Raphaël Gottardo (Raphael Gottardo, R Gottardo)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 47

Top Topics

Machine Learning

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Blood cancer discovery

This page only lists publications with an associated author ORCID identifier.

Publications

William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods 21 (7) (2024)
Mathilde Foglierini, Pauline Nortier, Rachel Schelling, Rahel R Winiger, Philippe Jacquet, Sijy O'Dell, Davide Demurtas, Maxmillian Mpina, Omar Lweno, Yannick D Muller, Constantinos Petrovas, Claudia A Daubenberger, Matthieu Perreau, Nicole A Doria-Rose, Raphaël Gottardo, Laurent Perez
RAIN: machine learning-based identification for HIV-1 bNAbs. Nature communications 15 (1) (2024)
George Mo, Sang-Yun Lee, David G Coffey, Valentin Voillet, Ilan R Kirsch, Raphaël Gottardo, Kimberly S Smythe, Cecilia C S Yeung, Adam Greenbaum, Damian J Green, David G Maloney, Brian G Till
Long-term Remissions Following CD20-directed Chimeric Antigen Receptor Adoptive T cell Therapy. Blood cancer discovery (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods (2024)
David Barras, Eleonora Ghisoni, Johanna Chiffelle, Angela Orcurto, Julien Dagher, Noémie Fahr, Fabrizio Benedetti, Isaac Crespo, Alizée J Grimm, Matteo Morotti, Stefan Zimmermann, Rafael Duran, Martina Imbimbo, Maria Ochoa de Olza, Blanca Navarro, Krisztian Homicsko, Sara Bobisse, Danny Labes, Zoe Tsourti, Charitini Andriakopoulou, Fernanda Herrera, Rémy Pétremand, Reinhard Dummer, Gregoire Berthod, Anne I Kraemer, Florian Huber, Jonathan Thevenet, Michal Bassani-Sternberg, Niklaus Schaefer, John O Prior, Maurice Matter, Aedo Lopez Veronica, Clarisse Dromain, Jesus Corria-Osorio, Stéphanie R Tissot, Lana Elias Kandalaft, Raphaël Gottardo, Mikaël J Pittet, Christine Sempoux, Olivier Michielin, Urania Dafni, Lionel Trueb, Alexandre Harari, Denarda Dangaj Laniti, Sergio A Quezada
Response to tumor-infiltrating lymphocyte adoptive therapy is associated with preexisting CD8 + T-myeloid cell networks in melanoma. Science immunology 9 (92) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
George Mo, Sang-Yun Lee, David G Coffey, Valentin Voillet, Ilan R Kirsch, Raphaël Gottardo, Kimberly S Smythe, Cecilia C S Yeung, Adam Greenbaum, Damian J Green, David G Maloney, Brian G Till
Long-term Remissions Following CD20-Directed Chimeric Antigen Receptor-Adoptive T-cell Therapy. Blood cancer discovery 5 (4) (2024)
David Barras, Eleonora Ghisoni, Johanna Chiffelle, Angela Orcurto, Julien Dagher, Noémie Fahr, Fabrizio Benedetti, Isaac Crespo, Alizée J Grimm, Matteo Morotti, Stefan Zimmermann, Rafael Duran, Martina Imbimbo, Maria Ochoa de Olza, Blanca Navarro, Krisztian Homicsko, Sara Bobisse, Danny Labes, Zoe Tsourti, Charitini Andriakopoulou, Fernanda Herrera, Rémy Pétremand, Reinhard Dummer, Gregoire Berthod, Anne I Kraemer, Florian Huber, Jonathan Thevenet, Michal Bassani-Sternberg, Niklaus Schaefer, John O Prior, Maurice Matter, Aedo Lopez Veronica, Clarisse Dromain, Jesus Corria-Osorio, Stéphanie R Tissot, Lana Elias Kandalaft, Raphaël Gottardo, Mikaël J Pittet, Christine Sempoux, Olivier Michielin, Urania Dafni, Lionel Trueb, Alexandre Harari, Denarda Dangaj Laniti, Sergio A Quezada
