Andrew L Routh (A Routh, Andrew Routh)

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 37

Top Venues

Journal of virology

bioRxiv : the preprint server for biology

Nucleic acids research

GigaScience

University of Texas Medical Branch at Galveston

University of Cambridge (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Texas Medical Branch at Galveston Nov 01 2015

United States

Assistant Professor :: Biochemistry and Molecular Biology

Scripps Research Institute

United States

Post-Doctoral Researcher :: DISCoBio

Education History

University of Cambridge

United Kingdom

PHD :: MRC Laboratory of Molecular Biology

Publications

Yiyang Zhou, Andrew L Routh
Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability. Journal of virology 98 (3) (2024)
Yiyang Zhou, Andrew L Routh
Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability. Journal of virology (2024)
Yiyang Zhou, Andrew L Routh
Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability. Journal of virology 98 (3) (2024)
Yiyang Zhou, Andrew L Routh
Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability. Journal of virology 98 (3) (2024)
Yiyang Zhou, Andrew L Routh
Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability. Journal of virology 98 (3) (2024)
Stephanea Sotcheff, Yiyang Zhou, Jason Yeung, Yan Sun, John E Johnson, Bruce E Torbett, Andrew L Routh
ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids. GigaScience 12 (2023)
Craig Schindewolf, Kumari Lokugamage, Michelle N Vu, Bryan A Johnson, Dionna Scharton, Jessica A Plante, Birte Kalveram, Patricia A Crocquet-Valdes, Stephanea Sotcheff, Elizabeth Jaworski, Rojelio E Alvarado, Kari Debbink, Matthew D Daugherty, Scott C Weaver, Andrew L Routh, David H Walker, Kenneth S Plante, Vineet D Menachery
SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. Journal of virology 97 (2) (2023)
Craig Schindewolf, Kumari Lokugamage, Michelle N Vu, Bryan A Johnson, Dionna Scharton, Jessica A Plante, Birte Kalveram, Patricia A Crocquet-Valdes, Stephanea Sotcheff, Elizabeth Jaworski, Rojelio E Alvarado, Kari Debbink, Matthew D Daugherty, Scott C Weaver, Andrew L Routh, David H Walker, Kenneth S Plante, Vineet D Menachery
SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. Journal of virology 97 (2) (2023)
Michelle N Vu, Dorothea R Morris, R Elias Alvarado, Kumari G Lokugamage, Yiyang Zhou, Leah K Estes, Alyssa M McLeland, Craig Schindewolf, Jessica A Plante, Yani P Ahearn, Angelica L Morgan, William M Meyers, Jordan T Murray, Scott C Weaver, David H Walker, William K Russell, Andrew L Routh, Kenneth S Plante, Vineet Menachery
Loss-of-function mutation in Omicron variants reduces spike protein expression and attenuates SARS-CoV-2 infection. bioRxiv : the preprint server for biology (2023)
Craig Schindewolf, Kumari Lokugamage, Michelle N Vu, Bryan A Johnson, Dionna Scharton, Jessica A Plante, Birte Kalveram, Patricia A Crocquet-Valdes, Stephanea Sotcheff, Elizabeth Jaworski, Rojelio E Alvarado, Kari Debbink, Matthew D Daugherty, Scott C Weaver, Andrew L Routh, David H Walker, Kenneth S Plante, Vineet D Menachery
SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. Journal of virology (2023)
Craig Schindewolf, Kumari Lokugamage, Michelle N Vu, Bryan A Johnson, Dionna Scharton, Jessica A Plante, Birte Kalveram, Patricia A Crocquet-Valdes, Stephanea Sotcheff, Elizabeth Jaworski, Rojelio E Alvarado, Kari Debbink, Matthew D Daugherty, Scott C Weaver, Andrew L Routh, David H Walker, Kenneth S Plante, Vineet D Menachery
SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. Journal of virology 97 (2) (2023)
Craig Schindewolf, Kumari Lokugamage, Michelle N Vu, Bryan A Johnson, Dionna Scharton, Jessica A Plante, Birte Kalveram, Patricia A Crocquet-Valdes, Stephanea Sotcheff, Elizabeth Jaworski, Rojelio E Alvarado, Kari Debbink, Matthew D Daugherty, Scott C Weaver, Andrew L Routh, David H Walker, Kenneth S Plante, Vineet D Menachery
SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. Journal of virology 97 (2) (2023)
Stephanea Sotcheff, Yiyang Zhou, Jason Yeung, Yan Sun, John E Johnson, Bruce E Torbett, Andrew L Routh
ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids. GigaScience 12 (2023)
Michelle N Vu, Dorothea R Morris, R Elias Alvarado, Kumari G Lokugamage, Yiyang Zhou, Leah K Estes, Alyssa M McLeland, Craig Schindewolf, Jessica A Plante, Yani P Ahearn, Angelica L Morgan, William M Meyers, Jordan T Murray, Scott C Weaver, David H Walker, William K Russell, Andrew L Routh, Kenneth S Plante, Vineet Menachery
Loss-of-function mutation in Omicron variants reduces spike protein expression and attenuates SARS-CoV-2 infection. bioRxiv : the preprint server for biology (2023)
Craig Schindewolf, Kumari Lokugamage, Michelle N Vu, Bryan A Johnson, Dionna Scharton, Jessica A Plante, Birte Kalveram, Patricia A Crocquet-Valdes, Stephanea Sotcheff, Elizabeth Jaworski, Rojelio E Alvarado, Kari Debbink, Matthew D Daugherty, Scott C Weaver, Andrew L Routh, David H Walker, Kenneth S Plante, Vineet D Menachery
SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. Journal of virology (2023)
Craig Schindewolf, Kumari Lokugamage, Michelle N Vu, Bryan A Johnson, Dionna Scharton, Jessica A Plante, Birte Kalveram, Patricia A Crocquet-Valdes, Stephanea Sotcheff, Elizabeth Jaworski, Rojelio E Alvarado, Kari Debbink, Matthew D Daugherty, Scott C Weaver, Andrew L Routh, David H Walker, Kenneth S Plante, Vineet D Menachery
SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. Journal of virology 97 (2) (2023)
Po-Yu Sung, Yiyang Zhou, C Cheng Kao, Ali A Aburigh, Andrew L Routh, Polly Roy
A multidisciplinary approach to the identification of the protein-RNA connectome in double-stranded RNA virus capsids. Nucleic acids research (2023)
Stuti K Desai, Yiyang Zhou, Rahul Dilawari, Andrew L Routh, Vsevolod Popov, Linda J Kenney
RpoS activates Salmonella Typhi biofilms and drives persistence in a Zebrafish model. bioRxiv : the preprint server for biology (2023)
Craig Schindewolf, Kumari Lokugamage, Michelle N Vu, Bryan A Johnson, Dionna Scharton, Jessica A Plante, Birte Kalveram, Patricia A Crocquet-Valdes, Stephanea Sotcheff, Elizabeth Jaworski, Rojelio E Alvarado, Kari Debbink, Matthew D Daugherty, Scott C Weaver, Andrew L Routh, David H Walker, Kenneth S Plante, Vineet D Menachery
SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. Journal of virology (2023)
Craig Schindewolf, Kumari Lokugamage, Michelle N Vu, Bryan A Johnson, Dionna Scharton, Jessica A Plante, Birte Kalveram, Patricia A Crocquet-Valdes, Stephanea Sotcheff, Elizabeth Jaworski, R Elias Alvarado, Kari Debbink, Matthew D Daugherty, Scott C Weaver, Andrew L Routh, David H Walker, Kenneth S Plante, Vineet D Menachery
SARS-CoV-2 Uses Nonstructural Protein 16 to Evade Restriction by IFIT1 and IFIT3. bioRxiv : the preprint server for biology (2022)
Christian M Gallardo, Anh-Viet T Nguyen, Andrew L Routh, Bruce E Torbett
Selective ablation of 3' RNA ends and processive RTs facilitate direct cDNA sequencing of full-length host cell and viral transcripts. Nucleic acids research 50 (17) (2022)
Stephanea L Sotcheff, John Yun-Chung Chen, Nathan Elrod, Jun Cao, Elizabeth Jaworski, Muge N Kuyumcu-Martinez, Pei-Yong Shi, Andrew L Routh
Zika Virus Infection Alters Gene Expression and Poly-Adenylation Patterns in Placental Cells. Pathogens (Basel, Switzerland) 11 (8) (2022)
Jason Yeung, Andrew L Routh
ViReMaShiny: an interactive application for analysis of viral recombination data. Bioinformatics (Oxford, England) 38 (18) (2022)
Michelle N Vu, Kumari G Lokugamage, Jessica A Plante, Dionna Scharton, Aaron O Bailey, Stephanea Sotcheff, Daniele M Swetnam, Bryan A Johnson, Craig Schindewolf, R Elias Alvarado, Patricia A Crocquet-Valdes, Kari Debbink, Scott C Weaver, David H Walker, William K Russell, Andrew L Routh, Kenneth S Plante, Vineet D Menachery
QTQTN motif upstream of the furin-cleavage site plays a key role in SARS-CoV-2 infection and pathogenesis. Proceedings of the National Academy of Sciences of the United States of America 119 (32) (2022)
Shiyi Wang, Stephanea L Sotcheff, Christian M Gallardo, Elizabeth Jaworski, Bruce E Torbett, Andrew L Routh
Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa. Nucleic acids research 50 (7) (2022)
Jun Cao, Andrew L Routh, Muge N Kuyumcu-Martinez
