Tommaso Biancalani

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 12

Top Topics

Idiopathic Pulmonary Fibrosis

Single Molecule

Top Venues

Nature biotechnology

Scientific data

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Colin A Grambow, Hayley Weir, Christian N Cunningham, Tommaso Biancalani, Kangway V Chuang
CREMP: Conformer-rotamer ensembles of macrocyclic peptides for machine learning. Scientific data 11 (1) (2024)
Koseki J Kobayashi-Kirschvink, Charles S Comiter, Shreya Gaddam, Taylor Joren, Emanuelle I Grody, Johain R Ounadjela, Ke Zhang, Baoliang Ge, Jeon Woong Kang, Ramnik J Xavier, Peter T C So, Tommaso Biancalani, Jian Shu, Aviv Regev
Prediction of single-cell RNA expression profiles in live cells by Raman microscopy with Raman2RNA. Nature biotechnology (2024)
Koseki J Kobayashi-Kirschvink, Charles S Comiter, Shreya Gaddam, Taylor Joren, Emanuelle I Grody, Johain R Ounadjela, Ke Zhang, Baoliang Ge, Jeon Woong Kang, Ramnik J Xavier, Peter T C So, Tommaso Biancalani, Jian Shu, Aviv Regev
Prediction of single-cell RNA expression profiles in live cells by Raman microscopy with Raman2RNA. Nature biotechnology (2024)
Koseki J Kobayashi-Kirschvink, Charles S Comiter, Shreya Gaddam, Taylor Joren, Emanuelle I Grody, Johain R Ounadjela, Ke Zhang, Baoliang Ge, Jeon Woong Kang, Ramnik J Xavier, Peter T C So, Tommaso Biancalani, Jian Shu, Aviv Regev
Prediction of single-cell RNA expression profiles in live cells by Raman microscopy with Raman2RNA. Nature biotechnology (2024)
Koseki J Kobayashi-Kirschvink, Charles S Comiter, Shreya Gaddam, Taylor Joren, Emanuelle I Grody, Johain R Ounadjela, Ke Zhang, Baoliang Ge, Jeon Woong Kang, Ramnik J Xavier, Peter T C So, Tommaso Biancalani, Jian Shu, Aviv Regev
Prediction of single-cell RNA expression profiles in live cells by Raman microscopy with Raman2RNA. Nature biotechnology (2024)
Colin A Grambow, Hayley Weir, Christian N Cunningham, Tommaso Biancalani, Kangway V Chuang
CREMP: Conformer-rotamer ensembles of macrocyclic peptides for machine learning. Scientific data 11 (1) (2024)
Koseki J Kobayashi-Kirschvink, Charles S Comiter, Shreya Gaddam, Taylor Joren, Emanuelle I Grody, Johain R Ounadjela, Ke Zhang, Baoliang Ge, Jeon Woong Kang, Ramnik J Xavier, Peter T C So, Tommaso Biancalani, Jian Shu, Aviv Regev
Prediction of single-cell RNA expression profiles in live cells by Raman microscopy with Raman2RNA. Nature biotechnology (2024)
Toru Nakata, Chenhao Li, Toufic Mayassi, Helen Lin, Koushik Ghosh, Åsa Segerstolpe, Emma L Diamond, Paula Herbst, Tommaso Biancalani, Shreya Gaddam, Saurabh Parkar, Ziqing Lu, Alok Jaiswal, Bihua Li, Elizabeth A Creasey, Ariel Lefkovith, Mark J Daly, Daniel B Graham, Ramnik J Xavier
Genetic vulnerability to Crohn's disease reveals a spatially resolved epithelial restitution program. Science translational medicine 15 (719) (2023)
Eran Hodis, Elena Torlai Triglia, John Y H Kwon, Tommaso Biancalani, Labib R Zakka, Saurabh Parkar, Jan-Christian Hütter, Lorenzo Buffoni, Toni Marie Delorey, Devan Phillips, Danielle Dionne, Lan T Nguyen, Denis Schapiro, Zoltan Maliga, Connor A Jacobson, Ayal Hendel, Orit Rozenblatt-Rosen, Martin C Mihm, Levi A Garraway, Aviv Regev
Stepwise-edited, human melanoma models reveal mutations' effect on tumor and microenvironment. Science (New York, N.Y.) 376 (6592) (2022)
Tommaso Biancalani, Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger, Neriman Tokcan, Charles R Vanderburg, Åsa Segerstolpe, Meng Zhang, Inbal Avraham-Davidi, Sanja Vickovic, Mor Nitzan, Sai Ma, Ayshwarya Subramanian, Michal Lipinski, Jason Buenrostro, Nik Bear Brown, Duccio Fanelli, Xiaowei Zhuang, Evan Z Macosko, Aviv Regev
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram. Nature methods 18 (11) (2021)
Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S Adkins, Andrew I Aldridge, Seth A Ament, Anna Bartlett, M Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Hector Roux de Bezieux, Tommaso Biancalani, Ali Sina Booeshaghi, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Jonathan Crabtree, Heather H Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L Dougherty, Wayne I Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle G Giglio, Jeff Goldy, Michael J Hawrylycz, Brian R Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta D Lucero, Chongyuan Luo, Anup A Mahurkar, Delissa McMillen, Naeem M Nadaf, Joseph R Nery, Thuc Nghi Nguyen, Sheng-Yong Niu, Vasilis Ntranos, Joshua Orvis, Julia K Osteen, Trangthanh H Pham, António Pinto-Duarte, Olivier Poirion, Sebastian Preissl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline C Rivkin, Kimberly A Smith, Kelly Street, Josef Sulc, Valentine Svensson, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Charles R Vanderburg, Cindy T J van Velthoven, Xinxin Wang, Owen R White, Z Josh Huang, Peter V Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D Welch, Jesse Gillis, Evan Z Macosko, Bing Ren, Joseph R Ecker, Hongkui Zeng, Eran A Mukamel
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature 598 (7879) (2021)
Daniela Di Bella, Ehsan Habibi, Robert R Stickels, Gabriele Scalia, Juliana Brown, Payman Yadollahpour, Sung Min Yang, Catherine Abbate, Tommaso Biancalani, Evan Z Macosko, Fei Chen, Aviv Regev, Paola Arlotta
Molecular logic of cellular diversification in the mouse cerebral cortex. Nature 595 (7868) (2021)