BMC structural biology

Keyphrases

Publications

volume 19, number 1, 2019

Takumi Shimomura, Kohki Nishijima, Takeshi Kikuchi
A new technique for predicting intrinsically disordered regions based on average distance map constructed with inter-residue average distance statistics. BMC structural biology 19 (1) (2019)
Alebachew Messele Kebede, Fitsum Girma Tadesse, Adey Desta Feleke, Lemu Golassa, Endalamaw Gadisa
Effect of low complexity regions within the PvMSP3α block II on the tertiary structure of the protein and implications to immune escape mechanisms. BMC structural biology 19 (1) (2019)
Weijie Zhou, Andrew Tsai, Devon A Dattmore, Devin P Stives, Iva Chitrakar, Alexis M D'alessandro, Shiv Patil, Katherine A Hicks, Jarrod B French
Crystal structure of E. coli PRPP synthetase. BMC structural biology 19 (1) (2019)
Hiral M Sanghavi, Sairam S Mallajosyula, Sharmistha Majumdar
Correction to: Classification of the human THAP protein family identifies an evolutionarily conserved coiled coil region. BMC structural biology 19 (1) (2019)
Hiral M Sanghavi, Sairam S Mallajosyula, Sharmistha Majumdar
Classification of the human THAP protein family identifies an evolutionarily conserved coiled coil region. BMC structural biology 19 (1) (2019)
Cayro de Macêdo Mendes, Diego Gomes Teixeira, João Paulo Matos Santos Lima, Daniel Carlos Ferreira Lanza
Characterization of putative proteins encoded by variable ORFs in white spot syndrome virus genome. BMC structural biology 19 (1) (2019)
Juliusz Stasiewicz, Sunandan Mukherjee, Chandran Nithin, Janusz M Bujnicki
QRNAS: software tool for refinement of nucleic acid structures. BMC structural biology 19 (1) (2019)
Gaurang P Deshpande, Hugh-George Patterton, M Faadiel Essop
The human transketolase-like proteins TKTL1 and TKTL2 are bona fide transketolases. BMC structural biology 19 (1) (2019)

volume 18, number 1, 2018

Manoj Kumar Pal, Tapobrata Lahiri, Garima Tanwar, Rajnish Kumar
An improved protein structure evaluation using a semi-empirically derived structure property. BMC structural biology 18 (1) (2018)
Nopnithi Thonghin, Richard F Collins, Alessandro Barbieri, Talha Shafi, Alistair Siebert, Robert C Ford
Novel features in the structure of P-glycoprotein (ABCB1) in the post-hydrolytic state as determined at 7.9 Å resolution. BMC structural biology 18 (1) (2018)
Jielin Yu, Assen Marintchev
Comparative sequence and structure analysis of eIF1A and eIF1AD. BMC structural biology 18 (1) (2018)
Julio A Kovacs, Vitold E Galkin, Willy Wriggers
Accurate flexible refinement of atomic models against medium-resolution cryo-EM maps using damped dynamics. BMC structural biology 18 (1) (2018)
Anna Verdino, Felicia Zollo, Margherita De Rosa, Annunziata Soriente, Miguel Ángel Hernández-Martínez, Anna Marabotti
Computational analysis of the interactions of a novel cephalosporin derivative with β-lactamases. BMC structural biology 18 (1) (2018)
Simon Houston, Karen Vivien Lithgow, Kara Krista Osbak, Chris Richard Kenyon, Caroline E Cameron
Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis. BMC structural biology 18 (1) (2018)
David B Langley, Daniel Christ
Crystal structure of duck egg lysozyme isoform II (DEL-II). BMC structural biology 18 (1) (2018)
Harmeet Kaur, Neetu Sain, Debasisa Mohanty, Dinakar M Salunke
Deciphering evolution of immune recognition in antibodies. BMC structural biology 18 (1) (2018)
Andreas Kirscht, Yonathan Sonntag, Per Kjellbom, Urban Johanson
A structural preview of aquaporin 8 via homology modeling of seven vertebrate isoforms. BMC structural biology 18 (1) (2018)
Pallabini Dash, M Bala Divya, Lalitha Guruprasad, Kunchur Guruprasad
Three-dimensional models of Mycobacterium tuberculosis proteins Rv1555, Rv1554 and their docking analyses with sildenafil, tadalafil, vardenafil drugs, suggest interference with quinol binding likely to affect protein's function. BMC structural biology 18 (1) (2018)
Jianquan Ouyang, Zezhi Liang, Chunyu Chen, Zhuosong Fu, Yue Zhang, Hongrong Liu
Cryo-electron microscope image denoising based on the geodesic distance. BMC structural biology 18 (1) (2018)
Saara Laulumaa, Tuomo Nieminen, Arne Raasakka, Oda C Krokengen, Anushik Safaryan, Erik I Hallin, Guillaume Brysbaert, Marc F Lensink, Salla Ruskamo, Ilpo Vattulainen, Petri Kursula
Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins. BMC structural biology 18 (1) (2018)
Jeddidiah W D Griffin, Patrick C Bradshaw
In silico prediction of novel residues involved in amyloid primary nucleation of human I56T and D67H lysozyme. BMC structural biology 18 (1) (2018)
Jiří Dostál, Jiří Brynda, Jan Blaha, Stanislav Macháček, Olga Heidingsfeld, Iva Pichová
Crystal structure of carbonic anhydrase CaNce103p from the pathogenic yeast Candida albicans. BMC structural biology 18 (1) (2018)
Kumaraswamy Naidu Chitrala, Xiaoming Yang, Prakash Nagarkatti, Mitzi Nagarkatti
Comparative analysis of interactions between aryl hydrocarbon receptor ligand binding domain with its ligands: a computational study. BMC structural biology 18 (1) (2018)
Muhammad Waseem Sarwar, Adeel Riaz, Syed Muhammad Raihan Dilshad, Ahmed Al-Qahtani, Muhammad Shah Nawaz-Ul-Rehman, Muhammad Mubin
Structure activity relationship (SAR) and quantitative structure activity relationship (QSAR) studies showed plant flavonoids as potential inhibitors of dengue NS2B-NS3 protease. BMC structural biology 18 (1) (2018)
Nikolay A Alemasov, Nikita V Ivanisenko, Srinivasan Ramachandran, Vladimir A Ivanisenko
Correction to: selected articles from Belyaev Conference 2017: structural biology. BMC structural biology 18 (1) (2018)
Gilles Lamothe, Thérèse E Malliavin
re-TAMD: exploring interactions between H3 peptide and YEATS domain using enhanced sampling. BMC structural biology 18 (1) (2018)

