Mingxun Wang

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 28

Top Venues

Journal of proteome research

Nature biotechnology

Journal of the American Society for Mass Spectrometry

Analytical chemistry

University of California San Diego (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of California San Diego Oct 01 2010 - Apr 13 2017

United States

PHD :: Computer Science and Engineering

Publications

Mihir Mongia, Tyler M Yasaka, Yudong Liu, Mustafa Guler, Liang Lu, Aditya Bhagwat, Bahar Behsaz, Mingxun Wang, Pieter C Dorrestein, Hosein Mohimani
Fast mass spectrometry search and clustering of untargeted metabolomics data. Nature biotechnology (2024)
Xianghu Wang, Michael Strobel, Allegra T Aron, Vanessa V Phelan, Deepa D Acharya, Christopher J Brown, Ken Clevenger, Jie Hu, Ashley Kretsch, Elizabeth H Mahood, Carla Menegatti, Quanbo Xiong, Mingxun Wang
Network Topology Evaluation and Transitive Alignments for Molecular Networking. Journal of the American Society for Mass Spectrometry (2024)
Mohammad Reza Zare Shahneh, Michael Strobel, Giovanni Andrea Vitale, Christian Geibel, Yasin El Abiead, Neha Garg, Berenike Wagner, Karl Forchhammer, Allegra Aron, Vanessa V Phelan, Daniel Petras, Mingxun Wang
ModiFinder: Tandem Mass Spectral Alignment Enables Structural Modification Site Localization. Journal of the American Society for Mass Spectrometry (2024)
Phanankosi Moyo, Luke Invernizzi, Sephora Mutombo Mianda, Wiehan Rudolph, Andrew W Andayi, Mingxun Wang, Neil R Crouch, Vinesh J Maharaj
Prioritised identification of structural classes of natural products from higher plants in the expedition of antimalarial drug discovery. Natural products and bioprospecting 13 (1) (2023)
Wout Bittremieux, Lev I Levitsky, Matteo Pilz, Timo Sachsenberg, Florian Huber, Mingxun Wang, Pieter C Dorrestein
Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils. Journal of proteome research 22 (2) (2023)
Phanankosi Moyo, Luke Invernizzi, Sephora Mutombo Mianda, Wiehan Rudolph, Andrew W Andayi, Mingxun Wang, Neil R Crouch, Vinesh J Maharaj
Leveraging off higher plant phylogenetic insights for antiplasmodial drug discovery. Natural products and bioprospecting 13 (1) (2023)
Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira da Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, David J Gonzalez, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C Dorrestein
Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation. Nature biotechnology (2023)
Wout Bittremieux, Lev I Levitsky, Matteo Pilz, Timo Sachsenberg, Florian Huber, Mingxun Wang, Pieter C Dorrestein
Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils. Journal of proteome research 22 (2) (2023)
Wout Bittremieux, Lev I Levitsky, Matteo Pilz, Timo Sachsenberg, Florian Huber, Mingxun Wang, Pieter C Dorrestein
Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils. Journal of proteome research (2023)
Paolo Stincone, Abzer K Pakkir Shah, Robin Schmid, Lana G Graves, Stilianos P Lambidis, Ralph R Torres, Shu-Ning Xia, Vidit Minda, Allegra T Aron, Mingxun Wang, Chambers C Hughes, Daniel Petras
Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform. Analytical chemistry (2023)
Wout Bittremieux, Lev I Levitsky, Matteo Pilz, Timo Sachsenberg, Florian Huber, Mingxun Wang, Pieter C Dorrestein
Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils. Journal of proteome research 22 (2) (2023)
Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila Pacheco, Damian Rafal Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Andrew T Chan, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C Dorrestein
Reverse metabolomics for the discovery of chemical structures from humans. Nature (2023)
