Peter V Kharchenko (P Kharchenko)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 33

Top Venues

Nature communications

Genome biology

Nature cell biology

Nature

This page only lists publications with an associated author ORCID identifier.

Publications

Yida Zhang, Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V Kharchenko
Gene panel selection for targeted spatial transcriptomics. Genome biology 25 (1) (2024)
Yida Zhang, Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V Kharchenko
Gene panel selection for targeted spatial transcriptomics. Genome biology 25 (1) (2024)
Yida Zhang, Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V Kharchenko
Gene panel selection for targeted spatial transcriptomics. Genome biology 25 (1) (2024)
Yida Zhang, Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V Kharchenko
Gene panel selection for targeted spatial transcriptomics. Genome biology 25 (1) (2024)
Yida Zhang, Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V Kharchenko
Gene panel selection for targeted spatial transcriptomics. Genome biology 25 (1) (2024)
Yida Zhang, Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V Kharchenko
Gene panel selection for targeted spatial transcriptomics. Genome biology 25 (1) (2024)
Aaron J Huebner, Rebecca A Gorelov, Ruslan Deviatiiarov, Samuel Demharter, Tobias Kull, Ryan M Walsh, Martin S Taylor, Simon Steiger, John T Mullen, Peter V Kharchenko, Konrad Hochedlinger
Dissection of gastric homeostasis in vivo facilitates permanent capture of isthmus-like stem cells in vitro. Nature cell biology (2023)
Taghreed Hirz, Shenglin Mei, Hirak Sarkar, Youmna Kfoury, Shulin Wu, Bronte M Verhoeven, Alexander O Subtelny, Dimitar V Zlatev, Matthew W Wszolek, Keyan Salari, Evan Murray, Fei Chen, Evan Z Macosko, Chin-Lee Wu, David T Scadden, Douglas M Dahl, Ninib Baryawno, Philip J Saylor, Peter V Kharchenko, David Brian Sykes
Dissecting the immune suppressive human prostate tumor microenvironment via integrated single-cell and spatial transcriptomic analyses. Nature communications 14 (1) (2023)
Blue B Lake, Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira, Kian Kalhor, Daria Barwinska, Edgar A Otto, Michael Ferkowicz, Dinh Diep, Nongluk Plongthongkum, Amanda Knoten, Sarah Urata, Laura H Mariani, Abhijit S Naik, Sean Eddy, Bo Zhang, Yan Wu, Diane Salamon, James C Williams, Xin Wang, Karol S Balderrama, Paul J Hoover, Evan Murray, Jamie L Marshall, Teia Noel, Anitha Vijayan, Austin Hartman, Fei Chen, Sushrut S Waikar, Sylvia E Rosas, Francis Perry Wilson, Susan T Crowley, Krzysztof Kiryluk, John R Sedor, Robert D Toto, Chirag R Parikh, Eric H Kim, Rahul Satija, Anna Greka, Evan Z Macosko, Peter V Kharchenko, Joseph P Gaut, Jeffrey B Hodgin, null null, Michael T Eadon, Pierre C Dagher, Tarek M El-Achkar, Kun Zhang, Matthias Kretzler, Sanjay Jain
An atlas of healthy and injured cell states and niches in the human kidney. Nature 619 (7970) (2023)
Taghreed Hirz, Shenglin Mei, Hirak Sarkar, Youmna Kfoury, Shulin Wu, Bronte M Verhoeven, Alexander O Subtelny, Dimitar V Zlatev, Matthew W Wszolek, Keyan Salari, Evan Murray, Fei Chen, Evan Z Macosko, Chin-Lee Wu, David T Scadden, Douglas M Dahl, Ninib Baryawno, Philip J Saylor, Peter V Kharchenko, David Brian Sykes
Dissecting the immune suppressive human prostate tumor microenvironment via integrated single-cell and spatial transcriptomic analyses. Nature communications 14 (1) (2023)
Aaron J Huebner, Rebecca A Gorelov, Ruslan Deviatiiarov, Samuel Demharter, Tobias Kull, Ryan M Walsh, Martin S Taylor, Simon Steiger, John T Mullen, Peter V Kharchenko, Konrad Hochedlinger
