Lindsay J Hall (Lindsay Hall, L J Hall)

ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 43

Top Venues

Nature

Microbiology resource announcements

Nature communications

Wellcome open research

Quadram Institute Bioscience

University of Cambridge (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Quadram Institute Bioscience

United Kingdom

Microbiome Group Leader :: Gut Microbes & Health

University of East Anglia

United Kingdom

Senior Lecturer in Gastrointestinal Science :: Norwich Medical School

University of East Anglia

United Kingdom

Lecturer in Gastrointestinal Science :: Norwich Medical School

University College Cork

Ireland

Postdoctoral Fellow :: APC Microbiome Institute

Education History

University of Cambridge

United Kingdom

PHD :: Wellcome Trust Sanger Institute

University of Glasgow

United Kingdom

BSC :: Microbiology

Publications

Matthew J Dalby, Raymond Kiu, Iliana R Serghiou, Asuka Miyazaki, Holly Acford-Palmer, Rathavy Tung, Shabhonam Caim, Sarah Phillips, Magdalena Kujawska, Mitsuaki Matsui, Azusa Iwamoto, Bunsreng Taking, Sharon E Cox, Lindsay J Hall
Faecal microbiota and cytokine profiles of rural Cambodian infants linked to diet and diarrhoeal episodes. NPJ biofilms and microbiomes 10 (1) (2024)
Danai Tavonga Zhou, Taona E Mudhluli, Lindsay J Hall, Justen Manasa, Shungu Munyati
A Scoping Review of Gut Microbiome and Bifidobacterium Research in Zimbabwe: Implications for Future Studies. Pediatric health, medicine and therapeutics 14 (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Charlotte J Neumann, Alexander Mahnert, Christina Kumpitsch, Raymond Kiu, Matthew J Dalby, Magdalena Kujawska, Tobias Madl, Stefan Kurath-Koller, Berndt Urlesberger, Bernhard Resch, Lindsay J Hall, Christine Moissl-Eichinger
Clinical NEC prevention practices drive different microbiome profiles and functional responses in the preterm intestine. Nature communications 14 (1) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Charlotte J Neumann, Alexander Mahnert, Christina Kumpitsch, Raymond Kiu, Matthew J Dalby, Magdalena Kujawska, Tobias Madl, Stefan Kurath-Koller, Berndt Urlesberger, Bernhard Resch, Lindsay J Hall, Christine Moissl-Eichinger
Clinical NEC prevention practices drive different microbiome profiles and functional responses in the preterm intestine. Nature communications 14 (1) (2023)
Henrik Munch Roager, Catherine Stanton, Lindsay J Hall
Microbial metabolites as modulators of the infant gut microbiome and host-microbial interactions in early life. Gut microbes 15 (1) (2023)
Charlotte J Neumann, Alexander Mahnert, Christina Kumpitsch, Raymond Kiu, Matthew J Dalby, Magdalena Kujawska, Tobias Madl, Stefan Kurath-Koller, Berndt Urlesberger, Bernhard Resch, Lindsay J Hall, Christine Moissl-Eichinger
Clinical NEC prevention practices drive different microbiome profiles and functional responses in the preterm intestine. Nature communications 14 (1) (2023)
Henrik Munch Roager, Catherine Stanton, Lindsay J Hall
Microbial metabolites as modulators of the infant gut microbiome and host-microbial interactions in early life. Gut microbes 15 (1) (2023)
Raymond Kiu, Alexander G Shaw, Kathleen Sim, Antia Acuna-Gonzalez, Christopher A Price, Harley Bedwell, Sally A Dreger, Wesley J Fowler, Emma Cornwell, Derek Pickard, Gusztav Belteki, Jennifer Malsom, Sarah Phillips, Gregory R Young, Zoe Schofield, Cristina Alcon-Giner, Janet E Berrington, Christopher J Stewart, Gordon Dougan, Paul Clarke, Gillian R Douce, Stephen D Robinson, J Simon Kroll, Lindsay J Hall
Particular genomic and virulence traits associated with preterm infant-derived toxigenic Clostridium perfringens strains. Nature microbiology (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Steve A James, Andrea Telatin, David Baker, Rhiannon Evans, Paul Clarke, Lindsay J Hall, Simon R Carding
