Ali Sina Booeshaghi (A Sina Booeshaghi)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 23

Top Topics

Preterm Infants

Top Venues

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Joseph Matthew Rich, Lambda Moses, Pétur Helgi Einarsson, Kayla C Jackson, Laura Luebbert, Ali Sina Booeshaghi, Sindri Antonsson, Delaney K Sullivan, Nicolas L Bray, Páll Melsted, Lior Pachter
The impact of package selection and versioning on single-cell RNA-seq analysis. bioRxiv : the preprint server for biology (2024)
Kayla C Jackson, Ali Sina Booeshaghi, Ángel Gálvez-Merchán, Lambda Moses, Tara Chari, Alexandra Kim, Lior Pachter
Identification of spatial homogeneous regions in tissues with concordex. bioRxiv : the preprint server for biology (2024)
Ali Sina Booeshaghi, Xi Chen, Lior Pachter
A machine-readable specification for genomics assays. Bioinformatics (Oxford, England) 40 (4) (2024)
Kayla C Jackson, Ali Sina Booeshaghi, Ángel Gálvez-Merchán, Lambda Moses, Tara Chari, Alexandra Kim, Lior Pachter
Identification of spatial homogeneous regions in tissues with concordex. bioRxiv : the preprint server for biology (2024)
Kayla C Jackson, Ali Sina Booeshaghi, Ángel Gálvez-Merchán, Lambda Moses, Tara Chari, Alexandra Kim, Lior Pachter
Identification of spatial homogeneous regions in tissues with concordex. bioRxiv : the preprint server for biology (2024)
Joseph Matthew Rich, Lambda Moses, Pétur Helgi Einarsson, Kayla C Jackson, Laura Luebbert, Ali Sina Booeshaghi, Sindri Antonsson, Delaney K Sullivan, Nicolas L Bray, Páll Melsted, Lior Pachter
The impact of package selection and versioning on single-cell RNA-seq analysis. bioRxiv : the preprint server for biology (2024)
Ali Sina Booeshaghi, Xi Chen, Lior Pachter
A machine-readable specification for genomics assays. Bioinformatics (Oxford, England) 40 (4) (2024)
Ali Sina Booeshaghi, Xi Chen, Lior Pachter
A machine-readable specification for genomics assays. Bioinformatics (Oxford, England) 40 (4) (2024)
Joseph Matthew Rich, Lambda Moses, Pétur Helgi Einarsson, Kayla C Jackson, Laura Luebbert, Ali Sina Booeshaghi, Sindri Antonsson, Delaney K Sullivan, Nicolas L Bray, Páll Melsted, Lior Pachter
The impact of package selection and versioning on single-cell RNA-seq analysis. bioRxiv : the preprint server for biology (2024)
Lambda Moses, Pétur Helgi Einarsson, Kayla C Jackson, Laura Luebbert, Ali Sina Booeshaghi, Sindri Antonsson, Nicolas L Bray, Páll Melsted, Lior Pachter
Voyager: exploratory single-cell genomics data analysis with geospatial statistics. bioRxiv : the preprint server for biology (2023)
Ali Sina Booeshaghi, Kyung Hoi Joseph Min, Jase Gehring, Lior Pachter
Quantifying orthogonal barcodes for sequence census assays. Bioinformatics advances 4 (1) (2023)
Ángel Gálvez-Merchán, Kyung Hoi Joseph Min, Lior Pachter, Ali Sina Booeshaghi
Metadata retrieval from sequence databases with ffq. Bioinformatics (Oxford, England) 39 (1) (2023)
Ángel Gálvez-Merchán, Kyung Hoi Joseph Min, Lior Pachter, Ali Sina Booeshaghi
Metadata retrieval from sequence databases with ffq. Bioinformatics (Oxford, England) 39 (1) (2023)
Ángel Gálvez-Merchán, Kyung Hoi Joseph Min, Lior Pachter, Ali Sina Booeshaghi
Metadata retrieval from sequence databases with ffq. Bioinformatics (Oxford, England) 39 (1) (2023)
Ali Sina Booeshaghi, Xi Chen, Lior Pachter
A machine-readable specification for genomics assays. bioRxiv : the preprint server for biology (2023)
Delaney K Sullivan, Kyung Hoi Joseph Min, Kristján Eldjárn Hjörleifsson, Laura Luebbert, Guillaume Holley, Lambda Moses, Johan Gustafsson, Nicolas L Bray, Harold Pimentel, Ali Sina Booeshaghi, Páll Melsted, Lior Pachter
kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq. bioRxiv : the preprint server for biology (2023)
Ali Sina Booeshaghi, Kyung Hoi Joseph Min, Jase Gehring, Lior Pachter
Quantifying orthogonal barcodes for sequence census assays. Bioinformatics advances 4 (1) (2023)
Ángel Gálvez-Merchán, Kyung Hoi Joseph Min, Lior Pachter, Ali Sina Booeshaghi
Metadata retrieval from sequence databases with ffq. Bioinformatics (Oxford, England) 39 (1) (2023)
Ali Sina Booeshaghi, Eduardo da Veiga Beltrame, Dylan Bannon, Jase Gehring, Lior Pachter
Author Correction: Principles of open source bioinstrumentation applied to the poseidon syringe pump system. Scientific reports 13 (1) (2023)
Ali Sina Booeshaghi, Delaney K Sullivan, Lior Pachter
Universal preprocessing of single-cell genomics data. bioRxiv : the preprint server for biology (2023)
Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S Adkins, Andrew I Aldridge, Seth A Ament, Anna Bartlett, M Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Hector Roux de Bezieux, Tommaso Biancalani, Ali Sina Booeshaghi, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Jonathan Crabtree, Heather H Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L Dougherty, Wayne I Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle G Giglio, Jeff Goldy, Michael J Hawrylycz, Brian R Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta D Lucero, Chongyuan Luo, Anup A Mahurkar, Delissa McMillen, Naeem M Nadaf, Joseph R Nery, Thuc Nghi Nguyen, Sheng-Yong Niu, Vasilis Ntranos, Joshua Orvis, Julia K Osteen, Trangthanh H Pham, António Pinto-Duarte, Olivier Poirion, Sebastian Preissl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline C Rivkin, Kimberly A Smith, Kelly Street, Josef Sulc, Valentine Svensson, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Charles R Vanderburg, Cindy T J van Velthoven, Xinxin Wang, Owen R White, Z Josh Huang, Peter V Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D Welch, Jesse Gillis, Evan Z Macosko, Bing Ren, Joseph R Ecker, Hongkui Zeng, Eran A Mukamel
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature 598 (7879) (2021)
Ali Sina Booeshaghi, Zizhen Yao, Cindy T J van Velthoven, Kimberly A Smith, Bosiljka Tasic, Hongkui Zeng, Lior Pachter
Isoform cell-type specificity in the mouse primary motor cortex. Nature 598 (7879) (2021)
Ali Sina Booeshaghi, Eduardo da Veiga Beltrame, Dylan Bannon, Jase Gehring, Lior Pachter
Principles of open source bioinstrumentation applied to the poseidon syringe pump system. Scientific reports 9 (1) (2019)