Kenneth H Wolfe

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 49

Top Venues

Microbiology resource announcements

PLoS biology

FEMS yeast research

Genome biology and evolution

University College Dublin

Trinity College Dublin (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University College Dublin

Ireland

Professor of Genomic Evolution :: UCD Conway Institute / School of Medicine

Trinity College Dublin

Ireland

Professor of Genome Evolution :: Genetics

Indiana University

United States

Postdoctoral Fellow (Alfred P. Sloan Foundation) :: Biology

Education History

Trinity College Dublin

Ireland

PHD :: Genetics

Publications

Richard William McLaughlin, Conor Hession, Sean Bergin, Aoife Cosgrove, Andrew Dowd, Niall Garvey, Gabrielle Litovskich, Evita Osaigbovo, Denis Popa, Cynthia Thuku, Geraldine Butler, Kenneth H Wolfe, Kevin P Byrne
Genome sequences of two isolates of the yeast Candida zeylanoides : UCD849 from soil in Ireland, and AWD from an African wild dog. Microbiology resource announcements 13 (3) (2024)
Padraic G Heneghan, Adam P Ryan, Eoin Ó Cinnéide, Jordan Davies, Cathal Bracken, Victoria Ogundipe, Maria Doheny, Liam Lenihan, Anastasia Passalaris, Rosalind Walker, Kenneth H Wolfe, Geraldine Butler, Kevin P Byrne
Draft genome sequence of the yeast Schwanniomyces capriottii strain UCD805, isolated from soil in Ireland. Microbiology resource announcements 13 (3) (2024)
Padraic G Heneghan, Adam P Ryan, Eoin Ó Cinnéide, Jordan Davies, Cathal Bracken, Victoria Ogundipe, Maria Doheny, Liam Lenihan, Anastasia Passalaris, Rosalind Walker, Kenneth H Wolfe, Geraldine Butler, Kevin P Byrne
Draft genome sequence of the yeast Schwanniomyces capriottii strain UCD805, isolated from soil in Ireland. Microbiology resource announcements (2024)
Eoin Ó Cinnéide, Caitriona Scaife, Eugène T Dillon, Kenneth H Wolfe
Evolution of the Genetic Code in the Ascoideales (CUG-Ser2) Yeast Clade: The Ancestral tRNA-Leu(CAG) Gene Is Retained in Most Saccharomycopsis Species but Is Nonessential and Not Used for Translation. Genome biology and evolution 16 (8) (2024)
Sean Bergin, Laura A Doorley, Jeffrey M Rybak, Kenneth H Wolfe, Geraldine Butler, Christina A Cuomo, P David Rogers
Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes. Antimicrobial agents and chemotherapy (2024)
Padraic G Heneghan, Adam P Ryan, Eoin Ó Cinnéide, Jordan Davies, Cathal Bracken, Victoria Ogundipe, Maria Doheny, Liam Lenihan, Anastasia Passalaris, Rosalind Walker, Kenneth H Wolfe, Geraldine Butler, Kevin P Byrne
Draft genome sequence of the yeast Schwanniomyces capriottii strain UCD805, isolated from soil in Ireland. Microbiology resource announcements 13 (3) (2024)
Eoin Ó Cinnéide, Caitriona Scaife, Eugène T Dillon, Kenneth H Wolfe
Evolution of the Genetic Code in the Ascoideales (CUG-Ser2) Yeast Clade: The Ancestral tRNA-Leu(CAG) Gene Is Retained in Most Saccharomycopsis Species but Is Nonessential and Not Used for Translation. Genome biology and evolution 16 (8) (2024)
Richard William McLaughlin, Conor Hession, Sean Bergin, Aoife Cosgrove, Andrew Dowd, Niall Garvey, Gabrielle Litovskich, Evita Osaigbovo, Denis Popa, Cynthia Thuku, Geraldine Butler, Kenneth H Wolfe, Kevin P Byrne
Genome sequences of two isolates of the yeast Candida zeylanoides : UCD849 from soil in Ireland, and AWD from an African wild dog. Microbiology resource announcements 13 (3) (2024)
Eoin Ó Cinnéide, Caitriona Scaife, Eugène T Dillon, Kenneth H Wolfe
Evolution of the Genetic Code in the Ascoideales (CUG-Ser2) Yeast Clade: The Ancestral tRNA-Leu(CAG) Gene Is Retained in Most Saccharomycopsis Species but Is Nonessential and Not Used for Translation. Genome biology and evolution 16 (8) (2024)
