Peter A Sims (Peter Sims, P A Sims)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 30

Top Venues

bioRxiv : the preprint server for biology

Research square

Science immunology

Genome medicine

Columbia University Medical Center

Harvard University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Columbia University Medical Center

United States

Assistant Professor :: Department of Systems Biology

Education History

Harvard University

United States

PHD :: Department of Chemistry and Chemical Biology

University of California San Diego

United States

BSC :: Department of Chemistry and Biochemistry

Publications

Verena Haage, John F Tuddenham, Natacha Comandante-Lou, Alex R Bautista, Anna S Monzel, Rebecca Chiu, Masashi Fujita, Frankie G Garcia, Prabesh Bhattarai, Ronak Patel, Alice Buonfiglioli, Juan Idiarte, Mathieu Herman, Alison Rinderspacher, Angeliki Mela, Wenting Zhao, Michael G Argenziano, Julia L Furnari, Matei A Banu, Donald W Landry, Jeffrey N Bruce, Peter D Canoll, Ya Zhang, Tal Nuriel, Caghan Kizil, Andrew A Sproul, Lotje D de Witte, Peter A Sims, Vilas Menon, Martin Picard, Philip Lawrence De Jager
A pharmacological toolkit for human microglia identifies Topoisomerase I inhibitors as immunomodulators for Alzheimer's disease. bioRxiv : the preprint server for biology (2024)
Matei A Banu, Athanassios Dovas, Michael G Argenziano, Wenting Zhao, Colin P Sperring, Henar Cuervo Grajal, Zhouzerui Liu, Dominique Mo Higgins, Misha Amini, Brianna Pereira, Ling F Ye, Aayushi Mahajan, Nelson Humala, Julia L Furnari, Pavan S Upadhyayula, Fereshteh Zandkarimi, Trang Thi Thu Nguyen, Damian Teasley, Peter B Wu, Li Hai, Charles Karan, Tyrone Dowdy, Aida Razavilar, Markus D Siegelin, Jan Kitajewski, Mioara Larion, Jeffrey N Bruce, Brent R Stockwell, Peter A Sims, Peter D Canoll
A cell state-specific metabolic vulnerability to GPX4-dependent ferroptosis in glioblastoma. The EMBO journal (2024)
Joshua I Gray, Daniel P Caron, Steven B Wells, Rebecca Guyer, Peter A Szabo, Daniel B Rainbow, Can Ergen, Ksenia Rybkina, Marissa C Bradley, Rei Matsumoto, Kalpana Pethe, Masaru Kubota, Sarah A Teichmann, Joanne Louise Jones, Nir Yosef, Mark A Atkinson, Maigan A Brusko, Todd M Brusko, Thomas J Connors, Peter A Sims, Donna L Farber
Human γδ T cells in diverse tissues exhibit site-specific maturation dynamics across the life span. Science immunology 9 (96) (2024)
Alexander R Goldberg, Athanassios Dovas, Daniela Torres, Sohani Das Sharma, Angeliki Mela, Edward M Merricks, Markel Olabarria, Leila Abrishami Shokooh, Hanzhi T Zhao, Corina Kotidis, Peter Calvaresi, Ashwin Viswanathan, Matei A Banu, Aida Razavilar, Tejaswi D Sudhakar, Ankita Saxena, Cole Chokran, Nelson Humala, Aayushi Mahajan, Weihao Xu, Jordan B Metz, Cady Chen, Eric A Bushong, Daniela Boassa, Mark H Ellisman, Elizabeth M C Hillman, Guy M McKhann, Brian J A Gill, Steven S Rosenfeld, Catherine A Schevon, Jeffrey N Bruce, Peter A Sims, Darcy S Peterka, Peter D Canoll
Glioma-Induced Alterations in Excitatory Neurons are Reversed by mTOR Inhibition. bioRxiv : the preprint server for biology (2024)
Matei A Banu, Athanassios Dovas, Michael G Argenziano, Wenting Zhao, Colin P Sperring, Henar Cuervo Grajal, Zhouzerui Liu, Dominique Mo Higgins, Misha Amini, Brianna Pereira, Ling F Ye, Aayushi Mahajan, Nelson Humala, Julia L Furnari, Pavan S Upadhyayula, Fereshteh Zandkarimi, Trang Thi Thu Nguyen, Damian Teasley, Peter B Wu, Li Hai, Charles Karan, Tyrone Dowdy, Aida Razavilar, Markus D Siegelin, Jan Kitajewski, Mioara Larion, Jeffrey N Bruce, Brent R Stockwell, Peter A Sims, Peter D Canoll
