and visualization of tandem repeats at genome scale. Nature biotechnology (2024)
Katherine R Westover, Peng Jin, Bing Yao
Bridging the gap: R-loop mediated genomic instability and its implications in neurological diseases. Epigenomics (2024)
Katherine R Westover, Peng Jin, Bing Yao
Bridging the gap: R-loop mediated genomic instability and its implications in neurological diseases. Epigenomics (2024)
Katherine R Westover, Peng Jin, Bing Yao
Bridging the gap: R-loop mediated genomic instability and its implications in neurological diseases. Epigenomics (2024)
Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J Rowell, Caitlin Karniski, Zev Kronenberg, Matt C Danzi, Warren A Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D Bartley, Peng Jin, David L Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R Quinlan, Fritz J Sedlazeck, Michael A Eberle
Characterization and visualization of tandem repeats at genome scale. Nature biotechnology (2024)
Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J Rowell, Caitlin Karniski, Zev Kronenberg, Matt C Danzi, Warren A Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D Bartley, Peng Jin, David L Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R Quinlan, Fritz J Sedlazeck, Michael A Eberle
Characterization and visualization of tandem repeats at genome scale. Nature biotechnology (2024)
Katherine R Westover, Peng Jin, Bing Yao
Bridging the gap: R-loop mediated genomic instability and its implications in neurological diseases. Epigenomics (2024)
Ruiming Han, Dongdong Zhu, Jichao Sha, Boning Zhao, Peng Jin, Cuida Meng
Decoding the role of DNA methylation in allergic diseases: from pathogenesis to therapy. Cell & bioscience 14 (1) (2024)
Giulia Cencelli, Laura Pacini, Anastasia De Luca, Ilenia Messia, Antonietta Gentile, Yunhee Kang, Veronica Nobile, Elisabetta Tabolacci, Peng Jin, Maria Giulia Farace, Claudia Bagni
Age-Dependent Dysregulation of APP in Neuronal and Skin Cells from Fragile X Individuals. Cells 12 (5) (2023)
Giulia Cencelli, Laura Pacini, Anastasia De Luca, Ilenia Messia, Antonietta Gentile, Yunhee Kang, Veronica Nobile, Elisabetta Tabolacci, Peng Jin, Maria Giulia Farace, Claudia Bagni
Age-Dependent Dysregulation of APP in Neuronal and Skin Cells from Fragile X Individuals. Cells 12 (5) (2023)
Hsiao-Lin V Wang, Austin M Veire, Tania F Gendron, Marla Gearing, Jonathan D Glass, Peng Jin, Victor G Corces, Zachary T McEachin
Single nucleus multiome analysis of the prefrontal cortex from C9orf72 ALS/FTD patients illuminates pathways affected during disease progression. bioRxiv : the preprint server for biology (2023)
Giulia Cencelli, Laura Pacini, Anastasia De Luca, Ilenia Messia, Antonietta Gentile, Yunhee Kang, Veronica Nobile, Elisabetta Tabolacci, Peng Jin, Maria Giulia Farace, Claudia Bagni
Age-Dependent Dysregulation of APP in Neuronal and Skin Cells from Fragile X Individuals. Cells 12 (5) (2023)
Giulia Cencelli, Laura Pacini, Anastasia De Luca, Ilenia Messia, Antonietta Gentile, Yunhee Kang, Veronica Nobile, Elisabetta Tabolacci, Peng Jin, Maria Giulia Farace, Claudia Bagni
Age-Dependent Dysregulation of APP in Neuronal and Skin Cells from Fragile X Individuals. Cells 12 (5) (2023)
Hsiao-Lin V Wang, Austin M Veire, Tania F Gendron, Marla Gearing, Jonathan D Glass, Peng Jin, Victor G Corces, Zachary T McEachin