Sean Bergin, Laura A Doorley, Jeffrey M Rybak, Kenneth H Wolfe, Geraldine Butler, Christina A Cuomo, P David Rogers
Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes. Antimicrobial agents and chemotherapy (2024)
Padraic G Heneghan, Adam P Ryan, Eoin Ó Cinnéide, Jordan Davies, Cathal Bracken, Victoria Ogundipe, Maria Doheny, Liam Lenihan, Anastasia Passalaris, Rosalind Walker, Kenneth H Wolfe, Geraldine Butler, Kevin P Byrne
Draft genome sequence of the yeast Schwanniomyces capriottii strain UCD805, isolated from soil in Ireland. Microbiology resource announcements 13 (3) (2024)
Richard William McLaughlin, Conor Hession, Sean Bergin, Aoife Cosgrove, Andrew Dowd, Niall Garvey, Gabrielle Litovskich, Evita Osaigbovo, Denis Popa, Cynthia Thuku, Geraldine Butler, Kenneth H Wolfe, Kevin P Byrne
Genome sequences of two isolates of the yeast Candida zeylanoides : UCD849 from soil in Ireland, and AWD from an African wild dog. Microbiology resource announcements (2024)
Richard William McLaughlin, Conor Hession, Sean Bergin, Aoife Cosgrove, Andrew Dowd, Niall Garvey, Gabrielle Litovskich, Evita Osaigbovo, Denis Popa, Cynthia Thuku, Geraldine Butler, Kenneth H Wolfe, Kevin P Byrne
Genome sequences of two isolates of the yeast Candida zeylanoides : UCD849 from soil in Ireland, and AWD from an African wild dog. Microbiology resource announcements 13 (3) (2024)
Eoin Ó Cinnéide, Caitriona Scaife, Eugene Dillon, Kenneth H Wolfe
Evolution of the genetic code in the Ascoideales (CUG-Ser2) yeast clade: The ancestral tRNA-Leu(CAG) gene is retained in most Saccharomycopsis species but is non-essential and not used for translation. Genome biology and evolution (2024)
Sean Bergin, Laura A Doorley, Jeffrey M Rybak, Kenneth H Wolfe, Geraldine Butler, Christina A Cuomo, P David Rogers
Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes. bioRxiv : the preprint server for biology (2023)
Sean Bergin, Laura A Doorley, Jeffrey M Rybak, Kenneth H Wolfe, Geraldine Butler, Christina A Cuomo, P David Rogers
Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes. bioRxiv : the preprint server for biology (2023)
Sean Bergin, Laura A Doorley, Jeffrey M Rybak, Kenneth H Wolfe, Geraldine Butler, Christina A Cuomo, P David Rogers
Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes. bioRxiv : the preprint server for biology (2023)
Sean Bergin, Laura A Doorley, Jeffrey M Rybak, Kenneth H Wolfe, Geraldine Butler, Christina A Cuomo, P David Rogers
Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes. bioRxiv : the preprint server for biology (2023)
Letal I Salzberg, Alexandre A R Martos, Lisa Lombardi, Lars S Jermiin, Alfonso Blanco, Kevin P Byrne, Kenneth H Wolfe
A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family. PLoS genetics 18 (11) (2022)
Benjamin Offei, Stephanie Braun-Galleani, Anjan Venkatesh, William T Casey, Kevin E O'Connor, Kevin P Byrne, Kenneth H Wolfe
Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins. PLoS biology 20 (12) (2022)
Aida Don, Kevin P Byrne, Fouz Alqaderi, Alexandra Mazhova, Ben O'Leary Chaney, Sarah Redmond, Stephen Allen, Jiaran Gao, Eoin Ó Cinnéide, Sean A Bergin, Conor Hession, Kenneth H Wolfe, Geraldine Butler
Draft Genome Sequence of the Yeast Blastobotrys aristata Strain UCD613, Isolated from Soil in Ireland. Microbiology resource announcements 11 (11) (2022)
Sean A Bergin, Stephen Allen, Conor Hession, Eoin Ó Cinnéide, Adam Ryan, Kevin P Byrne, Tadhg Ó Cróinín, Kenneth H Wolfe, Geraldine Butler