Draft Genome Sequence of a Preterm Infant-Derived Isolate of Candida parapsilosis. Microbiology resource announcements 12 (3) (2023)
Steve A James, Andrea Telatin, David Baker, Rhiannon Evans, Paul Clarke, Lindsay J Hall, Simon R Carding
Draft Genome Sequence of a Preterm Infant-Derived Isolate of Candida parapsilosis. Microbiology resource announcements 12 (3) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Charlotte J Neumann, Alexander Mahnert, Christina Kumpitsch, Raymond Kiu, Matthew J Dalby, Magdalena Kujawska, Tobias Madl, Stefan Kurath-Koller, Berndt Urlesberger, Bernhard Resch, Lindsay J Hall, Christine Moissl-Eichinger
Clinical NEC prevention practices drive different microbiome profiles and functional responses in the preterm intestine. Nature communications 14 (1) (2023)
Steve A James, Andrea Telatin, David Baker, Rhiannon Evans, Paul Clarke, Lindsay J Hall, Simon R Carding
Draft Genome Sequence of a Preterm Infant-Derived Isolate of Candida parapsilosis. Microbiology resource announcements (2023)
Danai Tavonga Zhou, Taona E Mudhluli, Lindsay J Hall, Justen Manasa, Shungu Munyati
A Scoping Review of Gut Microbiome and Bifidobacterium Research in Zimbabwe: Implications for Future Studies. Pediatric health, medicine and therapeutics 14 (2023)
Hoang N H Tran, Trang Nguyen Hoang Thu, Phu Huu Nguyen, Chi Nguyen Vo, Khanh Van Doan, Chau Nguyen Ngoc Minh, Ngoc Tuan Nguyen, Van Ngoc Duc Ta, Khuong An Vu, Thanh Danh Hua, To Nguyen Thi Nguyen, Tan Trinh Van, Trung Pham Duc, Ba Lap Duong, Phuc Minh Nguyen, Vinh Chuc Hoang, Duy Thanh Pham, Guy E Thwaites, Lindsay J Hall, Daniel J Slade, Stephen Baker, Vinh Hung Tran, Hao Chung The
Tumour microbiomes and Fusobacterium genomics in Vietnamese colorectal cancer patients. NPJ biofilms and microbiomes 8 (1) (2022)
Paul Clarke, Martin J Shearer, Dominic J Harrington, Amy Nichols, Vennila Ponnusamy, Ajit Mahaveer, Kieran Voong, Karen Dockery, Nicky Holland, Shaveta Mulla, Lindsay J Hall, Cecile Maassen, Petra Lux, Leon J Schurgers, Dominic Jon Harrington
Exclusively breastmilk-fed preterm infants are at high risk of developing subclinical vitamin K deficiency despite intramuscular prophylaxis at birth. Journal of thrombosis and haemostasis : JTH 20 (12) (2022)
Johanne Brooks-Warburton, Dezső Módos, Padhmanand Sudhakar, Matthew Madgwick, John P Thomas, Balazs Bohar, David Fazekas, Azedine Zoufir, Orsolya Kapuy, Mate Szalay-Beko, Bram Verstockt, Lindsay J Hall, Alastair J M Watson, Mark Tremelling, Miles Parkes, Severine Vermeire, Andreas Bender, Simon R Carding, Tamas Korcsmaros
A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis. Nature communications 13 (1) (2022)
Magdalena Kujawska, Aura Raulo, Molly Millar, Fred Warren, Laima Baltrūnaitė, Sarah C L Knowles, Lindsay J Hall
Bifidobacterium castoris strains isolated from wild mice show evidence of frequent host switching and diverse carbohydrate metabolism potential. ISME communications 2 (1) (2022)
Jorge Lopez-Tello, Zoe Schofield, Raymond Kiu, Matthew J Dalby, Douwe van Sinderen, Gwénaëlle Le Gall, Amanda N Sferruzzi-Perri, Lindsay J Hall
Maternal gut microbiota Bifidobacterium promotes placental morphogenesis, nutrient transport and fetal growth in mice. Cellular and molecular life sciences : CMLS 79 (7) (2022)
Hao Chung The, Chau Nguyen Ngoc Minh, Chau Tran Thi Hong, To Nguyen Thi Nguyen, Lindsay J Pike, Caroline Zellmer, Trung Pham Duc, Tuan-Anh Tran, Tuyen Ha Thanh, Minh Pham Van, Guy E Thwaites, Maia A Rabaa, Lindsay J Hall, Stephen Baker
Exploring the Genomic Diversity and Antimicrobial Susceptibility of Bifidobacterium pseudocatenulatum in a Vietnamese Population. Microbiology spectrum 9 (2) (2021)
Sarah Phillips, Rachel Watt, Thomas Atkinson, George M Savva, Antonietta Hayhoe, Lindsay J Hall, null null
The Pregnancy and EARly Life study (PEARL) - a longitudinal study to understand how gut microbes contribute to maintaining health during pregnancy and early life. BMC pediatrics 21 (1) (2021)
