Xuping Xie

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 83

Top Topics

Neural Stem Cells

Monoclonal Antibody

Top Venues

Nature communications

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Michael W Grunst, Zhuan Qin, Esteban Dodero-Rojas, Shilei Ding, Jérémie Prévost, Yaozong Chen, Yanping Hu, Marzena E Pazgier, Shenping Wu, Xuping Xie, Andrés Finzi, José Nelson Onuchic, Paul Charles Whitford, Walther Mothes, Wenwei Li
Structure and inhibition of SARS-CoV-2 spike refolding in membranes. Science (New York, N.Y.) 385 (6710) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Lijing Zhang, Xuping Xie, Hannan Luo, Runtong Qian, Yang Yang, Hongtao Yu, Jing Huang, Pei-Yong Shi, Qi Hu
Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04. Cell discovery 10 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Lijing Zhang, Xuping Xie, Hannan Luo, Runtong Qian, Yang Yang, Hongtao Yu, Jing Huang, Pei-Yong Shi, Qi Hu
Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04. Cell discovery 10 (1) (2024)
Juleen Gayed, Oyeniyi Diya, Francine S Lowry, Xia Xu, Vishva Bangad, Federico Mensa, Jing Zou, Xuping Xie, Yanping Hu, Claire Lu, Mark Cutler, Todd Belanger, David Cooper, Kenneth Koury, Annaliesa S Anderson, Özlem Türeci, Uǧur Şahin, Kena A Swanson, Kayvon Modjarrad, Alejandra Gurtman, Nicholas Kitchin, null null
Safety and Immunogenicity of the Monovalent Omicron XBB.1.5-Adapted BNT162b2 COVID-19 Vaccine in Individuals ≥12 Years Old: A Phase 2/3 Trial. Vaccines 12 (2) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Lijing Zhang, Xuping Xie, Hannan Luo, Runtong Qian, Yang Yang, Hongtao Yu, Jing Huang, Pei-Yong Shi, Qi Hu
Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04. Cell discovery 10 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Lijing Zhang, Xuping Xie, Hannan Luo, Runtong Qian, Yang Yang, Hongtao Yu, Jing Huang, Pei-Yong Shi, Qi Hu
Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04. Cell discovery 10 (1) (2024)
Juleen Gayed, Oyeniyi Diya, Francine S Lowry, Xia Xu, Vishva Bangad, Federico Mensa, Jing Zou, Xuping Xie, Yanping Hu, Claire Lu, Mark Cutler, Todd Belanger, David Cooper, Kenneth Koury, Annaliesa S Anderson, Özlem Türeci, Uǧur Şahin, Kena A Swanson, Kayvon Modjarrad, Alejandra Gurtman, Nicholas Kitchin, null null
Safety and Immunogenicity of the Monovalent Omicron XBB.1.5-Adapted BNT162b2 COVID-19 Vaccine in Individuals ≥12 Years Old: A Phase 2/3 Trial. Vaccines 12 (2) (2024)
Adil Muneer, Ling Xie, Xuping Xie, Feng Zhang, John A Wrobel, Yan Xiong, Xufen Yu, Charles Wang, Ciprian Gheorghe, Ping Wu, Juan Song, Guo-Li Ming, Jian Jin, Hongjun Song, Pei-Yong Shi, Xian Chen
Targeting G9a translational mechanism of SARS-CoV-2 pathogenesis for multifaceted therapeutics of COVID-19 and its sequalae. bioRxiv : the preprint server for biology (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Michael W Grunst, Zhuan Qin, Esteban Dodero-Rojas, Shilei Ding, Jérémie Prévost, Yaozong Chen, Yanping Hu, Marzena E Pazgier, Shenping Wu, Xuping Xie, Andrés Finzi, José Nelson Onuchic, Paul Charles Whitford, Walther Mothes, Wenwei Li
Structure and inhibition of SARS-CoV-2 spike refolding in membranes. Science (New York, N.Y.) 385 (6710) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Michael W Grunst, Zhuan Qin, Esteban Dodero-Rojas, Shilei Ding, Jérémie Prévost, Yaozong Chen, Yanping Hu, Marzena E Pazgier, Shenping Wu, Xuping Xie, Andrés Finzi, José Nelson Onuchic, Paul Charles Whitford, Walther Mothes, Wenwei Li
