Giacomo Oliveira

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 26

Top Topics

Acute Myeloid Leukemia

Positive Breast Cancer

Top Venues

Nature biotechnology

Nature communications

Science immunology

This page only lists publications with an associated author ORCID identifier.

Publications

Livius Penter, Nicoletta Cieri, Katie Maurer, Marwan Kwok, Haoxiang Lyu, Wesley S Lu, Giacomo Oliveira, Satyen H Gohil, Ignaty Leshchiner, Caleb A Lareau, Leif S Ludwig, Donna S Neuberg, Haesook T Kim, Shuqiang Li, Lars Bullinger, Jerome Ritz, Gad A Getz, Jacqueline S Garcia, Robert J Soiffer, Kenneth J Livak, Catherine J Wu
Tracking rare single donor and recipient immune and leukemia cells after allogeneic hematopoietic cell transplantation using mitochondrial DNA mutations. Blood cancer discovery (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Author Correction: Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Livius Penter, Mehdi Borji, Adi Nagler, Haoxiang Lyu, Wesley S Lu, Nicoletta Cieri, Katie Maurer, Giacomo Oliveira, Aziz M Al'Khafaji, Kiran V Garimella, Shuqiang Li, Donna S Neuberg, Jerome Ritz, Robert J Soiffer, Jacqueline S Garcia, Kenneth J Livak, Catherine J Wu
Integrative genotyping of cancer and immune phenotypes by long-read sequencing. Nature communications 15 (1) (2024)
Livius Penter, Mehdi Borji, Adi Nagler, Haoxiang Lyu, Wesley S Lu, Nicoletta Cieri, Katie Maurer, Giacomo Oliveira, Aziz M Al'Khafaji, Kiran V Garimella, Shuqiang Li, Donna S Neuberg, Jerome Ritz, Robert J Soiffer, Jacqueline S Garcia, Kenneth J Livak, Catherine J Wu
Integrative genotyping of cancer and immune phenotypes by long-read sequencing. Nature communications 15 (1) (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Livius Penter, Mehdi Borji, Adi Nagler, Haoxiang Lyu, Wesley S Lu, Nicoletta Cieri, Katie Maurer, Giacomo Oliveira, Aziz M Al'Khafaji, Kiran V Garimella, Shuqiang Li, Donna S Neuberg, Jerome Ritz, Robert J Soiffer, Jacqueline S Garcia, Kenneth J Livak, Catherine J Wu
Integrative genotyping of cancer and immune phenotypes by long-read sequencing. Nature communications 15 (1) (2024)
Livius Penter, Mehdi Borji, Adi Nagler, Haoxiang Lyu, Wesley S Lu, Nicoletta Cieri, Katie Maurer, Giacomo Oliveira, Aziz M Al'Khafaji, Kiran V Garimella, Shuqiang Li, Donna S Neuberg, Jerome Ritz, Robert J Soiffer, Jacqueline S Garcia, Kenneth J Livak, Catherine J Wu
Integrative genotyping of cancer and immune phenotypes by long-read sequencing. Nature communications 15 (1) (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Nicoletta Cieri, Nidhi Hookeri, Kari Stromhaug, Liang Li, Julia Keating, Paula Díaz-Fernández, Valle Gómez-García de Soria, Jonathan Stevens, Raphael Kfuri-Rubens, Yiren Shao, Kameron A Kooshesh, Kaila Powell, Helen Ji, Gabrielle M Hernandez, Jennifer Abelin, Susan Klaeger, Cleo Forman, Karl R Clauser, Siranush Sarkizova, David A Braun, Livius Penter, Haesook T Kim, William J Lane, Giacomo Oliveira, Leslie S Kean, Shuqiang Li, Kenneth J Livak, Steven A Carr, Derin B Keskin, Cecilia Muñoz-Calleja, Vincent T Ho, Jerome Ritz, Robert J Soiffer, Donna S Neuberg, Chip Stewart, Gad A Getz, Catherine J Wu
Systematic identification of minor histocompatibility antigens predicts outcomes of allogeneic hematopoietic cell transplantation. Nature biotechnology (2024)
Livius Penter, Mehdi Borji, Adi Nagler, Haoxiang Lyu, Wesley S Lu, Nicoletta Cieri, Katie Maurer, Giacomo Oliveira, Aziz M Al'Khafaji, Kiran V Garimella, Shuqiang Li, Donna S Neuberg, Jerome Ritz, Robert J Soiffer, Jacqueline S Garcia, Kenneth J Livak, Catherine J Wu