A cell state-specific metabolic vulnerability to GPX4-dependent ferroptosis in glioblastoma. The EMBO journal (2024)
Alexander R Goldberg, Athanassios Dovas, Daniela Torres, Sohani Das Sharma, Angeliki Mela, Edward M Merricks, Markel Olabarria, Leila Abrishami Shokooh, Hanzhi T Zhao, Corina Kotidis, Peter Calvaresi, Ashwin Viswanathan, Matei A Banu, Aida Razavilar, Tejaswi D Sudhakar, Ankita Saxena, Cole Chokran, Nelson Humala, Aayushi Mahajan, Weihao Xu, Jordan B Metz, Cady Chen, Eric A Bushong, Daniela Boassa, Mark H Ellisman, Elizabeth M C Hillman, Guy M McKhann, Brian J A Gill, Steven S Rosenfeld, Catherine A Schevon, Jeffrey N Bruce, Peter A Sims, Darcy S Peterka, Peter D Canoll
Glioma-Induced Alterations in Excitatory Neurons are Reversed by mTOR Inhibition. bioRxiv : the preprint server for biology (2024)
Verena Haage, John F Tuddenham, Natacha Comandante-Lou, Alex R Bautista, Anna S Monzel, Rebecca Chiu, Masashi Fujita, Frankie G Garcia, Prabesh Bhattarai, Ronak Patel, Alice Buonfiglioli, Juan Idiarte, Mathieu Herman, Alison Rinderspacher, Angeliki Mela, Wenting Zhao, Michael G Argenziano, Julia L Furnari, Matei A Banu, Donald W Landry, Jeffrey N Bruce, Peter D Canoll, Ya Zhang, Tal Nuriel, Caghan Kizil, Andrew A Sproul, Lotje D de Witte, Peter A Sims, Vilas Menon, Martin Picard, Philip Lawrence De Jager
A pharmacological toolkit for human microglia identifies Topoisomerase I inhibitors as immunomodulators for Alzheimer's disease. bioRxiv : the preprint server for biology (2024)
Raphaël Gottardo, Ye Zheng, Daniel P Caron, Ju Kim, Seong Jun, Yuan Tian, Florian Mair, Kenneth Stuart, Peter A Sims
ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets. Research square (2024)
Ye Zheng, Daniel P Caron, Ju Yeong Kim, Seong-Hwan Jun, Yuan Tian, Florian Mair, Kenneth D Stuart, Peter A Sims, Raphaël Gottardo
ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets. Research square (2024)
Raphaël Gottardo, Ye Zheng, Daniel P Caron, Ju Kim, Seong Jun, Yuan Tian, Florian Mair, Kenneth Stuart, Peter A Sims
ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets. Research square (2024)
Alexander R Goldberg, Athanassios Dovas, Daniela Torres, Sohani Das Sharma, Angeliki Mela, Edward M Merricks, Markel Olabarria, Leila Abrishami Shokooh, Hanzhi T Zhao, Corina Kotidis, Peter Calvaresi, Ashwin Viswanathan, Matei A Banu, Aida Razavilar, Tejaswi D Sudhakar, Ankita Saxena, Cole Chokran, Nelson Humala, Aayushi Mahajan, Weihao Xu, Jordan B Metz, Cady Chen, Eric A Bushong, Daniela Boassa, Mark H Ellisman, Elizabeth M C Hillman, Guy M McKhann, Brian J A Gill, Steven S Rosenfeld, Catherine A Schevon, Jeffrey N Bruce, Peter A Sims, Darcy S Peterka, Peter D Canoll
Glioma-Induced Alterations in Excitatory Neurons are Reversed by mTOR Inhibition. bioRxiv : the preprint server for biology (2024)
Prabhjot S Mundi, Filemon Dela Cruz, Adina Grunn, Daniel Diolaiti, Audrey Mauguen, Allison R Rainey, Kristina Guillan, Armaan Siddiquee, Daoqi You, Ronald Realubit, Charles Karan, Michael V Ortiz, Eugene F Douglass, Melissa K Accordino, Suzanne Mistretta, Frances L Brogan, Jeffrey N Bruce, Cristina I Caescu, Richard D Carvajal, Katherine D Crew, Guarionex Decastro, Mark Heaney, Brian S Henick, Dawn L Hershman, June Y Hou, Fabio M Iwamoto, Joseph G Jurcic, Ravi P Kiran, Michael D Kluger, Teri Kreisl, Nicole Lamanna, Andrew B Lassman, Emerson A Lim, Gulam A Manji, Guy M McKhann, James M McKiernan, Alfred I Neugut, Kenneth P Olive, Todd Rosenblat, Gary K Schwartz, Catherine A Shu, Michael B Sisti, Ana I Tergas, Reena M Vattakalam, Mary R Welch, Sven Wenske, Jason D Wright, Peter Canoll, Hanina Hibshoosh, Kevin M Kalinsky, Mahalaxmi Aburi, Peter A Sims, Mariano J Alvarez, Andrew L Kung, Andrea Califano