Structure and inhibition of SARS-CoV-2 spike refolding in membranes. Science (New York, N.Y.) 385 (6710) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Panke Qu, John P Evans, Chaitanya Kurhade, Cong Zeng, Yi-Min Zheng, Kai Xu, Pei-Yong Shi, Xuping Xie, Shan-Lu Liu
Determinants and Mechanisms of the Low Fusogenicity and High Dependence on Endosomal Entry of Omicron Subvariants. mBio 14 (1) (2023)
Panke Qu, John P Evans, Chaitanya Kurhade, Cong Zeng, Yi-Min Zheng, Kai Xu, Pei-Yong Shi, Xuping Xie, Shan-Lu Liu
Determinants and Mechanisms of the Low Fusogenicity and High Dependence on Endosomal Entry of Omicron Subvariants. mBio 14 (1) (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Panke Qu, John P Evans, Chaitanya Kurhade, Cong Zeng, Yi-Min Zheng, Kai Xu, Pei-Yong Shi, Xuping Xie, Shan-Lu Liu
Determinants and Mechanisms of the Low Fusogenicity and High Dependence on Endosomal Entry of Omicron Subvariants. mBio 14 (1) (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Jonathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Author Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Jonathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Author Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Panke Qu, John P Evans, Chaitanya Kurhade, Cong Zeng, Yi-Min Zheng, Kai Xu, Pei-Yong Shi, Xuping Xie, Shan-Lu Liu
Determinants and Mechanisms of the Low Fusogenicity and High Dependence on Endosomal Entry of Omicron Subvariants. mBio (2023)
Jule Goike, Ching-Lin Hsieh, Andrew P Horton, Elizabeth C Gardner, Ling Zhou, Foteini Bartzoka, Nianshuang Wang, Kamyab Javanmardi, Andrew Herbert, Shawn Abbassi, Xuping Xie, Hongjie Xia, Pei-Yong Shi, Rebecca L Renberg, Thomas H Segall-Shapiro, Cynthia I Terrace, Wesley Wu, Raghav Shroff, Michelle Byrom, Andrew D Ellington, Edward M Marcotte, James M Musser, Suresh V Kuchipudi, Vivek Kapur, George Georgiou, Scott C Weaver, John M Dye, Daniel R Boutz, Jason S Mclellan, Jimmy D Gollihar
SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode. Communications biology 6 (1) (2023)
Panke Qu, John P Evans, Chaitanya Kurhade, Cong Zeng, Yi-Min Zheng, Kai Xu, Pei-Yong Shi, Xuping Xie, Shan-Lu Liu
Determinants and Mechanisms of the Low Fusogenicity and High Dependence on Endosomal Entry of Omicron Subvariants. mBio (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Awadalkareem Adam, Birte Kalveram, John Yun-Chung Chen, Jason Yeung, Leslie Rodriguez, Ankita Singh, Pei-Yong Shi, Xuping Xie, Tian Wang
A single-dose of intranasal vaccination with a live-attenuated SARS-CoV-2 vaccine candidate promotes protective mucosal and systemic immunity. bioRxiv : the preprint server for biology (2023)
Leonid Yurkovetskiy, Shawn Egri, Chaitanya Kurhade, Marco A Diaz-Salinas, Javier A Jaimes, Thomas Nyalile, Xuping Xie, Manish C Choudhary, Ann Dauphin, Jonathan Z Li, James B Munro, Pei-Yong Shi, Kuang Shen, Jeremy Luban
S:D614G and S:H655Y are gateway mutations that act epistatically to promote SARS-CoV-2 variant fitness. bioRxiv : the preprint server for biology (2023)
Awadalkareem Adam, Birte Kalveram, John Yun-Chung Chen, Jason Yeung, Leslie Rodriguez, Ankita Singh, Pei-Yong Shi, Xuping Xie, Tian Wang
A single-dose of intranasal vaccination with a live-attenuated SARS-CoV-2 vaccine candidate promotes protective mucosal and systemic immunity. NPJ vaccines 8 (1) (2023)
Jing Zou, Xuping Xie, Mingru Liu, Pei-Yong Shi, Ping Ren
Correction for Zhou et al., "Neutralization Titers in Vaccinated Patients with SARS-CoV-2 Delta Breakthrough Infections". mBio (2022)