Dissection of gastric homeostasis in vivo facilitates permanent capture of isthmus-like stem cells in vitro. Nature cell biology 25 (3) (2023)
Yida Zhang, Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V Kharchenko
Gene panel selection for targeted spatial transcriptomics. bioRxiv : the preprint server for biology (2023)
Taghreed Hirz, Shenglin Mei, Hirak Sarkar, Youmna Kfoury, Shulin Wu, Bronte M Verhoeven, Alexander O Subtelny, Dimitar V Zlatev, Matthew W Wszolek, Keyan Salari, Evan Murray, Fei Chen, Evan Z Macosko, Chin-Lee Wu, David T Scadden, Douglas M Dahl, Ninib Baryawno, Philip J Saylor, Peter V Kharchenko, David Brian Sykes
Dissecting the immune suppressive human prostate tumor microenvironment via integrated single-cell and spatial transcriptomic analyses. Nature communications 14 (1) (2023)
Teng Gao, Maria Eleni Kastriti, Viktor Ljungström, Andreas Heinzel, Arthur S Tischler, Rainer Oberbauer, Po-Ru Loh, Igor Adameyko, Peter J Park, Peter V Kharchenko
A pan-tissue survey of mosaic chromosomal alterations in 948 individuals. Nature genetics (2023)
Aaron J Huebner, Rebecca A Gorelov, Ruslan Deviatiiarov, Samuel Demharter, Tobias Kull, Ryan M Walsh, Martin S Taylor, Simon Steiger, John T Mullen, Peter V Kharchenko, Konrad Hochedlinger
Dissection of gastric homeostasis in vivo facilitates permanent capture of isthmus-like stem cells in vitro. Nature cell biology 25 (3) (2023)
Taghreed Hirz, Shenglin Mei, Hirak Sarkar, Youmna Kfoury, Shulin Wu, Bronte M Verhoeven, Alexander O Subtelny, Dimitar V Zlatev, Matthew W Wszolek, Keyan Salari, Evan Murray, Fei Chen, Evan Z Macosko, Chin-Lee Wu, David T Scadden, Douglas M Dahl, Ninib Baryawno, Philip J Saylor, Peter V Kharchenko, David Brian Sykes
Dissecting the immune suppressive human prostate tumor microenvironment via integrated single-cell and spatial transcriptomic analyses. Nature communications 14 (1) (2023)
Mykhailo Y Batiuk, Teadora Tyler, Katarina Dragičević, Shenglin Mei, Rasmus Rydbirk, Viktor Petukhov, Ruslan M Deviatiiarov, Dora Sedmak, Erzsebet Frank, Virginia Feher, Nikola Habek, Qiwen Hu, Anna Igolkina, Lilla Roszik, Ulrich Pfisterer, Diego Garcia-Gonzalez, Zdravko Petanjek, Istvan Adorjan, Peter V Kharchenko, Konstantin Khodosevich
Upper cortical layer-driven network impairment in schizophrenia. Science advances 8 (41) (2022)
Teng Gao, Ruslan Soldatov, Hirak Sarkar, Adam Kurkiewicz, Evan Biederstedt, Po-Ru Loh, Peter V Kharchenko
Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes. Nature biotechnology (2022)
Vladimir B Seplyarskiy, Ruslan A Soldatov, Evan M Koch, Ryan J McGinty, Jakob M Goldmann, Ryan D Hernandez, Kathleen Barnes, Adolfo Correa, Esteban González Burchard, Patrick T Ellinor, Stephen T McGarvey, Braxton D Mitchell, Ramachandran S Vasan, Susan Redline, Edwin K Silverman, Scott T Weiss, Donna K Arnett, John Blangero, Eric Boerwinkle, Jiang He, Courtney G Montgomery, D C Rao, Jerome I Rotter, Kent D Taylor, Jennifer A Brody, Yii-Der Ida Chen, Lisa de Las Fuentes, Chii-Min Hwa, Stephen S Rich, Ani W Manichaikul, Josyf C Mychaleckyi, Nicholette D D Allred, Jennifer A Smith, Sharon L R Kardia, Patricia A Peyser, Lawrence F Bielak, Timothy D O'Connor, Leslie S Emery, null null, null null, Christian Gilissen, Wendy S W Wong, Peter V Kharchenko, Shamil R Sunyaev
Population sequencing data reveal a compendium of mutational processes in the human germ line. Science (New York, N.Y.) 373 (6558) (2021)