Integrative genotyping of cancer and immune phenotypes by long-read sequencing. Nature communications 15 (1) (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Author Correction: Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Antonela Merlotti, Benjamin Sadacca, Yago A Arribas, Mercia Ngoma, Marianne Burbage, Christel Goudot, Alexandre Houy, Ares Rocañín-Arjó, Ana Ines Lalanne, Agathe Seguin-Givelet, Marine Lefevre, Sandrine Heurtebise-Chrétien, Blandine Baudon, Giacomo Oliveira, Damarys Loew, Montserrat Carrascal, Catherine J Wu, Olivier Lantz, Marc-Henri Stern, Nicolas Girard, Joshua J Waterfall, Sebastian Amigorena
Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer. Science immunology 8 (80) (2023)
Giacomo Oliveira, Ann Marie Egloff, Alexander B Afeyan, Jacquelyn O Wolff, Zexiang Zeng, Rebecca D Chernock, Liye Zhou, Cameron M Messier, Patrick H Lizotte, Kathleen L Pfaff, Kari Stromhaug, Livius Penter, Robert I Haddad, Glenn J Hanna, Jonathan D Schoenfeld, Laura A Goguen, Donald J Annino, Vickie Y Jo, Peter Oppelt, Patrik Pipkorn, Ryan S Jackson, Sidharth V Puram, Randal C Paniello, Jason T Rich, Jason Webb, Jose P Zevallos, Mena Mansour, Jingxin Fu, Gavin P Dunn, Scott J Rodig, Jessica Ley, Luc G T Morris, Lara Dunn, Cloud P Paweletz, Dorina Kallogjeri, Jay F Piccirillo, Douglas R Adkins, Catherine J Wu, Ravindra Uppaluri
Preexisting tumor-resident T cells with cytotoxic potential associate with response to neoadjuvant anti-PD-1 in head and neck cancer. Science immunology 8 (87) (2023)
Antonela Merlotti, Benjamin Sadacca, Yago A Arribas, Mercia Ngoma, Marianne Burbage, Christel Goudot, Alexandre Houy, Ares Rocañín-Arjó, Ana Ines Lalanne, Agathe Seguin-Givelet, Marine Lefevre, Sandrine Heurtebise-Chrétien, Blandine Baudon, Giacomo Oliveira, Damarys Loew, Montserrat Carrascal, Catherine J Wu, Olivier Lantz, Marc-Henri Stern, Nicolas Girard, Joshua J Waterfall, Sebastian Amigorena
Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer. Science immunology 8 (80) (2023)
Antonela Merlotti, Benjamin Sadacca, Yago A Arribas, Mercia Ngoma, Marianne Burbage, Christel Goudot, Alexandre Houy, Ares Rocañín-Arjó, Ana Ines Lalanne, Agathe Seguin-Givelet, Marine Lefevre, Sandrine Heurtebise-Chrétien, Blandine Baudon, Giacomo Oliveira, Damarys Loew, Montserrat Carrascal, Catherine J Wu, Olivier Lantz, Marc-Henri Stern, Nicolas Girard, Joshua J Waterfall, Sebastian Amigorena
Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer. Science immunology 8 (80) (2023)
Livius Penter, Yang Liu, Jacquelyn O Wolff, Lin Yang, Len Taing, Aashna Jhaveri, Jackson Southard, Manishkumar Patel, Nicole Cullen, Kathleen Lindahl Pfaff, Nicoletta Cieri, Giacomo Oliveira, Seunghee Kim-Schulze, Srinika Ranasinghe, Rebecca Leonard, Taylor Robertson, Elizabeth A Morgan, Helen Chen, Minkyung H Song, Magdalena Thurin, Shuqiang Li, Scott J Rodig, Carrie Cibulskis, Stacey Gabriel, Pavan Bachireddy, Jerome Ritz, Howard Streicher, Donna Neuberg, F Stephen Hodi, Sacha Gnjatic, Matthew S Davids, Kenneth J Livak, Jennifer Altreuter, Franziska Michor, Robert J Soiffer, Jacqueline S Garcia, Catherine J Wu
Mechanisms of response and resistance to combined decitabine and ipilimumab for advanced myeloid disease. Blood (2023)
Livius Penter, Yang Liu, Jacquelyn O Wolff, Lin Yang, Len Taing, Aashna Jhaveri, Jackson Southard, Manishkumar Patel, Nicole Cullen, Kathleen Lindahl Pfaff, Nicoletta Cieri, Giacomo Oliveira, Seunghee Kim-Schulze, Srinika Ranasinghe, Rebecca Leonard, Taylor Robertson, Elizabeth A Morgan, Helen Chen, Minkyung H Song, Magdalena Thurin, Shuqiang Li, Scott J Rodig, Carrie Cibulskis, Stacey Gabriel, Pavan Bachireddy, Jerome Ritz, Howard Streicher, Donna Neuberg, F Stephen Hodi, Sacha Gnjatic, Matthew S Davids, Kenneth J Livak, Jennifer Altreuter, Franziska Michor, Robert J Soiffer, Jacqueline S Garcia, Catherine J Wu
Mechanisms of response and resistance to combined decitabine and ipilimumab for advanced myeloid disease. Blood (2023)