volume 18, number Suppl 1, 2018

Nikolay A Alemasov, Nikita V Ivanisenko, Srinivasan Ramachandran, Vladimir A Ivanisenko
Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling. BMC structural biology 18 (Suppl 1) (2018)

volume 17, number 1, 2017

Alexander V Popov, Anton V Endutkin, Yuri N Vorobjev, Dmitry O Zharkov
Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase. BMC structural biology 17 (1) (2017)
Thomas Hoffmann, Antoine Marion, Iris Antes
DynaDom: structure-based prediction of T cell receptor inter-domain and T cell receptor-peptide-MHC (class I) association angles. BMC structural biology 17 (1) (2017)
Charlotte Bouard, Raphael Terreux, Agnès Tissier, Laurent Jacqueroud, Arnaud Vigneron, Stéphane Ansieau, Alain Puisieux, Léa Payen
Destabilization of the TWIST1/E12 complex dimerization following the R154P point-mutation of TWIST1: an in silico approach. BMC structural biology 17 (1) (2017)
Subhomoi Borkotoky, Ayaluru Murali
A computational assessment of pH-dependent differential interaction of T7 lysozyme with T7 RNA polymerase. BMC structural biology 17 (1) (2017)
William R Taylor, Jonathan P Stoye, Ian A Taylor
A comparative analysis of the foamy and ortho virus capsid structures reveals an ancient domain duplication. BMC structural biology 17 (1) (2017)
Hela Abid, Emna Harigua-Souiai, Thouraya Mejri, Mourad Barhoumi, Ikram Guizani
Leishmania infantum 5'-Methylthioadenosine Phosphorylase presents relevant structural divergence to constitute a potential drug target. BMC structural biology 17 (1) (2017)
Hisashi Mizutani, Hideaki Sugawara, Ashley M Buckle, Takeshi Sangawa, Ken-Ichi Miyazono, Jun Ohtsuka, Koji Nagata, Tomoki Shojima, Shohei Nosaki, Yuqun Xu, Delong Wang, Xiao Hu, Masaru Tanokura, Kei Yura
REFOLDdb: a new and sustainable gateway to experimental protocols for protein refolding. BMC structural biology 17 (1) (2017)
Jonas Barandun, Fred F Damberger, Cyrille L Delley, Juerg Laederach, Frédéric H T Allain, Eilika Weber-Ban
Prokaryotic ubiquitin-like protein remains intrinsically disordered when covalently attached to proteasomal target proteins. BMC structural biology 17 (1) (2017)
Dorota Latek
Rosetta Broker for membrane protein structure prediction: concentrative nucleoside transporter 3 and corticotropin-releasing factor receptor 1 test cases. BMC structural biology 17 (1) (2017)