Pavan Bachireddy, Christina Ennis, Vinhkhang N Nguyen, Satyen H Gohil, M Kendell Clement, Sachet A Shukla, Juliet Forman, Nikolaos Barkas, Samuel S Freeman, Natalie Bavli, Liudmila Elagina, Ignaty Leshchiner, Arman W Mohammad, Nathan D Mathewson, Derin B Keskin, Laura Z Rassenti, Thomas J Kipps, Jennifer R Brown, Gad A Getz, Vincent T Ho, Andreas Gnirke, Donna S Neuberg, Robert J Soiffer, Jerome Ritz, Edwin P Alyea, Peter V Kharchenko, Catherine J Wu
Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to the graft-versus-leukemia effect. Science translational medicine 12 (561) (2021)
Trygve E Bakken, Nikolas L Jorstad, Qiwen Hu, Blue B Lake, Wei Tian, Brian E Kalmbach, Megan Crow, Rebecca D Hodge, Fenna M Krienen, Staci A Sorensen, Jeroen Eggermont, Zizhen Yao, Brian D Aevermann, Andrew I Aldridge, Anna Bartlett, Darren Bertagnolli, Tamara Casper, Rosa G Castanon, Kirsten Crichton, Tanya L Daigle, Rachel Dalley, Nick Dee, Nikolai C Dembrow, Dinh Diep, Song-Lin Ding, Weixiu Dong, Rongxin Fang, Stephan Fischer, Melissa Goldman, Jeff Goldy, Lucas T Gray, Brian R Herb, Xiaomeng Hou, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Baldur van Lew, Yang Eric Li, Christine S Liu, Hanqing Liu, Jacinta D Lucero, Anup A Mahurkar, Delissa McMillen, Jeremy A Miller, Marmar Moussa, Joseph R Nery, Philip R Nicovich, Sheng-Yong Niu, Joshua Orvis, Julia K Osteen, Scott Owen, Carter R Palmer, Trangthanh H Pham, Nongluk Plongthongkum, Olivier Poirion, Nora M Reed, Christine Rimorin, Angeline Rivkin, William J Romanow, Adriana E Sedeño-Cortés, Kimberly Siletti, Saroja Somasundaram, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Xinxin Wang, Fangming Xie, Anna Marie Yanny, Renee Zhang, Seth A Ament, M Margarita Behrens, Hector Corrada Bravo, Jerold Chun, Alexander Dobin, Jesse Gillis, Ronna Hertzano, Patrick R Hof, Thomas Höllt, Gregory D Horwitz, C Dirk Keene, Peter V Kharchenko, Andrew L Ko, Boudewijn P F Lelieveldt, Chongyuan Luo, Eran A Mukamel, António Pinto-Duarte, Sebastian Preissl, Aviv Regev, Bing Ren, Richard H Scheuermann, Kimberly A Smith, William J Spain, Owen R White, Christof Koch, Michael J Hawrylycz, Bosiljka Tasic, Evan Z Macosko, Steven A McCarroll, Jonathan T Ting, Hongkui Zeng, Kun Zhang, Guoping Feng, Joseph R Ecker, Sten Linnarsson, Ed S Lein
Comparative cellular analysis of motor cortex in human, marmoset and mouse. Nature 598 (7879) (2021)
Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S Adkins, Andrew I Aldridge, Seth A Ament, Anna Bartlett, M Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Hector Roux de Bezieux, Tommaso Biancalani, Ali Sina Booeshaghi, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Jonathan Crabtree, Heather H Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L Dougherty, Wayne I Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle G Giglio, Jeff Goldy, Michael J Hawrylycz, Brian R Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta D Lucero, Chongyuan Luo, Anup A Mahurkar, Delissa McMillen, Naeem M Nadaf, Joseph R Nery, Thuc Nghi Nguyen, Sheng-Yong Niu, Vasilis Ntranos, Joshua Orvis, Julia K Osteen, Trangthanh H Pham, António Pinto-Duarte, Olivier Poirion, Sebastian Preissl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline C Rivkin, Kimberly A Smith, Kelly Street, Josef Sulc, Valentine Svensson, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Charles R Vanderburg, Cindy T J van Velthoven, Xinxin Wang, Owen R White, Z Josh Huang, Peter V Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D Welch, Jesse Gillis, Evan Z Macosko, Bing Ren, Joseph R Ecker, Hongkui Zeng, Eran A Mukamel
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature 598 (7879) (2021)