Single nucleus multiome analysis of the prefrontal cortex from C9orf72 ALS/FTD patients illuminates pathways affected during disease progression. bioRxiv : the preprint server for biology (2023)
Flora Tassone, Dragana D Protic, Emily Graves Allen, Alison Dalton Archibald, Anna Baud, Ted W Brown, Dejan B Budimirovic, Jonathan Cohen, Brett Dufour, Rachel Eiges, Nicola Elvassore, Lidia V Gabis, Samantha J Grudzien, Deborah A Hall, David R Hessl, Abigail Hogan, Jessica Ezzell Hunter, Peng Jin, Poonnada Jiraanont, Jessica Klusek, R Frank Kooy, Claudine M Kraan, Cecilia Laterza, Andrea Lee, Karen Lipworth, Molly Losh, Danuta Z Loesch, Reymundo Lozano, Marsha R Mailick, Apostolos Manolopoulos, Veronica Martinez-Cerdeno, Yingratana McLennan, Robert M Miller, Federica Alice Maria Montanaro, Matthew W Mosconi, Sarah Nelson Potter, Melissa Raspa, Susan M Rivera, Katharine Shelly, Peter K Todd, Katarzyna Tutak, Jun Yi Wang, Anne Wheeler, Tri Indah Winarni, Marwa Zafarullah, Randi J Hagerman
Insight and Recommendations for Fragile X-Premutation-Associated Conditions from the Fifth International Conference on FMR1 Premutation. Cells 12 (18) (2023)
Yulin Jin, Kenong Su, Ha Eun Kong, Wenjing Ma, Zhiqin Wang, Yujing Li, Ronghua Li, Emily G Allen, Hao Wu, Peng Jin
Cell-type specific DNA methylome signatures reveal epigenetic mechanisms for neuronal diversity and neurodevelopmental disorder. Human molecular genetics (2022)
Cuida Meng, Lei Gu, Yujing Li, Ronghua Li, Yiqu Cao, Ziyi Li, Emily G Allen, Dongdong Zhu, Peng Jin
Ten-eleven translocation 2 modulates allergic inflammation by 5-hydroxymethylcytosine remodeling of immunologic pathways. Human molecular genetics 30 (21) (2022)
Ha Eun Kong, Junghwa Lim, Alexander Linsalata, Yunhee Kang, Indranil Malik, Emily G Allen, Yiqu Cao, Lisa Shubeck, Rich Johnston, Yanting Huang, Yanghong Gu, Xiangxue Guo, Michael E Zwick, Zhaohui Qin, Thomas S Wingo, Jorge Juncos, David L Nelson, Michael P Epstein, David J Cutler, Peter K Todd, Stephanie L Sherman, Stephen T Warren, Peng Jin
Identification of PSMB5 as a genetic modifier of fragile X-associated tremor/ataxia syndrome. Proceedings of the National Academy of Sciences of the United States of America 119 (22) (2022)
Qian Zhang, Qicheng Hu, Junjie Wang, Zhigang Miao, Ziyi Li, Yuwen Zhao, Bo Wan, Emily G Allen, Miao Sun, Peng Jin, Xingshun Xu
Stress modulates Ahi1-dependent nuclear localization of ten-eleven translocation protein 2. Human molecular genetics 30 (22) (2022)
Zhenxing Guo, Andrew M Shafik, Peng Jin, Hao Wu
Differential RNA methylation analysis for MeRIP-seq data under general experimental design. Bioinformatics (Oxford, England) 38 (20) (2022)
Yulin Jin, Emily G Allen, Peng Jin
Cell-free DNA methylation as a potential biomarker in brain disorders. Epigenomics 14 (7) (2022)
Azalea Lee, Jie Xu, Zhexing Wen, Peng Jin
Across Dimensions: Developing 2D and 3D Human iPSC-Based Models of Fragile X Syndrome. Cells 11 (11) (2022)
Yoon Hee Jung, Hsiao-Lin V Wang, Daniel Ruiz, Brianna J Bixler, Hannah Linsenbaum, Jian-Feng Xiang, Samantha Forestier, Andrew M Shafik, Peng Jin, Victor G Corces
Recruitment of CTCF to an Fto enhancer is responsible for transgenerational inheritance of BPA-induced obesity. Proceedings of the National Academy of Sciences of the United States of America 119 (50) (2022)
Andrew M Shafik, Emily G Allen, Peng Jin
Epitranscriptomic dynamics in brain development and disease. Molecular psychiatry 27 (9) (2022)