volume 16, number 1, 2016

Haili Lin, Gregers Rom Andersen, Laure Yatime
Crystal structure of human S100A8 in complex with zinc and calcium. BMC structural biology 16 (1) (2016)
Douglas J Marcotte, YuTing Liu, Kevin Little, John H Jones, Noel A Powell, Craig P Wildes, Laura F Silvian, Jayanth V Chodaparambil
Structural determinant for inducing RORgamma specific inverse agonism triggered by a synthetic benzoxazinone ligand. BMC structural biology 16 (1) (2016)
Canan Ozgur, Pemra Doruker, E Demet Akten
Investigation of allosteric coupling in human β2-adrenergic receptor in the presence of intracellular loop 3. BMC structural biology 16 (1) (2016)
Luca Costa, Alexander Andriatis, Martha Brennich, Jean-Marie Teulon, Shu-Wen W Chen, Jean-Luc Pellequer, Adam Round
Combined small angle X-ray solution scattering with atomic force microscopy for characterizing radiation damage on biological macromolecules. BMC structural biology 16 (1) (2016)
Luis Sanchez-Pulido, Laurent Perez, Steffen Kuhn, Isabelle Vernos, Miguel A Andrade-Navarro
The C-terminal domain of TPX2 is made of alpha-helical tandem repeats. BMC structural biology 16 (1) (2016)
Anne D Rocheleau, Thong M Cao, Tait Takitani, Michael R King
Comparison of human and mouse E-selectin binding to Sialyl-Lewis(x). BMC structural biology 16 (1) (2016)
Sumit Handa, Blair G Paul, Jeffery F Miller, David L Valentine, Partho Ghosh
Conservation of the C-type lectin fold for accommodating massive sequence variation in archaeal diversity-generating retroelements. BMC structural biology 16 (1) (2016)
HaJeung Park, Tuan Tran, Jun Hyuck Lee, Hyun Park, Matthew D Disney
Controlled dehydration improves the diffraction quality of two RNA crystals. BMC structural biology 16 (1) (2016)

volume 16, number Suppl 1, 2016

Ishfaq A Sheikh, Muhammad Abu-Elmagd, Rola F Turki, Ghazi A Damanhouri, Mohd A Beg, Mohammed Al-Qahtani
Endocrine disruption: In silico perspectives of interactions of di-(2-ethylhexyl)phthalate and its five major metabolites with progesterone receptor. BMC structural biology 16 (Suppl 1) (2016)
Ishfaq A Sheikh, Muhammad Yasir, Muhammad Abu-Elmagd, Tanveer A Dar, Adel M Abuzenadah, Ghazi A Damanhouri, Mohammed Al-Qahtani, Mohd A Beg
Human sex hormone-binding globulin as a potential target of alternate plasticizers: an in silico study. BMC structural biology 16 (Suppl 1) (2016)

volume 16, 2016

Jamie J Kwan, Logan W Donaldson
A lack of peptide binding and decreased thermostability suggests that the CASKIN2 scaffolding protein SH3 domain may be vestigial. BMC structural biology 16 (2016)
Madhulata Kumari, Subhash Chandra, Neeraj Tiwari, Naidu Subbarao
3D QSAR, pharmacophore and molecular docking studies of known inhibitors and designing of novel inhibitors for M18 aspartyl aminopeptidase of Plasmodium falciparum. BMC structural biology 16 (2016)
Jonathan M Wagner, Sum Chan, Timothy J Evans, Sara Kahng, Jennifer Kim, Mark A Arbing, David Eisenberg, Konstantin V Korotkov
Structures of EccB1 and EccD1 from the core complex of the mycobacterial ESX-1 type VII secretion system. BMC structural biology 16 (2016)
Dimitrios Georgios Kontopoulos, Dimitrios Vlachakis, Georgia Tsiliki, Sofia Kossida
Structuprint: a scalable and extensible tool for two-dimensional representation of protein surfaces. BMC structural biology 16 (2016)