O C Bedoya-Reina, W Li, M Arceo, M Plescher, Petra Bullova, H Pui, M Kaucka, Peter V Kharchenko, Tommy Martinsson, J Holmberg, Igor Adameyko, Qiaolin Deng, C Larsson, Carl Christofer Juhlin, Per Kogner, Susanne Schlisio
Single-nuclei transcriptomes from human adrenal gland reveal distinct cellular identities of low and high-risk neuroblastoma tumors. Nature communications 12 (1) (2021)
Polina Kameneva, Artem V Artemov, Maria Eleni Kastriti, Louis Faure, Thale K Olsen, Jörg Otte, Alek Erickson, Bettina Semsch, Emma Rachel Andersson, Michael Ratz, Jonas Frisén, Arthur S Tischler, Ronald R de Krijger, Thibault Bouderlique, Natalia Akkuratova, Maria Vorontsova, Oleg Gusev, Kaj Fried, Erik Sundström, Shenglin Mei, Per Kogner, Ninib Baryawno, Peter V Kharchenko, Igor Adameyko
Single-cell transcriptomics of human embryos identifies multiple sympathoblast lineages with potential implications for neuroblastoma origin. Nature genetics 53 (5) (2021)
Peter V Kharchenko
The triumphs and limitations of computational methods for scRNA-seq. Nature methods 18 (7) (2021)
David Osumi-Sutherland, Chuan Xu, Maria Keays, Adam P Levine, Peter V Kharchenko, Aviv Regev, Ed Lein, Sarah A Teichmann
Cell type ontologies of the Human Cell Atlas. Nature cell biology 23 (11) (2021)
Viktor Petukhov, Rosalind J Xu, Ruslan A Soldatov, Paolo Cadinu, Konstantin Khodosevich, Jeffrey R Moffitt, Peter V Kharchenko
Cell segmentation in imaging-based spatial transcriptomics. Nature biotechnology (2021)
Jan Krivanek, Ruslan A Soldatov, Maria Eleni Kastriti, Tatiana Chontorotzea, Anna Nele Herdina, Julian Petersen, Bara Szarowska, Marie Landova, Veronika Kovar Matejova, Lydie Izakovicova Holla, Ulrike Kuchler, Ivana Vidovic Zdrilic, Anushree Vijaykumar, Anamaria Balic, Pauline Marangoni, Ophir D Klein, Vitor C M Neves, Val Yianni, Paul Thomas Sharpe, Tibor Harkany, Brian D Metscher, Marc Bajénoff, Mina Mina, Kaj Fried, Peter V Kharchenko, Igor Adameyko
Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth. Nature communications 11 (1) (2020)
Ulrich Pfisterer, Viktor Petukhov, Samuel Demharter, Johanna Meichsner, Jonatan J Thompson, Mykhailo Y Batiuk, Andrea Asenjo-Martinez, Navneet A Vasistha, Ashish Thakur, Jens Mikkelsen, Istvan Adorjan, Lars H Pinborg, Tune H Pers, Jakob von Engelhardt, Peter V Kharchenko, Konstantin Khodosevich
Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis. Nature communications 11 (1) (2020)
Ulrich Pfisterer, Viktor Petukhov, Samuel Demharter, Johanna Meichsner, Jonatan J Thompson, Mykhailo Y Batiuk, Andrea Asenjo-Martinez, Navneet A Vasistha, Ashish Thakur, Jens Mikkelsen, Istvan Adorjan, Lars H Pinborg, Tune H Pers, Jakob von Engelhardt, Peter V Kharchenko, Konstantin Khodosevich
Author Correction: Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis. Nature communications 11 (1) (2020)
Nikolaos Barkas, Viktor Petukhov, Daria Nikolaeva, Yaroslav Lozinsky, Samuel Demharter, Konstantin Khodosevich, Peter V Kharchenko
Joint analysis of heterogeneous single-cell RNA-seq dataset collections. Nature methods 16 (8) (2019)
Blue B Lake, Simone Codeluppi, Yun C Yung, Derek Gao, Jerold Chun, Peter V Kharchenko, Sten Linnarsson, Kun Zhang
A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA. Scientific reports 7 (1) (2017)
Jean Fan, Neeraj Salathia, Rui Liu, Gwendolyn E Kaeser, Yun C Yung, Joseph L Herman, Fiona Kaper, Jian-Bing Fan, Kun Zhang, Jerold Chun, Peter V Kharchenko
Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis. Nature methods 13 (3) (2016)

Peter V Kharchenko.css-eqlu8i{font-size:small;padding-left:4px;} (P Kharchenko)

Publication Activity (10 Years)

Top Topics

Top Venues

Peter V Kharchenko (P Kharchenko)