A transcriptome-based precision oncology platform for patient-therapy alignment in a diverse set of treatment resistant malignancies. Cancer discovery (2023)
Matei A Banu, Athanassios Dovas, Michael G Argenziano, Wenting Zhao, Henar Cuervo Grajal, Dominique M O Higgins, Colin P Sperring, Brianna Pereira, Ling F Ye, Aayushi Mahajan, Nelson Humala, Julia L Furnari, Pavan S Upadhyayula, Fereshteh Zandkarimi, Trang T T Nguyen, Peter B Wu, Li Hai, Charles Karan, Aida Razavilar, Markus D Siegelin, Jan Kitajewski, Jeffrey N Bruce, Brent R Stockwell, Peter A Sims, Peter D Canoll
A cell state specific metabolic vulnerability to GPX4-dependent ferroptosis in glioblastoma. bioRxiv : the preprint server for biology (2023)
Matei A Banu, Athanassios Dovas, Michael G Argenziano, Wenting Zhao, Henar Cuervo Grajal, Dominique M O Higgins, Colin P Sperring, Brianna Pereira, Ling F Ye, Aayushi Mahajan, Nelson Humala, Julia L Furnari, Pavan S Upadhyayula, Fereshteh Zandkarimi, Trang T T Nguyen, Peter B Wu, Li Hai, Charles Karan, Aida Razavilar, Markus D Siegelin, Jan Kitajewski, Jeffrey N Bruce, Brent R Stockwell, Peter A Sims, Peter D Canoll
A cell state specific metabolic vulnerability to GPX4-dependent ferroptosis in glioblastoma. bioRxiv : the preprint server for biology (2023)
Daniel P Caron, William L Specht, David Chen, Steven B Wells, Peter A Szabo, Isaac J Jensen, Donna L Farber, Peter A Sims
Multimodal hierarchical classification of CITE-seq data delineates immune cell states across lineages and tissues. bioRxiv : the preprint server for biology (2023)
Mark E Snyder, Kaveh Moghbeli, Anna Bondonese, Andrew Craig, Iulia D Popescu, Li Fan, Tracy Tabib, Robert A Lafyatis, Kong Chen, Humberto E Trejo Bittar, Elizabeth Lendermon, Joseph M Pilewski, Bruce Johnson, Silpa Kilaru, Yingze Zhang, Pablo G Sanchez, Jonathan K Alder, Peter A Sims, John F McDyer
Modulation of tissue resident memory T cells by glucocorticoids after acute cellular rejection in lung transplantation. The Journal of experimental medicine 219 (4) (2022)
Benjamin D Hobson, Se Joon Choi, Eugene V Mosharov, Rajesh Kumar Soni, David L Sulzer, Peter A Sims
Subcellular proteomics of dopamine neurons in the mouse brain. eLife 11 (2022)
Tae Jin Yun, Suzu Igarashi, Haoquan Zhao, Oriana A Perez, Marcus R Pereira, Emmanuel Zorn, Yufeng Shen, Felicia D Goodrum, Adeeb H Rahman, Peter A Sims, Donna L Farber, Boris Reizis
Human plasmacytoid dendritic cells mount a distinct antiviral response to virus-infected cells. Science immunology 6 (58) (2022)
Cecilia Domínguez Conde, Chuan Xu, Lorna B Jarvis, Daniel B Rainbow, Steven B Wells, Tomas Gomes, S K Howlett, O Suchanek, Krzysztof Polański, Hamish W King, Lira Mamanova, Ni Huang, Peter A Szabo, Laura Richardson, Liam Bolt, Eirini S Fasouli, Krishnaa T A Mahbubani, Martin Prete, Elizabeth Tuck, N Richoz, Zewen Kelvin Tuong, L Campos, Hani S Mousa, Edward J Needham, S Pritchard, Tong Li, Rasa Elmentaite, Jong-Eun Park, E Rahmani, David Chen, David K Menon, O A Bayraktar, Louisa Katherine James, Kerstin B Meyer, Nir Yosef, Menna R Clatworthy, Peter A Sims, Donna L Farber, Kourosh Saeb Parsy, Joanne Louise Jones, Sarah A Teichmann