Gordon T Luu, Michael A Freitas, Itzel Lizama-Chamu, Catherine S McCaughey, Laura M Sanchez, Mingxun Wang
TIMSCONVERT: a workflow to convert trapped ion mobility data to open data formats. Bioinformatics (Oxford, England) 38 (16) (2022)
Jun Sang Yu, Louis-Félix Nothias, Mingxun Wang, Dong Hyun Kim, Pieter C Dorrestein, Kyo-Bin Kang, Hye-Hyun Yoo
Tandem Mass Spectrometry Molecular Networking as a Powerful and Efficient Tool for Drug Metabolism Studies. Analytical chemistry 94 (2) (2022)
Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira da Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, David J Gonzalez, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C Dorrestein
Enhancing untargeted metabolomics using metadata-based source annotation. Nature biotechnology (2022)
Tiago F Leão, Mingxun Wang, Ricardo R da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender Portal Gomes, Asker Daniel Brejnrod, Evgenia Glukhov, Allegra T Aron, Joris J R Louwen, Hyun Woo Kim, Raphael Reher, Marli Fatima Fiore, Justin Johan Jozias van der Hooft, Lena Gerwick, William H Gerwick, Nuno Bandeira, Pieter C Dorrestein
NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters. PNAS nexus 1 (5) (2022)
Tiago F Leão, Mingxun Wang, Ricardo R da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender Portal Gomes, Asker Daniel Brejnrod, Evgenia Glukhov, Allegra T Aron, Joris J R Louwen, Hyun Woo Kim, Raphael Reher, Marli Fatima Fiore, Justin Johan Jozias van der Hooft, Lena Gerwick, William H Gerwick, Nuno Bandeira, Pieter C Dorrestein
NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters. PNAS nexus 1 (5) (2022)
Wout Bittremieux, Robin Schmid, Florian Huber, Justin Johan Jozias van der Hooft, Mingxun Wang, Pieter C Dorrestein
Comparison of Cosine, Modified Cosine, and Neutral Loss Based Spectrum Alignment For Discovery of Structurally Related Molecules. Journal of the American Society for Mass Spectrometry 33 (9) (2022)
Robin Schmid, Daniel Petras, Louis-Félix Nothias, Mingxun Wang, Allegra T Aron, Annika Jagels, Hiroshi Tsugawa, Johannes Rainer, Mar Garcia-Aloy, Kai Dührkop, Ansgar Korf, Tomáš Pluskal, Zdeněk Kameník, Alan K Jarmusch, Andrés Mauricio Caraballo-Rodríguez, Kelly C Weldon, Melissa Nothias-Esposito, Alexander A Aksenov, Anelize Bauermeister, Andrea G Albarracín Orio, Carlismari Oliveira Grundmann, Fernando Vargas, Irina Koester, Julia M Gauglitz, Emily C Gentry, Yannick Hövelmann, Svetlana A Kalinina, Matthew A Pendergraft, Morgan Panitchpakdi, Richard Tehan, Audrey Le Gouëllec, Gajender Aleti, Helena Mannochio Russo, Birgit Arndt, Florian Hübner, Heiko Hayen, Hui Zhi, Manuela Raffatellu, Kimberly A Prather, Lihini I Aluwihare, Sebastian Böcker, Kerry L McPhail, Hans-Ulrich Humpf, Uwe Karst, Pieter C Dorrestein
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment. Nature communications 12 (1) (2021)
Tiago F Leao, Chase M Clark, Anelize Bauermeister, Emmanuel O Elijah, Emily C Gentry, Makhai Husband, Michelli F Oliveira, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein
Quick-start infrastructure for untargeted metabolomics analysis in GNPS. Nature metabolism 3 (7) (2021)
Tiago Leão, Mingxun Wang, Nathan Moss, Ricardo R da Silva, Jon G Sanders, Sergey Nurk, Alexey Gurevich, Gregory Humphrey, Raphael Reher, Qiyun Zhu, Pedro Belda-Ferre, Evgenia Glukhov, Syrena Whitner, Kelsey L Alexander, Robert Rex, Pavel Pevzner, Pieter C Dorrestein, Rob Knight, Nuno Bandeira, William H Gerwick, Lena Gerwick
A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria. Marine drugs 19 (1) (2021)
Daniel Petras, Andrés Mauricio Caraballo-Rodríguez, Alan K Jarmusch, Carlos Molina-Santiago, Julia M Gauglitz, Emily C Gentry, Pedro Belda-Ferre, Diego Romero, Shirley M Tsunoda, Pieter C Dorrestein, Mingxun Wang