Response to tumor-infiltrating lymphocyte adoptive therapy is associated with preexisting CD8 + T-myeloid cell networks in melanoma. Science immunology 9 (92) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods (2024)
David Barras, Eleonora Ghisoni, Johanna Chiffelle, Angela Orcurto, Julien Dagher, Noémie Fahr, Fabrizio Benedetti, Isaac Crespo, Alizée J Grimm, Matteo Morotti, Stefan Zimmermann, Rafael Duran, Martina Imbimbo, Maria Ochoa de Olza, Blanca Navarro, Krisztian Homicsko, Sara Bobisse, Danny Labes, Zoe Tsourti, Charitini Andriakopoulou, Fernanda Herrera, Rémy Pétremand, Reinhard Dummer, Gregoire Berthod, Anne I Kraemer, Florian Huber, Jonathan Thevenet, Michal Bassani-Sternberg, Niklaus Schaefer, John O Prior, Maurice Matter, Aedo Lopez Veronica, Clarisse Dromain, Jesus Corria-Osorio, Stéphanie R Tissot, Lana Elias Kandalaft, Raphaël Gottardo, Mikaël J Pittet, Christine Sempoux, Olivier Michielin, Urania Dafni, Lionel Trueb, Alexandre Harari, Denarda Dangaj Laniti, Sergio A Quezada
Response to tumor-infiltrating lymphocyte adoptive therapy is associated with preexisting CD8 + T-myeloid cell networks in melanoma. Science immunology 9 (92) (2024)
Mathilde Foglierini, Pauline Nortier, Rachel Schelling, Rahel R Winiger, Philippe Jacquet, Sijy O'Dell, Davide Demurtas, Maxmillian Mpina, Omar Lweno, Yannick D Muller, Constantinos Petrovas, Claudia A Daubenberger, Matthieu Perreau, Nicole A Doria-Rose, Raphaël Gottardo, Laurent Perez
RAIN: machine learning-based identification for HIV-1 bNAbs. Nature communications 15 (1) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods 21 (7) (2024)
Mathilde Foglierini, Pauline Nortier, Rachel Schelling, Rahel R Winiger, Philippe Jacquet, Sijy O'Dell, Davide Demurtas, Maxmillian Mpina, Omar Lweno, Yannick D Muller, Constantinos Petrovas, Claudia A Daubenberger, Matthieu Perreau, Nicole A Doria-Rose, Raphaël Gottardo, Laurent Perez
RAIN: machine learning-based identification for HIV-1 bNAbs. Nature communications 15 (1) (2024)
Mathilde Foglierini, Pauline Nortier, Rachel Schelling, Rahel R Winiger, Philippe Jacquet, Sijy O'Dell, Davide Demurtas, Maxmillian Mpina, Omar Lweno, Yannick D Muller, Constantinos Petrovas, Claudia A Daubenberger, Matthieu Perreau, Nicole A Doria-Rose, Raphaël Gottardo, Laurent Perez
RAIN: machine learning-based identification for HIV-1 bNAbs. Nature communications 15 (1) (2024)
George Mo, Sang-Yun Lee, David G Coffey, Valentin Voillet, Ilan R Kirsch, Raphaël Gottardo, Kimberly S Smythe, Cecilia C S Yeung, Adam Greenbaum, Damian J Green, David G Maloney, Brian G Till
Long-term Remissions Following CD20-directed Chimeric Antigen Receptor Adoptive T cell Therapy. Blood cancer discovery (2024)
Raphaël Gottardo, Ye Zheng, Daniel P Caron, Ju Kim, Seong Jun, Yuan Tian, Florian Mair, Kenneth Stuart, Peter A Sims
ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets. Research square (2024)
George Mo, Sang-Yun Lee, David G Coffey, Valentin Voillet, Ilan R Kirsch, Raphaël Gottardo, Kimberly S Smythe, Cecilia C S Yeung, Adam Greenbaum, Damian J Green, David G Maloney, Brian G Till
Long-term Remissions Following CD20-Directed Chimeric Antigen Receptor-Adoptive T-cell Therapy. Blood cancer discovery 5 (4) (2024)
Ye Zheng, Daniel P Caron, Ju Yeong Kim, Seong-Hwan Jun, Yuan Tian, Florian Mair, Kenneth D Stuart, Peter A Sims, Raphaël Gottardo
ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets. Research square (2024)
