Sébastien Gagneux (Sebastien Gagneux, S Gagneux)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 20

Top Topics

Genome Wide Association

Acinetobacter Baumannii

Top Venues

Nature communications

Microbiology spectrum

Nature medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Yves Tschan, Mohamed Sasamalo, Hellen Hiza, Jacques Fellay, Sébastien Gagneux, Klaus Reither, Jerry Hella, Damien Portevin
Diagnostic accuracy of a sequence-specific Mtb -DNA hybridization assay in urine: a case-control study including subclinical TB cases. Microbiology spectrum (2024)
Yves Tschan, Mohamed Sasamalo, Hellen Hiza, Jacques Fellay, Sébastien Gagneux, Klaus Reither, Jerry Hella, Damien Portevin
Diagnostic accuracy of a sequence-specific Mtb -DNA hybridization assay in urine: a case-control study including subclinical TB cases. Microbiology spectrum 12 (6) (2024)
Yves Tschan, Mohamed Sasamalo, Hellen Hiza, Jacques Fellay, Sébastien Gagneux, Klaus Reither, Jerry Hella, Damien Portevin
Diagnostic accuracy of a sequence-specific Mtb -DNA hybridization assay in urine: a case-control study including subclinical TB cases. Microbiology spectrum 12 (6) (2024)
Chloé Loiseau, Etthel M Windels, Sebastian M Gygli, Levan Jugheli, Nino Maghradze, Daniela Brites, Amanda Ross, Galo Goig, Miriam Reinhard, Sonia Borrell, Andrej Trauner, Anna Dötsch, Rusudan Aspindzelashvili, Rebecca Denes, Klaus Reither, Christian Beisel, Nestani Tukvadze, Zaza Avaliani, Tanja Stadler, Sébastien Gagneux
The relative transmission fitness of multidrug-resistant Mycobacterium tuberculosis in a drug resistance hotspot. Nature communications 14 (1) (2023)
Nino Maghradze, Levan Jugheli, Sonia Borrell, Nestani Tukvadze, Russell R Kempker, Henry M Blumberg, Sébastien Gagneux
Developing customized stepwise MIRU-VNTR typing for tuberculosis surveillance in Georgia. PloS one 17 (3) (2022)
Helen Cox, Galo A Goig, Zubeida Salaam-Dreyer, Anzaan Dippenaar, Anja Reuter, Erika Mohr-Holland, Johnny Daniels, Patrick G T Cudahy, Mark P Nicol, Sonia Borrell, Miriam Reinhard, Anna Doetsch, Christian Beisel, Sébastien Gagneux, Robin M Warren, Jennifer Furin
Whole-Genome Sequencing Has the Potential To Improve Treatment for Rifampicin-Resistant Tuberculosis in High-Burden Settings: a Retrospective Cohort Study. Journal of clinical microbiology 60 (3) (2022)
Zhi Ming Xu, Sina Rueger, Michaela Zwyer, Daniela Brites, Hellen Hiza, Miriam Reinhard, Liliana Rutaihwa, Sonia Borrell, Faima Isihaka, Hosiana Temba, Thomas Maroa, Rastard Naftari, Jerry Hella, Mohamed Sasamalo, Klaus Reither, Damien Portevin, Sébastien Gagneux, Jacques Fellay
Using population-specific add-on polymorphisms to improve genotype imputation in underrepresented populations. PLoS computational biology 18 (1) (2022)
Matthias Merker, Jean-Philippe Rasigade, Maxime Barbier, Helen Cox, Silke Feuerriegel, Thomas Andreas Kohl, Egor Shitikov, Kadri Klaos, Cyril Gaudin, Rudy Antoine, Roland Diel, Sonia Borrell, Sébastien Gagneux, Vladyslav Nikolayevskyy, Sönke Andres, Valeriu Crudu, Philip Supply, Stefan Niemann, Thierry Wirth
Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis. Nature communications 13 (1) (2022)
Miguel Moreno-Molina, Natalia Shubladze, Iza Khurtsilava, Zaza Avaliani, Nino Bablishvili, Manuela Torres-Puente, Luis Villamayor, Andrei Gabrielian, Alex Rosenthal, Cristina Vilaplana, Sébastien Gagneux, Russell R Kempker, Sergo Vashakidze, Iñaki Comas
Genomic analyses of Mycobacterium tuberculosis from human lung resections reveal a high frequency of polyclonal infections. Nature communications 12 (1) (2021)
Sebastian M Gygli, Chloé Loiseau, Levan Jugheli, Natia Adamia, Andrej Trauner, Miriam Reinhard, Amanda Ross, Sonia Borrell, Rusudan Aspindzelashvili, Nino Maghradze, Klaus Reither, Christian Beisel, Nestani Tukvadze, Zaza Avaliani, Sébastien Gagneux