Chemical Proportionality within Molecular Networks. Analytical chemistry 93 (38) (2021)
Hyun Woo Kim, Mingxun Wang, Christopher A Leber, Louis-Félix Nothias, Raphael Reher, Kyo-Bin Kang, Justin Johan Jozias van der Hooft, Pieter C Dorrestein, William H Gerwick, Garrison W Cottrell
NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products. Journal of natural products 84 (11) (2021)
Daniel Petras, Vanessa V Phelan, Deepa Acharya, Andrew Ellis Allen, Allegra T Aron, Nuno Bandeira, Benjamin P Bowen, Deirdre Belle-Oudry, Simon Boecker, Dale A Cummings, Jessica M Deutsch, Eoin Fahy, Neha Garg, Rachel Gregor, Jo Handelsman, Mirtha Navarro-Hoyos, Alan K Jarmusch, Scott Alexander Jarmusch, Katherine Louie, Katherine N Maloney, Michael Thomas Marty, Michael M Meijler, Itzhak Mizrahi, Rachel L Neve, Trent R Northen, Carlos Molina-Santiago, Morgan Panitchpakdi, Benjamin S Pullman, Aaron W Puri, Robin Schmid, Shankar Subramaniam, Monica Thukral, Felipe Vasquez-Castro, Pieter C Dorrestein, Mingxun Wang
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Nature methods (2021)
Allegra T Aron, Emily C Gentry, Kerry L McPhail, Louis-Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani, Daniel Petras, Julia M Gauglitz, Nicole Sikora, Fernando Vargas, Justin Johan Jozias van der Hooft, Madeleine Ernst, Kyo-Bin Kang, Christine M Aceves, Andrés Mauricio Caraballo-Rodriguez, Irina Koester, Kelly C Weldon, Samuel Bertrand, Catherine Roullier, Kunyang Sun, Richard M Tehan, Cristopher A Boya P, Martin H Christian, Marcelino Gutiérrez, Aldo Moreno Ulloa, Javier Andres Tejeda Mora, Randy Mojica-Flores, Johant Lakey-Beitia, Victor Vásquez-Chaves, Yilue Zhang, Angela I Calderón, Nicole M Tayler, Robert A Keyzers, Fidele Tugizimana, Nombuso Ndlovu, Alexander A Aksenov, Alan K Jarmusch, Robin Schmid, Andrew W Truman, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein
Reproducible molecular networking of untargeted mass spectrometry data using GNPS. Nature protocols 15 (6) (2020)
Alan K Jarmusch, Mingxun Wang, Christine M Aceves, Rohit S Advani, Shaden Aguirre, Alexander A Aksenov, Gajender Aleti, Allegra T Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andres Mauricio Caraballo Rodriguez, Rama Chaar, Roxana Coras, Emmanuel O Elijah, Madeleine Ernst, Julia M Gauglitz, Emily C Gentry, Makhai Husband, Scott A Jarmusch, Kenneth L Jones, Zdeněk Kameník, Audrey Le Gouëllec, Aileen Lu, Laura-Isobel McCall, Kerry L McPhail, Michael J Meehan, Alexey V Melnik, Riya C Menezes, Yessica Alejandra Montoya Giraldo, Ngoc Hung Nguyen, Louis-Felix Nothias, Mélissa Nothias-Esposito, Morgan Panitchpakdi, Daniel Petras, Robert A Quinn, Nicole Sikora, Justin Johan Jozias van der Hooft, Fernando Vargas, Alison Vrbanac, Kelly C Weldon, Rob Knight, Nuno Bandeira, Pieter C Dorrestein
ReDU: a framework to find and reanalyze public mass spectrometry data. Nature methods 17 (9) (2020)
Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andrés Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo-Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouëllec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin Johan Jozias van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein
Feature-based molecular networking in the GNPS analysis environment. Nature methods 17 (9) (2020)
Fernando Vargas, Kelly C Weldon, Nicole Sikora, Mingxun Wang, Zheng Zhang, Emily C Gentry, Morgan W Panitchpakdi, Andrés Mauricio Caraballo-Rodriguez, Pieter C Dorrestein, Alan K Jarmusch
Protocol for community-created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure. Rapid communications in mass spectrometry : RCM 34 (10) (2020)

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Publication Activity (10 Years)

Top Topics

Top Venues

Mingxun Wang