Jared Pitts, Jiani Li, Jason K Perry, Venice Du Pont, Nicholas Riola, Lauren Rodriguez, Xianghan Lu, Chaitanya Kurhade, Xuping Xie, Gregory Camus, Savrina Manhas, Ross Martin, Pei-Yong Shi, Tomas Cihlar, Danielle P Porter, Hongmei Mo, Evguenia Maiorova, John P Bilello
Remdesivir and GS-441524 Retain Antiviral Activity against Delta, Omicron, and Other Emergent SARS-CoV-2 Variants. Antimicrobial agents and chemotherapy 66 (6) (2022)
Zhiqiang Ku, Xuping Xie, Jian Qing Lin, Peng Gao, Bin Wu, Abbas El Sahili, Hang Su, Yang Liu, Xiaohua Ye, Eddie Yongjun Tan, Xin Li, Xuejun Fan, Boon Chong Goh, Wei Xiong, Hannah Boyd, Antonio E Muruato, Hui Deng, Hongjie Xia, Jing Zou, Birte K Kalveram, Vineet D Menachery, Ningyan Zhang, Julien Lescar, Pei-Yong Shi, Zhiqiang An
Engineering SARS-CoV-2 specific cocktail antibodies into a bispecific format improves neutralizing potency and breadth. Nature communications 13 (1) (2022)
Christopher M Richards, Sabrina Jabs, Wenjie Qiao, Lauren D Varanese, Michaela Schweizer, Peter R Mosen, Nicholas M Riley, Malte Klüssendorf, James R Zengel, Ryan A Flynn, Arjun Rustagi, John C Widen, Christine E Peters, Yaw Shin Ooi, Xuping Xie, Pei-Yong Shi, Vibhu Prasad, Andreas S Puschnik, Matthew M Bogyo, Carolyn R Bertozzi, Catherine A Blish, Dominic Winter, Claude M Nagamine, Thomas Braulke, Jan E Carette
The human disease gene LYSET is essential for lysosomal enzyme transport and viral infection. Science (New York, N.Y.) 378 (6615) (2022)
Jing Zou, Xuping Xie, Mingru Liu, Pei-Yong Shi, Ping Ren
Neutralization Titers in Vaccinated Patients with SARS-CoV-2 Delta Breakthrough Infections. mBio 13 (4) (2022)
Mariana F Tioni, Robert Jordan, Angie Silva Pena, Aditya Garg, Danlu Wu, Shannon I Phan, Christopher M Weiss, Xing Cheng, Jack Greenhouse, Tatyana Orekov, Daniel Valentin, Swagata Kar, Laurent Pessaint, Hanne A Elyard, Christopher C Stobart, Melissa H Bloodworth, R Stokes Peebles, Yang Liu, Xuping Xie, Pei-Yong Shi, Martin L Moore, Roderick S Tang
Mucosal administration of a live attenuated recombinant COVID-19 vaccine protects nonhuman primates from SARS-CoV-2. NPJ vaccines 7 (1) (2022)
Jing Zou, Hongjie Xia, Xuping Xie, Chaitanya Kurhade, Rafael R G Machado, Scott C Weaver, Ping Ren, Pei-Yong Shi
Neutralization against Omicron SARS-CoV-2 from previous non-Omicron infection. Nature communications 13 (1) (2022)
Li Wang, Markus H Kainulainen, Nannan Jiang, Han Di, Gaston Bonenfant, Lisa Mills, Michael Currier, Punya Shrivastava-Ranjan, Brenda M Calderon, Mili Sheth, Brian R Mann, Jaber Hossain, Xudong Lin, Sandra Lester, Elizabeth A Pusch, Joyce Jones, Dan Cui, Payel Chatterjee, M Harley Jenks, Esther K Morantz, Gloria P Larson, Masato Hatta, Jennifer L Harcourt, Azaibi Tamin, Yan Li, Ying Tao, Kun Zhao, Kristine A Lacek, Ashley Burroughs, Wei Wang, Malania Wilson, Terianne Wong, So Hee Park, Suxiang Tong, John R Barnes, Mark W Tenforde, Wesley H Self, Nathan I Shapiro, Matthew C Exline, D Clark Files, Kevin W Gibbs, David N Hager, Manish Patel, Alison L Halpin, Laura K McMullan, Justin S Lee, Hongjie Xia, Xuping Xie, Pei-Yong Shi, C Todd Davis, Christina F Spiropoulou, Natalie J Thornburg, M Steven Oberste, Vivien G Dugan, null null, David E Wentworth, Bin Zhou
Differential neutralization and inhibition of SARS-CoV-2 variants by antibodies elicited by COVID-19 mRNA vaccines. Nature communications 13 (1) (2022)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature 610 (7931) (2022)
Yan Fang, Pengcheng Sun, Xuping Xie, Mingjian Du, Fenghe Du, Jianfeng Ye, Birte K Kalveram, Jessica A Plante, Kenneth S Plante, Bo Li, Xiao-Chen Bai, Pei-Yong Shi, Zhijian J Chen
