Andrew Ellis Allen (Andy E Allen, Andrew E Allen, A E Allen)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 40

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

ISME communications

The ISME journal

University of California San Diego Scripps Institution of Oceanography

University of Georgia (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Diego Scripps Institution of Oceanography

United States

Associate Professor :: Biology

J. Craig Venter Institute

United States

Professor :: Microbial and Environmental Genomics

Education History

University of Georgia

United States

PHD :: Ecology

Publications

Deepa Rao, Zoltan Fussy, Margaret M Brisbin, Matthew R McIlvin, Dawn M Moran, Andrew Ellis Allen, Michael J Follows, Mak A Saito
Flexible B 12 ecophysiology of Phaeocystis antarctica due to a fusion B 12 -independent methionine synthase with widespread homologues. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
Deepa Rao, Zoltan Fussy, Margaret M Brisbin, Matthew R McIlvin, Dawn M Moran, Andrew Ellis Allen, Michael J Follows, Mak A Saito
Flexible B 12 ecophysiology of Phaeocystis antarctica due to a fusion B 12 -independent methionine synthase with widespread homologues. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
John K Brunson, Monica Thukral, John P Ryan, Clarissa R Anderson, Bethany C Kolody, Chase C James, Francisco P Chavez, Chui Pin Leaw, Ariel J Rabines, Pratap Venepally, Zoltan Fussy, Hong Zheng, Raphael M Kudela, G Jason Smith, Bradley S Moore, Andrew Ellis Allen
Molecular forecasting of domoic acid during a pervasive toxic diatom bloom. Proceedings of the National Academy of Sciences of the United States of America 121 (40) (2024)
Junkai Zhu, Shuangqing Li, Weizhong Chen, Xinde Xu, Xiaoping Wang, Xin-Wei Wang, Jichang Han, Juliette Jouhet, Alberto Amato, Eric Maréchal, Hanhua Hu, Andrew Ellis Allen, Yangmin Gong, Hai-Bo Jiang
Delta-5 elongase knockout reduces docosahexaenoic acid and lipid synthesis and increases heat sensitivity in a diatom. Plant physiology (2024)
Deepa Rao, Zoltan Fussy, Margaret M Brisbin, Matthew R McIlvin, Dawn M Moran, Andrew Ellis Allen, Michael J Follows, Mak A Saito
Flexible B 12 ecophysiology of Phaeocystis antarctica due to a fusion B 12 -independent methionine synthase with widespread homologues. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
Deepa Rao, Zoltan Fussy, Margaret M Brisbin, Matthew R McIlvin, Dawn M Moran, Andrew Ellis Allen, Michael J Follows, Mak A Saito
Flexible B 12 ecophysiology of Phaeocystis antarctica due to a fusion B 12 -independent methionine synthase with widespread homologues. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
Deepa Rao, Zoltan Fussy, Margaret M Brisbin, Matthew R McIlvin, Dawn M Moran, Andrew Ellis Allen, Michael J Follows, Mak A Saito
Flexible B 12 ecophysiology of Phaeocystis antarctica due to a fusion B 12 -independent methionine synthase with widespread homologues. Proceedings of the National Academy of Sciences of the United States of America 121 (6) (2024)
A Zoumplis, B Kolody, D Kaul, H Zheng, P Venepally, D M McKnight, C Takacs-Vesbach, A DeVries, Andrew Ellis Allen
Impact of meltwater flow intensity on the spatiotemporal heterogeneity of microbial mats in the McMurdo Dry Valleys, Antarctica. ISME communications 3 (1) (2023)
Tito D Peña-Montenegro, Sara Kleindienst, Andrew Ellis Allen, A Murat Eren, John P McCrow, Juan D Sánchez-Calderón, Jonathan Arnold, Samantha B Joye
Species-specific responses of marine bacteria to environmental perturbation. ISME communications 3 (1) (2023)
Robert H Lampe, Tyler H Coale, Kiefer O Forsch, Loay J Jabre, Samuel Kekuewa, Erin M Bertrand, Aleš Horák, Miroslav Oborník, Ariel J Rabines, Elden Rowland, Hong Zheng, Andreas J Andersson, Katherine A Barbeau, Andrew Ellis Allen