Prisons as ecological drivers of fitness-compensated multidrug-resistant Mycobacterium tuberculosis. Nature medicine 27 (7) (2021)
Kimberley J Hockings, Benjamin Mubemba, Charlotte Avanzi, Kamilla Pleh, Ariane Düx, Elena Bersacola, Joana Bessa, Marina Ramon, Sonja Metzger, Livia V Patrono, Jenny E Jaffe, Andrej Benjak, Camille Bonneaud, Philippe Busso, Emmanuel Couacy-Hymann, Moussa Gado, Sébastien Gagneux, Roch C Johnson, Mamoudou Kodio, Joshua G Lynton-Jenkins, Irina Morozova, Kerstin Mätz-Rensing, Aissa Regalla, Abílio R Said, Verena J Schuenemann, Samba O Sow, John S Spencer, Markus Ulrich, Hyacinthe Zoubi, Stewart Thomas Cole, Roman M Wittig, Sebastien Calvignac-Spencer, Fabian Hubertus Leendertz
Leprosy in wild chimpanzees. Nature 598 (7882) (2021)
Zubeida Salaam-Dreyer, Elizabeth M Streicher, Frederick A Sirgel, Fabrizio Menardo, Sonia Borrell, Miriam Reinhard, Anna Doetsch, Patrick G T Cudahy, Erika Mohr-Holland, Johnny Daniels, Anzaan Dippenaar, Mark P Nicol, Sébastien Gagneux, Robin M Warren, Helen Cox
Rifampicin-Monoresistant Tuberculosis Is Not the Same as Multidrug-Resistant Tuberculosis: a Descriptive Study from Khayelitsha, South Africa. Antimicrobial agents and chemotherapy 65 (11) (2021)
Michaela Zwyer, Cengiz Çavusoglu, Giovanni Ghielmetti, Maria Lodovica Pacciarini, Erika Scaltriti, Dick Van Soolingen, Anna Dötsch, Miriam Reinhard, Sébastien Gagneux, Daniela Brites
A new nomenclature for the livestock-associated Mycobacterium tuberculosis complex based on phylogenomics. Open research Europe 1 (2021)
Michael L McHenry, Jacquelaine Bartlett, Robert P Igo, Eddie Mujjwiga Wampande, Penelope Benchek, Harriet Mayanja-Kizza, Kyle Fluegge, Noemi B Hall, Sébastien Gagneux, Sarah A Tishkoff, Christian Morberg Wejse, Giorgio Sirugo, W Henry Boom, Moses Joloba, Scott M Williams, Catherine M Stein
Interaction between host genes and Mycobacterium tuberculosis lineage can affect tuberculosis severity: Evidence for coevolution? PLoS genetics 16 (4) (2020)
Jean Claude Semuto Ngabonziza, Chloé Loiseau, Michael Marceau, Agathe Jouet, Fabrizio Menardo, Oren Tzfadia, Rudy Antoine, Esdras Belamo Niyigena, Wim Mulders, Kristina Fissette, Maren Diels, Cyril Gaudin, Stéphanie Duthoy, Willy Ssengooba, Emmanuel André, Michel K Kaswa, Yves Mucyo Habimana, Daniela Brites, Dissou Affolabi, Jean Baptiste Mazarati, Bouke Catherine de Jong, Leen Rigouts, Sébastien Gagneux, Conor Joseph Meehan, Philip Supply
A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region. Nature communications 11 (1) (2020)
Ove Øyås, Sonia Borrell, Andrej Trauner, Michael Zimmermann, Julia Feldmann Uhry, Thomas Liphardt, Sébastien Gagneux, Joerg Stelling, Uwe Sauer, Mattia Zampieri
Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America 117 (15) (2020)
Liliana K Rutaihwa, Mohamed Sasamalo, Aladino Jaleco, Jerry Hella, Ally Kingazi, Lujeko Kamwela, Amri Kingalu, Bryceson Malewo, Raymond Shirima, Anna Doetsch, Julia Feldmann, Miriam Reinhard, Sonia Borrell, Daniela Brites, Klaus Reither, Basra Doulla, Lukas Fenner, Sébastien Gagneux
Insights into the genetic diversity of Mycobacterium tuberculosis in Tanzania. PloS one 14 (4) (2019)
Álvaro Chiner-Oms, Leonor Sánchez-Busó, Jukka Corander, Sébastien Gagneux, Simon R Harris, D Young, Fernando Gonzáles-Candelas, Iñaki Comas
Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex. Science advances 5 (6) (2019)
Mattia Zampieri, Balazs Szappanos, Maria Virginia Buchieri, Andrej Trauner, Ilaria Piazza, Paola Picotti, Sébastien Gagneux, Sonia Borrell, Brigitte Gicquel, Joel Lelievre, Balazs Papp, Uwe Sauer
High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds. Science translational medicine 10 (429) (2019)
Nino Maghradze, Levan Jugheli, Sonia Borrell, Nestani Tukvadze, Rusudan Aspindzelashvili, Zaza Avaliani, Klaus Reither, Sébastien Gagneux
Classifying recurrent Mycobacterium tuberculosis cases in Georgia using MIRU-VNTR typing. PloS one 14 (10) (2019)