Andrew M Shafik, Huiqing Zhou, Junghwa Lim, Bryan Dickinson, Peng Jin
Dysregulated mitochondrial and cytosolic tRNA m1A methylation in Alzheimer's disease. Human molecular genetics 31 (10) (2022)
Shishi Min, Qian Xu, Lixia Qin, Yujing Li, Ziyi Li, Chao Chen, Hao Wu, Junhai Han, Xiongwei Zhu, Peng Jin, Bei-Sha Tang
Altered hydroxymethylome in the substantia nigra of Parkinson's disease. Human molecular genetics 31 (20) (2022)
Aliza P Wingo, Mengli Wang, Jiaqi Liu, Michael S Breen, Hyun-Sik Yang, Beisha Tang, Julie A Schneider, Nicholas T Seyfried, James J Lah, Allan L Levey, David A Bennett, Peng Jin, Philip Lawrence De Jager, Thomas S Wingo
Brain microRNAs are associated with variation in cognitive trajectory in advanced age. Translational psychiatry 12 (1) (2022)
Qiong Liu, Kailin Zhang, Yunhee Kang, Yangping Li, Penghui Deng, Yujing Li, Yun Tian, Qiying Sun, Yu Tang, Keqin Xu, Yao Zhou, Jun-Ling Wang, Jifeng Guo, Jia-Da Li, Kun Xia, Qingtuan Meng, Emily Graves Allen, Zhexing Wen, Ziyi Li, Jiang Hong, Lu Shen, Ranhui Duan, Bing Yao, Bei-Sha Tang, Peng Jin, Yongcheng Pan
Expression of expanded GGC repeats within NOTCH2NLC causes behavioral deficits and neurodegeneration in a mouse model of neuronal intranuclear inclusion disease. Science advances 8 (47) (2022)
Yunhee Kang, Ying Zhou, Yujing Li, Yanfei Han, Jie Xu, Weibo Niu, Ziyi Li, Shiying Liu, Hao Feng, Wen Huang, Ranhui Duan, Tianmin Xu, Nisha Raj, Feiran Zhang, Juan Dou, Chongchong Xu, Hao Wu, Gary J Bassell, Stephen T Warren, Emily G Allen, Peng Jin, Zhexing Wen
A human forebrain organoid model of fragile X syndrome exhibits altered neurogenesis and highlights new treatment strategies. Nature neuroscience 24 (10) (2021)
Andrew M Shafik, Feiran Zhang, Zhenxing Guo, Qing Dai, Kinga Pajdzik, Yangping Li, Yunhee Kang, Bing Yao, Hao Wu, Chuan He, Emily G Allen, Ranhui Duan, Peng Jin
N6-methyladenosine dynamics in neurodevelopment and aging, and its potential role in Alzheimer's disease. Genome biology 22 (1) (2021)
Guang Song, Guohua Wang, Ximei Luo, Ying Cheng, Qifeng Song, Jun Wan, Cedric Moore, Hongjun Song, Peng Jin, Jiang Qian, Heng Zhu
An all-to-all approach to the identification of sequence-specific readers for epigenetic DNA modifications on cytosine. Nature communications 12 (1) (2021)
Yanting Huang, Xiaobo Sun, Huige Jiang, Shaojun Yu, Chloe Robins, Matthew J Armstrong, Ronghua Li, Zhen Mei, Xiaochuan Shi, Ekaterina Sergeevna Gerasimov, Philip Lawrence De Jager, David A Bennett, Aliza P Wingo, Peng Jin, Thomas S Wingo, Zhaohui S Qin
A machine learning approach to brain epigenetic analysis reveals kinases associated with Alzheimer's disease. Nature communications 12 (1) (2021)
Cyong-Ru Jhan, Roshan Satange, Shun-Ching Wang, Jing-Yi Zeng, Yih-Chern Horng, Peng Jin, Stephen Neidle, Ming-Hon Hou
Targeting the ALS/FTD-associated A-DNA kink with anthracene-based metal complex causes DNA backbone straightening and groove contraction. Nucleic acids research 49 (16) (2021)
Guang Song, Guohua Wang, Ximei Luo, Ying Cheng, Qifeng Song, Jun Wan, Cedric Moore, Hongjun Song, Peng Jin, Jiang Qian, Heng Zhu
Author Correction: An all-to-all approach to the identification of sequence-specific readers for epigenetic DNA modifications on cytosine. Nature communications 12 (1) (2021)