Short-term acidification promotes diverse iron acquisition and conservation mechanisms in upwelling-associated phytoplankton. Nature communications 14 (1) (2023)
Monica Thukral, Andrew Ellis Allen, Daniel Petras
Publisher Correction: Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics. The ISME journal (2023)
John K Brunson, Monica Thukral, John P Ryan, Clarissa R Anderson, Bethany C Kolody, Chase C James, Francisco P Chavez, Chui Pin Leaw, Ariel J Rabines, Pratap Venepally, Hong Zheng, Raphael M Kudela, G Jason Smith, Bradley S Moore, Andrew Ellis Allen
Molecular Forecasting of Domoic Acid during a Pervasive Toxic Diatom Bloom. bioRxiv : the preprint server for biology (2023)
A Zoumplis, B Kolody, D Kaul, H Zheng, P Venepally, D M McKnight, C Takacs-Vesbach, A DeVries, Andrew Ellis Allen
Impact of meltwater flow intensity on the spatiotemporal heterogeneity of microbial mats in the McMurdo Dry Valleys, Antarctica. ISME communications 3 (1) (2023)
Monica Thukral, Andrew Ellis Allen, Daniel Petras
Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics. The ISME journal (2023)
A Zoumplis, B Kolody, D Kaul, H Zheng, P Venepally, D M McKnight, C Takacs-Vesbach, A DeVries, Andrew Ellis Allen
Impact of meltwater flow intensity on the spatiotemporal heterogeneity of microbial mats in the McMurdo Dry Valleys, Antarctica. ISME communications 3 (1) (2023)
Rachel E Diner, Amy Zimmer-Faust, Emily Cooksey, Sarah Allard, Sho M Kodera, Emily Kunselman, Yash Garodia, Marc P Verhougstraete, Andrew Ellis Allen, John Griffith, Jack A Gilbert
Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters. Applied and environmental microbiology (2023)
Lingjie You, Ada Połońska, Katarzyna Jasieniecka-Gazarkiewicz, Fabien Richard, Juliette Jouhet, Eric Maréchal, Antoni Banaś, Hanhua Hu, Yufang Pan, Xiahui Hao, Hu Jin, Andrew Ellis Allen, Alberto Amato, Yangmin Gong
Two plastidial lysophosphatidic acid acyltransferases differentially mediate the biosynthesis of membrane lipids and triacylglycerols in Phaeodactylum tricornutum. The New phytologist (2023)
Bethany C Kolody, S R Smith, Lisa Zeigler Allen, J P McCrow, A Moustafa, Dalin Shi, B M Hopkinson, F M M Morel, Bess B Ward, Andrew Ellis Allen
Nitrogen and Iron Availability Drive Metabolic Remodeling and Natural Selection of Diverse Phytoplankton during Experimental Upwelling. mSystems 7 (5) (2022)
Elena Kazamia, Jan Mach, Jeffrey B McQuaid, Xia Gao, Tyler H Coale, Ronald Malych, Jean-Michel Camadro, Emmanuel Lesuisse, Andrew Ellis Allen, Chris Bowler, Robert Sutak
In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in Phaeodactylum tricornutum . Plant direct 6 (12) (2022)
Chase C James, Andrew D Barton, Lisa Zeigler Allen, Robert H Lampe, Ariel Rabines, Anne Schulberg, Hong Zheng, Ralf Goericke, Kelly D Goodwin, Andrew Ellis Allen
Publisher Correction: Influence of nutrient supply on plankton microbiome biodiversity and distribution in a coastal upwelling region. Nature communications 13 (1) (2022)
Riss M Kellogg, Mark A Moosburner, Natalie R Cohen, Nicholas J Hawco, Matthew R McIlvin, Dawn M Moran, Giacomo R DiTullio, Adam V Subhas, Andrew Ellis Allen, Mak A Saito
Adaptive responses of marine diatoms to zinc scarcity and ecological implications. Nature communications 13 (1) (2022)
Anna A Hippmann, Nina Schuback, Kyung-Mee Moon, John P McCrow, Andrew Ellis Allen, Leonard J Foster, Beverley R Green, Maria T Maldonado
Proteomic analysis of metabolic pathways supports chloroplast-mitochondria cross-talk in a Cu-limited diatom. Plant direct 6 (1) (2022)
Chase C James, Andrew D Barton, Lisa Zeigler Allen, Robert H Lampe, Ariel Rabines, Anne Schulberg, Hong Zheng, Ralf Goericke, Kelly D Goodwin, Andrew Ellis Allen