Livius Penter, Yang Liu, Jacquelyn O Wolff, Lin Yang, Len Taing, Aashna Jhaveri, Jackson Southard, Manishkumar Patel, Nicole Cullen, Kathleen Lindahl Pfaff, Nicoletta Cieri, Giacomo Oliveira, Seunghee Kim-Schulze, Srinika Ranasinghe, Rebecca Leonard, Taylor Robertson, Elizabeth A Morgan, Helen Chen, Minkyung H Song, Magdalena Thurin, Shuqiang Li, Scott J Rodig, Carrie Cibulskis, Stacey Gabriel, Pavan Bachireddy, Jerome Ritz, Howard Streicher, Donna Neuberg, F Stephen Hodi, Sacha Gnjatic, Matthew S Davids, Kenneth J Livak, Jennifer Altreuter, Franziska Michor, Robert J Soiffer, Jacqueline S Garcia, Catherine J Wu
Mechanisms of response and resistance to combined decitabine and ipilimumab for advanced myeloid disease. Blood (2023)
Giacomo Oliveira, Catherine J Wu
Dynamics and specificities of T cells in cancer immunotherapy. Nature reviews. Cancer (2023)
Francisco Hermida-Prado, Yingtian Xie, Shira Sherman, Zsuzsanna Nagy, Douglas Russo, Tara Akhshi, Zhengtao Chu, Avery Feit, Marco Campisi, Minyue Chen, Agostina Nardone, Cristina Guarducci, Klothilda Lim, Alba Font-Tello, Irene I Lee, Juana María García-Pedrero, Israel Cañadas, Judith Agudo, Ying Huang, Tal Sella, Qingchun Jin, Nabihah Tayob, Elizabeth A Mittendorf, Sara M Tolaney, Xintao Qiu, Henry W Long, William Fraser Symmans, Jia-Ren Lin, Sandro Santagata, Isabelle Bedrosian, Denise A Yardley, Ingrid A Mayer, Edward T Richardson, Giacomo Oliveira, Catherine J Wu, Eugene F Schuster, Mitchell Dowsett, Alana L Welm, David A Barbie, Otto Metzger Filho, Rinath M Jeselsohn
Endocrine therapy synergizes with SMAC mimetics to potentiate antigen presentation and tumor regression in hormone receptor-positive breast cancer. Cancer research (2023)
Antonela Merlotti, Benjamin Sadacca, Yago A Arribas, Mercia Ngoma, Marianne Burbage, Christel Goudot, Alexandre Houy, Ares Rocañín-Arjó, Ana Ines Lalanne, Agathe Seguin-Givelet, Marine Lefevre, Sandrine Heurtebise-Chrétien, Blandine Baudon, Giacomo Oliveira, Damarys Loew, Montserrat Carrascal, Catherine J Wu, Olivier Lantz, Marc-Henri Stern, Nicolas Girard, Joshua J Waterfall, Sebastian Amigorena
Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer. Science immunology 8 (80) (2023)
John-William Sidhom, Giacomo Oliveira, Petra Ross-MacDonald, Megan Wind-Rotolo, Catherine J Wu, Drew M Pardoll, Alexander S Baras
Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy. Science advances 8 (37) (2022)
Giacomo Oliveira, Kari Stromhaug, Nicoletta Cieri, J Bryan Iorgulescu, Susan Klaeger, Jacquelyn O Wolff, Suzanna Rachimi, Vipheaviny Chea, Kate Krause, Samuel S Freeman, Wandi Zhang, Shuqiang Li, David A Braun, Donna S Neuberg, Steven A Carr, Kenneth J Livak, Dennie T Frederick, Edward F Fritsch, Megan Wind-Rotolo, Nir Hacohen, Moshe Sade-Feldman, Charles H Yoon, Derin B Keskin, Patrick A Ott, Scott J Rodig, Genevieve M Boland, Catherine J Wu
Landscape of helper and regulatory antitumour CD4 + T cells in melanoma. Nature 605 (7910) (2022)
Tamara Ouspenskaia, Travis Law, Karl R Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet, Bo Li, Elena Christian, Binyamin Asher Knisbacher, Phuong M Le, Christina R Hartigan, Hasmik Keshishian, Annie Apffel, Giacomo Oliveira, Wandi Zhang, Sarah Chen, Yuen Ting Chow, Zhe Ji, Irwin Jungreis, Sachet A Shukla, Sune Justesen, Pavan Bachireddy, Manolis Kellis, Gad A Getz, Nir Hacohen, Derin B Keskin, Steven A Carr, Catherine J Wu, Aviv Regev
Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer. Nature biotechnology (2021)
Giacomo Oliveira, Kari Stromhaug, Susan Klaeger, Tomasz Kula, Dennie T Frederick, Phuong M Le, Juliet Forman, Teddy Huang, Shuqiang Li, Wandi Zhang, Qikai Xu, Nicoletta Cieri, Karl R Clauser, Sachet A Shukla, Donna S Neuberg, Sune Justesen, Gavin MacBeath, Steven A Carr, Edward F Fritsch, Nir Hacohen, Moshe Sade-Feldman, Kenneth J Livak, Genevieve M Boland, Patrick A Ott, Derin B Keskin, Catherine J Wu
Phenotype, specificity and avidity of antitumour CD8+ T cells in melanoma. Nature 596 (7870) (2021)