Cross-tissue immune cell analysis reveals tissue-specific features in humans. Science (New York, N.Y.) 376 (6594) (2022)
N Sumru Bayin, Y Eugene Chen, Daniel N Stephen, Zhimin Lao, Peter A Sims, Alexandra L Joyner
Injury-induced ASCL1 expression orchestrates a transitory cell state required for repair of the neonatal cerebellum. Science advances 7 (50) (2021)
Wenting Zhao, Athanassios Dovas, Eleonora Francesca Spinazzi, Hanna Mendes Levitin, Matei Alexandru Banu, Pavan Upadhyayula, Tejaswi Sudhakar, Tamara Marie, Marc L Otten, Michael B Sisti, Jeffrey N Bruce, Peter Canoll, Peter A Sims
Deconvolution of cell type-specific drug responses in human tumor tissue with single-cell RNA-seq. Genome medicine 13 (1) (2021)
Mark E Snyder, Michael O Finlayson, Thomas J Connors, Pranay Dogra, Takashi Senda, Erin Bush, Dustin Carpenter, Charles C Marboe, Luke J Benvenuto, Lori Shah, Hilary Robbins, Jaime Lynn Hook, Megan Sykes, Frank D'Ovidio, Matthew Bacchetta, Joshua R Sonett, David J Lederer, Selim Arcasoy, Peter A Sims, Donna L Farber
Generation and persistence of human tissue-resident memory T cells in lung transplantation. Science immunology 4 (33) (2020)
Benjamin D Hobson, Linghao Kong, Erik W Hartwick, Ruben L Gonzalez, Peter A Sims
Elongation inhibitors do not prevent the release of puromycylated nascent polypeptide chains from ribosomes. eLife 9 (2020)
Peter A Szabo, Hanna Mendes Levitin, Michelle Miron, Mark E Snyder, Takashi Senda, Jinzhou Yuan, Yim Ling Cheng, Erin C Bush, Pranay Dogra, Puspa Thapa, Donna L Farber, Peter A Sims
Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease. Nature communications 10 (1) (2019)
Jinzhou Yuan, Peter A Sims
SPOTs fill a major gap in RNA quantification. Nature methods 14 (12) (2019)
Hanna Mendes Levitin, Jinzhou Yuan, Yim Ling Cheng, Francisco Jr Ruiz, Erin C Bush, Jeffrey N Bruce, Peter D Canoll, Antonio Iavarone, Anna Lasorella, David M Blei, Peter A Sims
De novo gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization. Molecular systems biology 15 (2) (2019)
Bohao Liu, Benjamin W Lee, Koki Nakanishi, Aranzazu Villasante, Rebecca Williamson, Jordan Metz, Jinho Kim, Mariko Kanai, Lynn Bi, Kristy Brown, Gilbert Di Paolo, Shunichi Homma, Peter A Sims, Veli K Topkara, Gordana Vunjak-Novakovic
Cardiac recovery via extended cell-free delivery of extracellular vesicles secreted by cardiomyocytes derived from induced pluripotent stem cells. Nature biomedical engineering 2 (5) (2018)
Jinzhou Yuan, Jenny Sheng, Peter A Sims
SCOPE-Seq: a scalable technology for linking live cell imaging and single-cell RNA sequencing. Genome biology 19 (1) (2018)
Jinzhou Yuan, Hanna Mendes Levitin, Veronique Frattini, Erin C Bush, Deborah M Boyett, Jorge Samanamud, Michele Ceccarelli, Athanassios Dovas, George Zanazzi, Peter Canoll, Jeffrey N Bruce, Anna Lasorella, Antonio Iavarone, Peter A Sims
Single-cell transcriptome analysis of lineage diversity in high-grade glioma. Genome medicine 10 (1) (2018)
Erin C Bush, Forest Ray, Mariano J Alvarez, Ronald Realubit, Hai Li, Charles Karan, Andrea Califano, Peter A Sims
PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens. Nature communications 8 (1) (2017)

Peter A Sims.css-eqlu8i{font-size:small;padding-left:4px;} (Peter Sims, P A Sims)

Publication Activity (10 Years)

Top Topics

Top Venues

Peter A Sims (Peter Sims, P A Sims)