Raphaël Gottardo, Ye Zheng, Daniel P Caron, Ju Kim, Seong Jun, Yuan Tian, Florian Mair, Kenneth Stuart, Peter A Sims
ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets. Research square (2024)
Mathilde Foglierini, Pauline Nortier, Rachel Schelling, Rahel R Winiger, Philippe Jacquet, Sijy O'Dell, Davide Demurtas, Maxmillian Mpina, Omar Lweno, Yannick D Muller, Constantinos Petrovas, Claudia A Daubenberger, Matthieu Perreau, Nicole A Doria-Rose, Raphaël Gottardo, Laurent Perez
RAIN: machine learning-based identification for HIV-1 bNAbs. Nature communications 15 (1) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
George Mo, Sang-Yun Lee, David G Coffey, Valentin Voillet, Ilan R Kirsch, Raphaël Gottardo, Kimberly S Smythe, Cecilia C S Yeung, Adam Greenbaum, Damian J Green, David G Maloney, Brian G Till
Long-term Remissions Following CD20-Directed Chimeric Antigen Receptor-Adoptive T-cell Therapy. Blood cancer discovery 5 (4) (2024)
Valerie P O'Brien, Yuqi Kang, Meera K Shenoy, Greg Finak, William C Young, Julien Dubrulle, Lisa K Koch, Armando E Rodriguez Martinez, Jeffery Williams, Elizabeth Donato, Surinder Kumar Batra, Cecilia C S Yeung, William M Grady, Meghan A Koch, Raphaël Gottardo, Nina R Salama
Single-cell Profiling Uncovers a Muc4 -Expressing Metaplastic Gastric Cell Type Sustained by Helicobacter pylori -driven Inflammation. Cancer research communications 3 (9) (2023)
Thomas Hagan, Bram Gerritsen, Lewis E Tomalin, Slim Fourati, Matthew P Mulè, Daniel G Chawla, Dmitri Rychkov, Evan Henrich, Helen E R Miller, Joann Diray-Arce, Patrick Dunn, Audrey Lee, null null, Ofer Levy, Raphaël Gottardo, Minne M Sarwal, John S Tsang, Mayte Suárez-Fariñas, Rafick-Pierre Sékaly, Steven H Kleinstein, Bali Pulendran
Transcriptional atlas of the human immune response to 13 vaccines reveals a common predictor of vaccine-induced antibody responses. Nature immunology (2022)
Miranda C Lahman, Thomas M Schmitt, Kelly G Paulson, Nathalie Vigneron, Denise Buenrostro, Felecia D Wagener, Valentin Voillet, Lauren Martin, Raphaël Gottardo, Jason Bielas, M Juliana McElrath, Derek L Stirewalt, Era L Pogosova-Agadjanyan, Cecilia C S Yeung, Robert H Pierce, Daniel N Egan, Merav Bar, Paul C Hendrie, Sinéad Kinsella, Aesha Vakil, Jonah Butler, Mary Chaffee, Jonathan Linton, Megan S McAfee, Daniel S Hunter, Marie Bleakley, Anthony Rongvaux, Benoit J Van den Eynde, Aude G Chapuis, Philip D Greenberg
Targeting an alternate Wilms' tumor antigen 1 peptide bypasses immunoproteasome dependency. Science translational medicine 14 (631) (2022)
Bryan T Mayer, Allan C deCamp, Yunda Huang, Joshua T Schiffer, Raphaël Gottardo, Peter B Gilbert, Daniel B Reeves
Optimizing clinical dosing of combination broadly neutralizing antibodies for HIV prevention. PLoS computational biology 18 (4) (2022)
Joann Diray-Arce, Helen E R Miller, Evan Henrich, Bram Gerritsen, Matthew P Mulè, Slim Fourati, Jeremy Gygi, Thomas Hagan, Lewis E Tomalin, Dmitry Rychkov, Dmitri Kazmin, Daniel G Chawla, Hailong Meng, Patrick Dunn, John Campbell, null null, Minnie Sarwal, John S Tsang, Ofer Levy, Bali Pulendran, Rafick Sekaly, Aris Floratos, Raphaël Gottardo, Steven H Kleinstein, Mayte Suárez-Fariñas
The Immune Signatures data resource, a compendium of systems vaccinology datasets. Scientific data 9 (1) (2022)