Identification of European isolates of the lager yeast parent Saccharomyces eubayanus. FEMS yeast research 22 (1) (2022)
Sean A Bergin, Stephen Allen, Conor Hession, Eoin Ó Cinnéide, Adam Ryan, Kevin P Byrne, Tadhg Ó Cróinín, Kenneth H Wolfe, Geraldine Butler
Identification of European isolates of the lager yeast parent Saccharomyces eubayanus. FEMS yeast research 22 (1) (2022)
Kenneth H Wolfe, Geraldine Butler
Mating-Type Switching in Budding Yeasts, from Flip/Flop Inversion to Cassette Mechanisms. Microbiology and molecular biology reviews : MMBR 86 (2) (2022)
Benjamin Offei, Stephanie Braun-Galleani, Anjan Venkatesh, William T Casey, Kevin E O'Connor, Kevin P Byrne, Kenneth H Wolfe
Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins. PLoS biology 20 (12) (2022)
Benjamin Offei, Stephanie Braun-Galleani, Anjan Venkatesh, William T Casey, Kevin E O'Connor, Kevin P Byrne, Kenneth H Wolfe
Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins. PLoS biology 20 (12) (2022)
Sean A Bergin, Fang Zhao, Adam P Ryan, Carolin A Müller, Conrad A Nieduszynski, Bing Zhai, Thierry Rolling, Tobias M Hohl, Florent Morio, Jillian Scully, Kenneth H Wolfe, Geraldine Butler
Systematic Analysis of Copy Number Variations in the Pathogenic Yeast Candida parapsilosis Identifies a Gene Amplification in RTA3 That is Associated with Drug Resistance. mBio 13 (5) (2022)
Blessing Igharo, Kevin P Byrne, Heytham Ghnewa, Ryan P Davey, Athaliah Fubara, Julia Welc, Shafik Oubihi, Luke Moore, Cian Smith, Eoin Ó Cinnéide, Sean A Bergin, Conor Hession, Kenneth H Wolfe, Geraldine Butler
Draft Genome Sequence of the Yeast Torulaspora quercuum Strain UCD657, Isolated from Soil in Ireland. Microbiology resource announcements 11 (11) (2022)
Sean A Bergin, Stephen Allen, Conor Hession, Eoin Ó Cinnéide, Adam Ryan, Kevin P Byrne, Tadhg Ó Cróinín, Kenneth H Wolfe, Geraldine Butler
Identification of European isolates of the lager yeast parent Saccharomyces eubayanus. FEMS yeast research 22 (1) (2022)
Sean A Bergin, Stephen Allen, Conor Hession, Eoin Ó Cinnéide, Adam Ryan, Kevin P Byrne, Tadhg Ó Cróinín, Kenneth H Wolfe, Geraldine Butler
Identification of European isolates of the lager yeast parent Saccharomyces eubayanus. FEMS yeast research 22 (1) (2022)
Benjamin Offei, Stephanie Braun-Galleani, Anjan Venkatesh, William T Casey, Kevin E O'Connor, Kevin P Byrne, Kenneth H Wolfe
Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins. PLoS biology 20 (12) (2022)
Sean A Bergin, Stephen Allen, Conor Hession, Eoin Ó Cinnéide, Adam Ryan, Kevin P Byrne, Tadhg Ó Cróinín, Kenneth H Wolfe, Geraldine Butler
Identification of European isolates of the lager yeast parent Saccharomyces eubayanus. FEMS yeast research 22 (1) (2022)
Sara J Hanson, Eoin Ó Cinnéide, Letal I Salzberg, Kenneth H Wolfe, Jamie McGowan, David A Fitzpatrick, Kate Matlin
Genomic diversity, chromosomal rearrangements, and interspecies hybridization in the Ogataea polymorpha species complex. G3 (Bethesda, Md.) 11 (8) (2022)
Benjamin Offei, Stephanie Braun-Galleani, Anjan Venkatesh, William T Casey, Kevin E O'Connor, Kevin P Byrne, Kenneth H Wolfe
Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins. PLoS biology 20 (12) (2022)
Mihaela Ola, Caoimhe E O'Brien, Aisling Y Coughlan, Qinxi Ma, Paul D Donovan, Kenneth H Wolfe, Geraldine Butler
Polymorphic centromere locations in the pathogenic yeast Candida parapsilosis. Genome research 30 (5) (2020)
Aisling Y Coughlan, Lisa Lombardi, Stephanie Braun-Galleani, Alexandre Ar Martos, Virginie Galeote, Frédéric Bigey, Sylvie Dequin, Kevin P Byrne, Kenneth H Wolfe