Influence of nutrient supply on plankton microbiome biodiversity and distribution in a coastal upwelling region. Nature communications 13 (1) (2022)
Elena Kazamia, Jan Mach, Jeffrey B McQuaid, Xia Gao, Tyler H Coale, Ronald Malych, Jean-Michel Camadro, Emmanuel Lesuisse, Andrew Ellis Allen, Chris Bowler, Robert Sutak
In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in Phaeodactylum tricornutum . Plant direct 6 (12) (2022)
Loay J Jabre, Andrew Ellis Allen, J Scott P McCain, John P McCrow, Nancy Tenenbaum, Jenna L Spackeen, Rachel E Sipler, Beverley R Green, Deborah A Bronk, David A Hutchins, Erin M Bertrand
Molecular underpinnings and biogeochemical consequences of enhanced diatom growth in a warming Southern Ocean. Proceedings of the National Academy of Sciences of the United States of America 118 (30) (2021)
J Scott P McCain, Alessandro Tagliabue, Edward Susko, Eric Pieter Achterberg, Andrew Ellis Allen, Erin M Bertrand
Cellular costs underpin micronutrient limitation in phytoplankton. Science advances 7 (32) (2021)
Jernej Turnšek, John K Brunson, Maria Del Pilar Martinez Viedma, Thomas J Deerinck, Aleš Horák, Miroslav Oborník, Vincent A Bielinski, Andrew Ellis Allen
Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway. eLife 10 (2021)
Daniel Petras, Vanessa V Phelan, Deepa Acharya, Andrew Ellis Allen, Allegra T Aron, Nuno Bandeira, Benjamin P Bowen, Deirdre Belle-Oudry, Simon Boecker, Dale A Cummings, Jessica M Deutsch, Eoin Fahy, Neha Garg, Rachel Gregor, Jo Handelsman, Mirtha Navarro-Hoyos, Alan K Jarmusch, Scott Alexander Jarmusch, Katherine Louie, Katherine N Maloney, Michael Thomas Marty, Michael M Meijler, Itzhak Mizrahi, Rachel L Neve, Trent R Northen, Carlos Molina-Santiago, Morgan Panitchpakdi, Benjamin S Pullman, Aaron W Puri, Robin Schmid, Shankar Subramaniam, Monica Thukral, Felipe Vasquez-Castro, Pieter C Dorrestein, Mingxun Wang
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Nature methods (2021)
John A Breier, Michael V Jakuba, Mak A Saito, Gregory J Dick, Sharon L Grim, Eric W Chan, Matthew R McIlvin, Dawn M Moran, Brianna A Alanis, Andrew Ellis Allen, Christopher L Dupont, Rod Johnson
Revealing ocean-scale biochemical structure with a deep-diving vertical profiling autonomous vehicle. Science robotics 5 (48) (2021)
Drahomíra Faktorová, R Ellen R Nisbet, José A Fernández Robledo, Elena Casacuberta, Lisa Sudek, Andrew Ellis Allen, Manuel Ares, Cristina Aresté, Cecilia Balestreri, Adrian C Barbrook, Patrick Beardslee, Sara Bender, David S Booth, François-Yves Bouget, Chris Bowler, Susana A Breglia, Colin Brownlee, Gertraud Burger, Heriberto Cerutti, Rachele Cesaroni, Miguel A Chiurillo, Thomas Clemente, Duncan B Coles, Jackie L Collier, Elizabeth C Cooney, Kathryn Coyne, Roberto Docampo, Christopher L Dupont, Virginia P Edgcomb, Elin Einarsson, Pía A Elustondo, Fernan Federici, Veronica Freire-Beneitez, Nastasia J Freyria, Kodai Fukuda, Paulo A García, Peter R Girguis, Fatma Gomaa, Sebastian G Gornik, Jian Guo, Vladimír Hampl, Yutaka Hanawa, Esteban R Haro-Contreras, Elisabeth Hehenberger, Andrea Highfield, Yoshihisa Hirakawa, Amanda Hopes, Christopher J Howe, Ian Hu, Jorge Ibañez, Nicholas A T Irwin, Yuu Ishii, Natalia Ewa Janowicz, Adam C Jones, Ambar Kachale, Konomi Fujimura-Kamada, Binnypreet Kaur, Jonathan Z Kaye, Eleanna Kazana, Patrick J Keeling, Nicole King, Lawrence A Klobutcher, Noelia Lander, Imen Lassadi, Zhuhong Li, Senjie Lin, Jean-Claude Lozano, Fulei Luan, Shinichiro Maruyama, Tamara Matute, Cristina Miceli, Jun Minagawa, Mark Moosburner, Sebastián R Najle, Deepak Nanjappa, Isabel C Nimmo, Luke Noble, Anna M G Novák Vanclová, Mariusz Nowacki, Isaac Nuñez, Arnab Pain, Angela Piersanti, Sandra Pucciarelli, Jan Pyrih, Joshua S Rest, Mariana Rius, Deborah Robertson, Albane Ruaud, Iñaki Ruiz-Trillo, Monika A Sigg, Pamela A Silver, Claudio H Slamovits, G Jason Smith, Brittany N Sprecher, Rowena Stern, Estienne C Swart, Anastasios D Tsaousis, Lev M Z Tsypin, Aaron P Turkewitz, Jernej Turnšek, Matus Valach, Valérie Vergé, Peter von Dassow, Tobias von der Haar, Ross F Waller, Lu Wang, Xiaoxue Wen, Glen Wheeler, April Woods, Huan Zhang, Thomas Mock, Alexandra Z Worden, Julius Lukeš
Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature methods 17 (5) (2020)
Marika A Schulhof, Andrew Ellis Allen, Eric E Allen, Natalie Mladenov, John P McCrow, Natalie T Jones, Jessica M Blanton, Hamanda B Cavalheri, Drishti Kaul, Celia C Symons, Jonathan B Shurin
Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location. Molecular ecology 29 (11) (2020)
Denis Jallet, Denghui David Xing, Alexander Hughes, Mark Moosburner, Mark P Simmons, Andrew Ellis Allen, Graham Peers
Mitochondrial fatty acid β-oxidation is required for storage-lipid catabolism in a marine diatom. The New phytologist 228 (3) (2020)
B C Kolody, J P McCrow, L Zeigler Allen, F O Aylward, K M Fontanez, Ahmed Moustafa, M Moniruzzaman, F P Chavez, C A Scholin, Eric E Allen, Alexandra Z Worden, E F Delong, Andrew Ellis Allen
Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The ISME journal 13 (11) (2019)
Tyler H Coale, Mark Moosburner, Aleš Horák, Miroslav Oborník, Katherine A Barbeau, Andrew Ellis Allen
Reduction-dependent siderophore assimilation in a model pennate diatom. Proceedings of the National Academy of Sciences of the United States of America 116 (47) (2019)
Sarah R Smith, Chris L Dupont, James K McCarthy, Jared T Broddrick, Miroslav Oborník, Aleš Horák, Zoltan Fussy, Jaromír Cihlář, Sabrina Kleessen, Hong Zheng, John P McCrow, Kim K Hixson, Wagner L Araújo, Adriano Nunes-Nesi, Alisdair Fernie, Zoran Nikoloski, Bernhard O Palsson, Andrew Ellis Allen
Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. Nature communications 10 (1) (2019)
Miao Wu, J Scott P McCain, Elden Rowland, Rob Middag, Mats Sandgren, Andrew Ellis Allen, Erin M Bertrand
Manganese and iron deficiency in Southern Ocean Phaeocystis antarctica populations revealed through taxon-specific protein indicators. Nature communications 10 (1) (2019)
Achal Rastogi, Uma Maheswari, Richard G Dorrell, Fabio Rocha Jimenez Vieira, Florian Maumus, Adam Kustka, James McCarthy, Andrew Ellis Allen, Paul Kersey, Chris Bowler, Leila Tirichine
Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms. Scientific reports 8 (1) (2018)
Omer Murik, Leila Tirichine, Judit Prihoda, Yann Thomas, Wagner L Araújo, Andrew Ellis Allen, Alisdair R Fernie, Chris Bowler
Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom. The New phytologist 221 (3) (2018)
John K Brunson, Shaun M K McKinnie, Jonathan R Chekan, John P McCrow, Zachary D Miles, Erin M Bertrand, Vincent A Bielinski, Hanna Luhavaya, Miroslav Oborník, G Jason Smith, David A Hutchins, Andrew Ellis Allen, Bradley S Moore
Biosynthesis of the neurotoxin domoic acid in a bloom-forming diatom. Science (New York, N.Y.) 361 (6409) (2018)
James K McCarthy, Sarah R Smith, John P McCrow, Maxine Tan, Hong Zheng, Karen Beeri, Robyn Roth, Christian Lichtle, Ursula Goodenough, Chris P Bowler, Christopher L Dupont, Andrew Ellis Allen
Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom. The Plant cell 29 (8) (2017)

Andrew Ellis Allen.css-eqlu8i{font-size:small;padding-left:4px;} (Andy E Allen, Andrew E Allen, A E Allen)

Publication Activity (10 Years)

Top Topics

Top Venues

Andrew Ellis Allen (Andy E Allen, Andrew E Allen, A E Allen)