Gemma Moncunill, Jason Carnes, William Chad Young, Lindsay N Carpp, Stephen De Rosa, Joseph J Campo, Augusto Nhabomba, Maxmillian Mpina, Chenjerai Jairoce, Greg Finak, Paige Haas, Carl Muriel, Phu Van, Héctor Sanz, Sheetij Dutta, Benjamin Mordmüller, Selidji T Agnandji, Núria Díez-Padrisa, Nana Aba Williams, John J Aponte, Clarissa Valim, Daniel E Neafsey, Claudia Daubenberger, M Juliana McElrath, Carlota Dobano, Kenneth D Stuart, Raphaël Gottardo
Transcriptional correlates of malaria in RTS,S/AS01-vaccinated African children: a matched case-control study. eLife 11 (2022)
Kristen W Cohen, Yuan Tian, Casey Thayer, Aaron Seese, Robert Amezquita, M Juliana McElrath, Stephen C De Rosa, Raphaël Gottardo
Th2-Biased Transcriptional Profile Predicts HIV Envelope-Specific Polyfunctional CD4 + T Cells That Correlated with Reduced Risk of Infection in RV144 Trial. Journal of immunology (Baltimore, Md. : 1950) 209 (3) (2022)
Yuan Tian, Lindsay N Carpp, Helen E R Miller, Michael A Zager, Evan William Newell, Raphaël Gottardo
Single-cell immunology of SARS-CoV-2 infection. Nature biotechnology 40 (1) (2021)
Jihoon W Lee, Yapeng Su, Priyanka Baloni, Daniel G Chen, Ana Jimena Pavlovitch-Bedzyk, Dan Yuan, Venkata R Duvvuri, Rachel H Ng, Jongchan Choi, Jingyi Xie, Rongyu Zhang, Kim Murray, Sergey Kornilov, Brett Smith, Andrew T Magis, Dave S B Hoon, Jennifer J Hadlock, Jason D Goldman, Nathan D Price, Raphaël Gottardo, Mark M Davis, Leroy Hood, Philip D Greenberg, James R Heath
Integrated analysis of plasma and single immune cells uncovers metabolic changes in individuals with COVID-19. Nature biotechnology (2021)
Sudhir Pai Kasturi, Mohammed Ata Ur Rasheed, Colin Havenar-Daughton, Mathew Pham, Traci Legere, Zarpheen Jinnah Sher, Yevgeny Kovalenkov, Sanjeev Gumber, Jessica Y Huang, Raphaël Gottardo, William Fulp, Alicia Sato, Sheetal Sawant, Sherry Stanfield-Oakley, Nicole L Yates, Celia C LaBranche, S Munir Alam, Georgia Tomaras, Guido Ferrari, David C Montefiori, Jens Wrammert, François J Villinger, Mark A Tomai, John Vasilakos, Christopher B Fox, Steven G Reed, Barton F Haynes, Shane Crotty, Rajesh M Valanparambil, Bali Pulendran
3M-052, a synthetic TLR-7/8 agonist, induces durable HIV-1 envelope-specific plasma cells and humoral immunity in nonhuman primates. Science immunology 5 (48) (2021)
Sarah C Vick, Marie Frutoso, Florian Mair, Andrew J Konecny, Evan Greene, Caitlin R Wolf, Jennifer K Logue, Nicholas M Franko, Jim Boonyaratanakornkit, Raphaël Gottardo, Joshua T Schiffer, Helen Y Chu, Martin Prlic, Jennifer M Lund
A regulatory T cell signature distinguishes the immune landscape of COVID-19 patients from those with other respiratory infections. Science advances 7 (46) (2021)
Steven J Wu, Scott N Furlan, Anca B Mihalas, Hatice S Kaya-Okur, Abdullah H Feroze, Samuel N Emerson, Ye Zheng, Kalee Carson, Patrick J Cimino, C Dirk Keene, Jay F Sarthy, Raphaël Gottardo, Kami Ahmad, Steven Henikoff, Anoop P Patel
Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression. Nature biotechnology 39 (7) (2021)
Edward Zhao, Matthew R Stone, Xing Ren, Jamie Guenthoer, Kimberly S Smythe, Thomas Pulliam, Stephen R Williams, Cedric R Uytingco, Sarah E B Taylor, Paul T Nghiem, Jason H Bielas, Raphaël Gottardo
Spatial transcriptomics at subspot resolution with BayesSpace. Nature biotechnology 39 (11) (2021)