Hyerim Kim, Yunhee Kang, Yujing Li, Li Chen, Li Lin, Nicholas D Johnson, Dan Zhu, M Hope Robinson, Leon McSwain, Benjamin G Barwick, Xianrui Yuan, Xinbin Liao, Jie Zhao, Zhiping Zhang, Qiang Shu, Jianjun Chen, Emily G Allen, Anna M Kenney, Robert C Castellino, Erwin G Van Meir, Karen N Conneely, Paula M Vertino, Peng Jin, Jian Li
Ten-eleven translocation protein 1 modulates medulloblastoma progression. Genome biology 22 (1) (2021)
Peng Yu, Jin Li, Su-Ping Deng, Feiran Zhang, Petar N Grozdanov, Eunice W M Chin, Sheree D Martin, Laurent Vergnes, M Saharul Islam, Deqiang Sun, Janine M LaSalle, Sean L McGee, Eyleen L K Goh, Clinton C MacDonald, Peng Jin
Integrated analysis of a compendium of RNA-Seq datasets for splicing factors. Scientific data 7 (1) (2020)
Peng Yu, Jin Li, Su-Ping Deng, Feiran Zhang, Petar N Grozdanov, Eunice W M Chin, Sheree D Martin, Laurent Vergnes, M Saharul Islam, Deqiang Sun, Janine M LaSalle, Sean L McGee, Eyleen L K Goh, Clinton C MacDonald, Peng Jin
Publisher Correction: Integrated analysis of a compendium of RNA-Seq datasets for splicing factors. Scientific data 7 (1) (2020)
Nicholas D Johnson, Luoxiu Huang, Ronghua Li, Yun Li, Yuchen Yang, Hye Rim Kim, Crystal Grant, Hao Wu, Eric A Whitsel, Douglas P Kiel, Andrea A Baccarelli, Peng Jin, Joanne M Murabito, Karen N Conneely
Age-related DNA hydroxymethylation is enriched for gene expression and immune system processes in human peripheral blood. Epigenetics 15 (3) (2019)
Ying Cheng, Zhi-Meng Wang, Weiqi Tan, Xiaona Wang, Yujing Li, Bing Bai, Yuxin Li, Shuang-Feng Zhang, Hai-Liang Yan, Zuo-Lun Chen, Chang-Mei Liu, Ting-Wei Mi, Shuting Xia, Zikai Zhou, An Liu, Gang-Bin Tang, Cong Liu, Zhi-Jie Dai, Ying-Ying Wang, Hong Wang, Xusheng Wang, Yunhee Kang, Li Lin, Zhenping Chen, Nina Xie, Qinmiao Sun, Wei Xie, Junmin Peng, Dahua Chen, Zhao-Qian Teng, Peng Jin
Partial loss of psychiatric risk gene Mir137 in mice causes repetitive behavior and impairs sociability and learning via increased Pde10a. Nature neuroscience 21 (12) (2018)
Feng Pan, Thomas S Wingo, Zhigang Zhao, Rui Gao, Hideki Makishima, Guangbo Qu, Li Lin, Miao Yu, Janice R Ortega, Jiapeng Wang, Aziz Nazha, Li Chen, Bing Yao, Can Liu, Shi Chen, Ophelia Weeks, Hongyu Ni, Brittany Lynn Phillips, Suming Huang, Jianlong Wang, Chuan He, Guo-Min Li, Tomas Radivoyevitch, Iannis Aifantis, Jaroslaw P Maciejewski, Feng-Chun Yang, Peng Jin, Mingjiang Xu
Tet2 loss leads to hypermutagenicity in haematopoietic stem/progenitor cells. Nature communications 8 (2017)
Bing Yao, Ying Cheng, Zhiqin Wang, Yujing Li, Li Chen, Luoxiu Huang, Wenxin Zhang, Dahua Chen, Hao Wu, Beisha Tang, Peng Jin
DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress. Nature communications 8 (1) (2017)
Yohan Oh, Feiran Zhang, Yaqing Wang, Emily M Lee, In Young Choi, Hotae Lim, Fahimeh Mirakhori, Ronghua Li, Luoxiu Huang, Tianlei Xu, Hao Wu, Cui Li, Cheng-Feng Qin, Zhexing Wen, Qing-Feng Wu, Hengli Tang, Zhiheng Xu, Peng Jin, Hongjun Song, Guo-Li Ming, Gabsang Lee
Zika virus directly infects peripheral neurons and induces cell death. Nature neuroscience 20 (9) (2017)
Xuekun Li, Bing Yao, Li Chen, Yunhee Kang, Yujing Li, Ying Cheng, Liping Li, Li Lin, Zhiqin Wang, Mengli Wang, Feng Pan, Qing Dai, Wei Zhang, Hao Wu, Qiang Shu, Zhaohui S Qin, Chuan He, Mingjiang Xu, Peng Jin
Ten-eleven translocation 2 interacts with forkhead box O3 and regulates adult neurogenesis. Nature communications 8 (2017)