Lindsay J Hall, Stephen D Robinson
Bacterial strains augment cancer therapeutics. Nature microbiology 6 (3) (2021)
Matthew J Dalby, Lindsay J Hall
Recent advances in understanding the neonatal microbiome. F1000Research 9 (2020)
Kaitlin H Wade, Lindsay J Hall
Improving causality in microbiome research: can human genetic epidemiology help? Wellcome open research (2020)
Stephen A James, Sarah Phillips, Andrea Telatin, Dave J Baker, Rebecca Ansorge, Paul Clarke, Lindsay J Hall, Simon R Carding
Preterm Infants Harbour a Rapidly Changing Mycobiota That Includes Candida Pathobionts. Journal of fungi (Basel, Switzerland) 6 (4) (2020)
Deborah Püngel, Agatha Treveil, Matthew J Dalby, Shabhonam Caim, Ian J Colquhoun, Catherine Booth, Jennifer Ketskemety, Tamas Korcsmaros, Douwe van Sinderen, Melissa A E Lawson, Lindsay J Hall
Bifidobacterium breve UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate. Nutrients 12 (4) (2020)
Kaitlin H Wade, Lindsay J Hall
Improving causality in microbiome research: can human genetic epidemiology help? Wellcome open research (2020)
Raymond Kiu, Kathleen Sim, Alex Shaw, Emma Cornwell, Derek Pickard, J Simon Kroll, Lindsay J Hall
Genomic Analysis of Clostridium perfringens BEC/CPILE-Positive, Toxinotype D and E Strains Isolated from Healthy Children. Toxins 11 (9) (2019)
Richard M Leggett, Cristina Alcon-Giner, Darren Heavens, Shabhonam Caim, Thomas C Brook, Magdalena Kujawska, Samuel Martin, Ned Peel, Holly Acford-Palmer, Lesley Hoyles, Paul Clarke, Lindsay J Hall, Matthew D Clark
Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens. Nature microbiology 5 (3) (2019)
Yuhao Chen, Thomas C Brook, Cristina Alcon-Giner, Paul Clarke, Lindsay J Hall, Lesley Hoyles
Draft Genome Sequence of Raoultella ornithinolytica P079F W, Isolated from the Feces of a Preterm Infant. Microbiology resource announcements 8 (33) (2019)
Yuhao Chen, Thomas C Brook, Cristina Alcon-Giner, Paul Clarke, Lindsay J Hall, Lesley Hoyles
Draft Genome Sequences of Citrobacter freundii and Citrobacter murliniae Strains Isolated from the Feces of Preterm Infants. Microbiology resource announcements 8 (33) (2019)
Nicholas A Scott, Anna Andrusaite, Peter Andersen, Melissa A E Lawson, Cristina Alcon-Giner, Charlotte Leclaire, Shabhonam Caim, Gwenaelle Le Gall, Tovah N Shaw, James P R Connolly, Andrew J Roe, Hannah Wessel, Alberto Bravo-Blas, Carolyn A Thomson, Verena Kästele, Ping Wang, Daniel A Peterson, Allison J Bancroft, Xuhang Li, Richard K Grencis, Allan Mcl Mowat, Lindsay J Hall, Mark A Travis, Simon W F Milling, Elizabeth R Mann
Antibiotics induce sustained dysregulation of intestinal T cell immunity by perturbing macrophage homeostasis. Science translational medicine 10 (464) (2019)
Alyshah Abdul Sultan, Christian Mallen, Sara Muller, Samantha Hider, Ian Scott, Toby Helliwell, Lindsay J Hall
Antibiotic use and the risk of rheumatoid arthritis: a population-based case-control study. BMC medicine 17 (1) (2019)
Melissa A E Lawson, Ian J O'Neill, Magdalena Kujawska, Sree Gowrinadh Javvadi, Anisha D Wijeyesekera, Zak Flegg, Lisa Chalklen, Lindsay J Hall
Breast milk-derived human milk oligosaccharides promote Bifidobacterium interactions within a single ecosystem. The ISME journal 14 (2) (2019)
Kaitlin H Wade, Lindsay J Hall
Improving causality in microbiome research: can human genetic epidemiology help? Wellcome open research 4 (2019)
Raymond Kiu, Lindsay J Hall
An update on the human and animal enteric pathogen Clostridium perfringens. Emerging microbes & infections 7 (1) (2018)
K R Hughes, L C Harnisch, C Alcon-Giner, S Mitra, C J Wright, J Ketskemety, Douwe Van Sinderen, Alastair J M Watson, Lindsay J Hall
Bifidobacterium breve reduces apoptotic epithelial cell shedding in an exopolysaccharide and MyD88-dependent manner. Open biology 7 (1) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Lindsay J Hall (Lindsay Hall, L J Hall)