Nanopore sequencing reveals full-length Tropomyosin 1 isoforms and their regulation by RNA-binding proteins during rat heart development. Journal of cellular and molecular medicine 25 (17) (2021)
Jennifer Gribble, Laura J Stevens, Maria L Agostini, Jordan Anderson-Daniels, James D Chappell, Xiaotao Lu, Andrea J Pruijssers, Andrew L Routh, Mark R Denison
The coronavirus proofreading exoribonuclease mediates extensive viral recombination. PLoS pathogens 17 (1) (2021)
Antonio Muruato, Michelle N Vu, Bryan A Johnson, Meredith E Davis-Gardner, Abigail Vanderheiden, Kumari Lokugamage, Craig Schindewolf, Patricia A Crocquet-Valdes, Rose M Langsjoen, Jessica A Plante, Kenneth S Plante, Scott C Weaver, Kari Debbink, Andrew L Routh, David Walker, Mehul S Suthar, Pei-Yong Shi, Xuping Xie, Vineet D Menachery
Mouse-adapted SARS-CoV-2 protects animals from lethal SARS-CoV challenge. PLoS biology 19 (11) (2021)
Bryan A Johnson, Xuping Xie, Adam L Bailey, Birte Kalveram, Kumari G Lokugamage, Antonio Muruato, Jing Zou, Xianwen Zhang, Terry Juelich, Jennifer K Smith, Lihong Zhang, Nathen Bopp, Craig Schindewolf, Michelle Vu, Abigail Vanderheiden, Emma S Winkler, Daniele M Swetnam, Jessica A Plante, Patricia Aguilar, Kenneth S Plante, Vsevolod Popov, Benhur Lee, Scott C Weaver, Mehul S Suthar, Andrew L Routh, Ping Ren, Zhiqiang Ku, Zhiqiang An, Kari Debbink, Michael S Diamond, Pei-Yong Shi, Alexander N Freiberg, Vineet D Menachery
Loss of furin cleavage site attenuates SARS-CoV-2 pathogenesis. Nature 591 (7849) (2021)
Bryan A Johnson, Yiyang Zhou, Kumari G Lokugamage, Michelle N Vu, Nathen Bopp, Patricia A Crocquet-Valdes, Craig Schindewolf, Yang Liu, Dionna Scharton, Jessica A Plante, Xuping Xie, Patricia Aguilar, Scott C Weaver, Pei-Yong Shi, David H Walker, Andrew L Routh, Kenneth S Plante, Vineet D Menachery
Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis. bioRxiv : the preprint server for biology (2021)
Christian M Gallardo, Shiyi Wang, Daniel J Montiel-Garcia, Susan J Little, Davey M Smith, Andrew L Routh, Bruce E Torbett
MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution. Nucleic acids research 49 (12) (2021)
Elizabeth Jaworski, Rose M Langsjoen, Brooke Mitchell, Barbara Judy, Patrick Newman, Jessica A Plante, Kenneth S Plante, Aaron L Miller, Yiyang Zhou, Daniele Swetnam, Stephanea Sotcheff, Victoria Morris, Nehad Saada, Rafael Rg Machado, Allan McConnell, Steven G Widen, Jill Thompson, Jianli Dong, Ping Ren, Rick B Pyles, Thomas G Ksiazek, Vineet D Menachery, Scott C Weaver, Andrew L Routh
Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants. eLife 10 (2021)
Tiffany F Kautz, Elizabeth Jaworski, Andrew L Routh, Naomi L Forrester
A Low Fidelity Virus Shows Increased Recombination during the Removal of an Alphavirus Reporter Gene. Viruses 12 (6) (2020)
Bryan A Johnson, Xuping Xie, Birte Kalveram, Kumari G Lokugamage, Antonio Muruato, Jing Zou, Xianwen Zhang, Terry Juelich, Jennifer K Smith, Lihong Zhang, Nathen Bopp, Craig Schindewolf, Michelle Vu, Abigail Vanderheiden, Daniele Swetnam, Jessica A Plante, Patricia Aguilar, Kenneth S Plante, Benhur Lee, Scott C Weaver, Mehul S Suthar, Andrew L Routh, Ping Ren, Zhiqiang Ku, Zhiqiang An, Kari Debbink, Pei Yong Shi, Alexander N Freiberg, Vineet D Menachery
Furin Cleavage Site Is Key to SARS-CoV-2 Pathogenesis. bioRxiv : the preprint server for biology (2020)
Rose M Langsjoen, A E Muruato, S R Kunkel, E Jaworski, Andrew L Routh
Differential Alphavirus Defective RNA Diversity between Intracellular and Extracellular Compartments Is Driven by Subgenomic Recombination Events. mBio 11 (4) (2020)
Andrew L Routh
DPAC: A Tool for Differential Poly(A)-Cluster Usage from Poly(A)-Targeted RNAseq Data. G3 (Bethesda, Md.) 9 (6) (2019)
Michiel van de Waterbeemd, Kyle L Fort, Dmitriy Boll, Maria Reinhardt-Szyba, Andrew L Routh, Alexander Makarov, Albert J R Heck
High-fidelity mass analysis unveils heterogeneity in intact ribosomal particles. Nature methods 14 (3) (2017)

Andrew L Routh.css-eqlu8i{font-size:small;padding-left:4px;} (A Routh, Andrew Routh)

Publication Activity (10 Years)

Top Topics

Top Venues

Andrew L Routh (A Routh, Andrew Routh)