Etienne Becht, Daniel Tolstrup, Charles-Antoine Dutertre, Peter A Morawski, Daniel J Campbell, Florent Ginhoux, Evan William Newell, Raphaël Gottardo, Mark B Headley
High-throughput single-cell quantification of hundreds of proteins using conventional flow cytometry and machine learning. Science advances 7 (39) (2021)
Alexander I Salter, Anusha Rajan, Jacob J Kennedy, Richard G Ivey, Sarah A Shelby, Isabel Leung, Megan L Templeton, Vishaka Muhunthan, Valentin Voillet, Daniel Sommermeyer, Jeffrey R Whiteaker, Raphaël Gottardo, Sarah L Veatch, Amanda G Paulovich, Stanley R Riddell
Comparative analysis of TCR and CAR signaling informs CAR designs with superior antigen sensitivity and in vivo function. Science signaling 14 (697) (2021)
Etienne Becht, Edward Zhao, Robert A Amezquita, Raphaël Gottardo
Aggregating transcript-level analyses for single-cell differential gene expression. Nature methods 17 (6) (2020)
Alyssa Sheih, Valentin Voillet, Laïla-Aïcha Hanafi, Hannah A DeBerg, Masanao Yajima, Reed Hawkins, Vivian H Gersuk, Stanley R Riddell, David G Maloney, Martin E Wohlfahrt, Dnyanada Pande, Mark R Enstrom, Hans-Peter Kiem, Jennifer E Adair, Raphaël Gottardo, Peter S Linsley, Cameron J Turtle
Clonal kinetics and single-cell transcriptional profiling of CAR-T cells in patients undergoing CD19 CAR-T immunotherapy. Nature communications 11 (1) (2020)
M Giel-Moloney, M Esteban, B H Oakes, M Vaine, B Asbach, R Wagner, G J Mize, A G Spies, J McElrath, M Perreau, T Roger, A Ives, T Calandra, D Weiss, B Perdiguero, K V Kibler, B Jacobs, S Ding, G D Tomaras, D C Montefiori, G Ferrari, N L Yates, M Roederer, S F Kao, K E Foulds, Bryan T Mayer, C Bennett, Raphaël Gottardo, M Parrington, J Tartaglia, S Phogat, G Pantaleo, H Kleanthous, K V Pugachev
Recombinant HIV-1 vaccine candidates based on replication-defective flavivirus vector. Scientific reports 9 (1) (2019)
Craig Fenwick, Juan-Luis Loredo-Varela, Victor Joo, Céline Pellaton, Alex Farina, Navina Rajah, Line Esteves-Leuenberger, Thibaut Decaillon, Madeleine Suffiotti, Alessandra Noto, Khalid Ohmiti, Raphaël Gottardo, Winfried Weissenhorn, Guiseppe Pantaleo
Tumor suppression of novel anti-PD-1 antibodies mediated through CD28 costimulatory pathway. The Journal of experimental medicine 216 (7) (2019)
K G Paulson, V Voillet, M S McAfee, D S Hunter, F D Wagener, M Perdicchio, W J Valente, S J Koelle, C D Church, N Vandeven, H Thomas, A G Colunga, J G Iyer, C Yee, R Kulikauskas, David M Koelle, R H Pierce, J H Bielas, P D Greenberg, S Bhatia, Raphaël Gottardo, Paul T Nghiem, A G Chapuis
Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA. Nature communications 9 (1) (2018)
Alexander I Salter, Richard G Ivey, Jacob J Kennedy, Valentin Voillet, Anusha Rajan, Eva J Alderman, Uliana J Voytovich, Chenwei Lin, Daniel Sommermeyer, Lingfeng Liu, Jeffrey R Whiteaker, Raphaël Gottardo, Amanda G Paulovich, Stanley R Riddell
Phosphoproteomic analysis of chimeric antigen receptor signaling reveals kinetic and quantitative differences that affect cell function. Science signaling 11 (544) (2018)
Daniel Commenges, Chariff Alkhassim, Raphaël Gottardo, Boris Hejblum, Rodolphe Thiébaut
cytometree: A binary tree algorithm for automatic gating in cytometry analysis. Cytometry. Part A : the journal of the International Society for Analytical Cytology 93 (11) (2018)