The yeast mating-type switching endonuclease HO is a domesticated member of an unorthodox homing genetic element family. eLife 9 (2020)
Dahao Feng, Anton Stoyanov, Juliana C Olliff, Kenneth H Wolfe, Kantcho Lahtchev, Sara J Hanson
Carbon source requirements for mating and mating-type switching in the methylotrophic yeasts Ogataea (Hansenula) polymorpha and Komagataella phaffii (Pichia pastoris). Yeast (Chichester, England) 37 (2) (2020)
Anjan Venkatesh, Anthony L Murray, Aisling Y Coughlan, Kenneth H Wolfe
Giant GAL gene clusters for the melibiose-galactose pathway in Torulaspora. Yeast (Chichester, England) 38 (1) (2020)
Alexander P Douglass, Caoimhe E O'Brien, Benjamin Offei, Aisling Y Coughlan, Raul A Ortiz-Merino, Geraldine Butler, Kevin P Byrne, Kenneth H Wolfe
Coverage-Versus-Length Plots, a Simple Quality Control Step for de Novo Yeast Genome Sequence Assemblies. G3 (Bethesda, Md.) 9 (3) (2019)
Aisling Y Coughlan, Kenneth H Wolfe
The reported point centromeres of Scheffersomyces stipitis are retrotransposon long terminal repeats. Yeast (Chichester, England) 36 (5) (2019)
Stephanie Braun-Galleani, Julie A Dias, Aisling Y Coughlan, Adam P Ryan, Kevin P Byrne, Kenneth H Wolfe
Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris). Microbial cell factories 18 (1) (2019)
William Palmer-Brown, Raúl Miranda-CasoLuengo, Kenneth H Wolfe, Kevin P Byrne, Cormac D Murphy
The CYPome of the model xenobiotic-biotransforming fungus Cunninghamella elegans. Scientific reports 9 (1) (2019)
Ines A Drinnenberg, Frederic Berger, Simon J Elsässer, Peter R Andersen, Juan Ausió, Wendy A Bickmore, Alexander R Blackwell, Douglas H Erwin, James M Gahan, Brandon S Gaut, Zachary H Harvey, Steven Henikoff, Joyce Y Kao, Siavash K Kurdistani, Bernardo Lemos, Mia T Levine, Karolin Luger, Harmit S Malik, José M Martín-Durán, Catherine L Peichel, Marilyn B Renfree, Kinga Rutowicz, Peter Sarkies, Robert J Schmitz, Ulrich Technau, Joseph W Thornton, Tobias Warnecke, Kenneth H Wolfe
EvoChromo: towards a synthesis of chromatin biology and evolution. Development (Cambridge, England) 146 (19) (2019)
Alexander P Douglass, Benjamin Offei, Stephanie Braun-Galleani, Aisling Y Coughlan, Alexandre A R Martos, Raul A Ortiz-Merino, Kevin P Byrne, Kenneth H Wolfe
Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names. PLoS pathogens 14 (7) (2018)
Tadeusz Krassowski, Aisling Y Coughlan, Xing-Xing Shen, Xiaofan Zhou, Jacek Kominek, Dana A Opulente, Robert Riley, Igor V Grigoriev, Nikunj Maheshwari, Denis C Shields, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas, Kenneth H Wolfe
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. Nature communications 9 (1) (2018)
Paul D Donovan, Linda M Holland, Lisa Lombardi, Aisling Y Coughlan, Desmond G Higgins, Kenneth H Wolfe, Geraldine Butler
TPP riboswitch-dependent regulation of an ancient thiamin transporter in Candida. PLoS genetics 14 (5) (2018)
Sara J Hanson, Kevin P Byrne, Kenneth H Wolfe
Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway. PLoS genetics 13 (11) (2017)
Raúl A Ortiz-Merino, Nurzhan Kuanyshev, Stephanie Braun-Galleani, Kevin P Byrne, Danilo Porro, Paola Branduardi, Kenneth H Wolfe
Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch. PLoS biology 15 (5) (2017)
Markus S Schröder, Kontxi Martinez de San Vicente, Tâmara H R Prandini, Stephen Hammel, Desmond G Higgins, Eduardo Bagagli, Kenneth H Wolfe, Geraldine Butler
Multiple Origins of the Pathogenic Yeast Candida orthopsilosis by Separate Hybridizations between Two Parental Species. PLoS genetics 12 (11) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Kenneth H Wolfe