An antibody that neutralizes SARS-CoV-1 and SARS-CoV-2 by binding to a conserved spike epitope outside the receptor binding motif. Science immunology 7 (76) (2022)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Shaoheng Liang, Caishang Zheng, Ken Chen, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify key anti-viral host factors and pathways controlling SARS-CoV-2 infection. Research square (2022)
Chaitanya Kurhade, Jing Zou, Hongjie Xia, Hui Cai, Qi Yang, Mark Cutler, David Cooper, Alexander Muik, Kathrin U Jansen, Xuping Xie, Kena A Swanson, Pei-Yong Shi
Neutralization of Omicron BA.1, BA.2, and BA.3 SARS-CoV-2 by 3 doses of BNT162b2 vaccine. Nature communications 13 (1) (2022)
Panke Qu, John P Evans, Chaitanya Kurhade, Cong Zeng, Yi-Min Zheng, Kai Xu, Pei-Yong Shi, Xuping Xie, Shan-Lu Liu
Determinants and Mechanisms of the Low Fusogenicity and Endosomal Entry of Omicron Subvariants. bioRxiv : the preprint server for biology (2022)
Marciela M DeGrace, Elodie Ghedin, Matthew B Friemann, Florian Krammer, Alba Grifoni, Arghavan Alisoltani, Galit Alter, Rama Rao Amara, Ralph S Baric, Dan H Barouch, Jesse D Bloom, Louis-Marie Bloyet, Gaston Bonenfant, Adrianus C M Boon, Eli A Boritz, Debbie L Bratt, Traci L Bricker, Liliana Brown, William J Buchser, Juan Manuel Carreño, Liel Cohen-Lavi, Tamarand L Darling, Meredith E Davis-Gardner, Bethany L Dearlove, Han Di, Meike Dittmann, Nicole A Doria-Rose, Daniel C Douek, Christian Drosten, Venkata-Viswanadh Edara, Ali H Ellebedy, Thomas P Fabrizio, Guido Ferrari, Will M Fischer, William C Florence, Ron A M Fouchier, John Franks, Adolfo García-Sastre, Adam Godzik, Ana Silvia Gonzalez-Reiche, Aubree Gordon, Bart L Haagmans, Peter J Halfmann, David D Ho, Michael R Holbrook, Yaoxing Huang, Sarah L James, Lukasz Jaroszewski, Trushar Jeevan, Robert M Johnson, Terry C Jones, Astha Joshi, Yoshihiro Kawaoka, Lisa Kercher, Marion P G Koopmans, Bette T Korber, Eilay Koren, Richard A Koup, Eric B LeGresley, Jacob E Lemieux, Mariel J Liebeskind, Zhuoming Liu, Brandi Livingston, James P Logue, Yang Luo, Adrian B McDermott, Margaret J McElrath, Victoria A Meliopoulos, Vineet D Menachery, David C Montefiori, Barbara Mühlemann, Vincent J Munster, Jenny E Munt, Manoj S Nair, Antonia Netzl, Anna M Niewiadomska, Sijy O'Dell, Andrew S Pekosz, Stanley Perlman, Marjorie C Pontelli, Barry Rockx, Morgane Rolland, Paul W Rothlauf, Sinai Sacharen, Richard H Scheuermann, Stephen D Schmidt, Michael Schotsaert, Stacey Schultz-Cherry, Robert A Seder, Mayya Sedova, Alessandro Sette, Reed S Shabman, Xiaoying Shen, Pei-Yong Shi, Maulik Shukla, Viviana Simon, Spencer Stumpf, Nancy J Sullivan, Larissa B Thackray, James Theiler, Paul Glyndwr Thomas, Sanja Trifkovic, Sina Türeli, Samuel A Turner, Maria A Vakaki, Harm van Bakel, Laura A VanBlargan, Leah R Vincent, Zachary S Wallace, Li Wang, Maple Wang, Pengfei Wang, Wei Wang, Scott C Weaver, Richard John Webby, Carol D Weiss, David E Wentworth, Stuart M Weston, Sean P J Whelan, Bradley M Whitener, Samuel H Wilks, Xuping Xie, Baoling Ying, Hyejin Yoon, Bin Zhou, Tomer Hertz, Derek J Smith, Michael S. Diamond, Diane J Post, Mehul S Suthar
Defining the risk of SARS-CoV-2 variants on immune protection. Nature 605 (7911) (2022)
Yang Liu, Xianwen Zhang, Jianying Liu, Hongjie Xia, Jing Zou, Antonio E Muruato, Sivakumar Periasamy, Chaitanya Kurhade, Jessica A Plante, Nathen E Bopp, Birte Kalveram, Alexander Bukreyev, Ping Ren, Tian Wang, Vineet D Menachery, Kenneth S Plante, Xuping Xie, Scott C Weaver, Pei-Yong Shi
A live-attenuated SARS-CoV-2 vaccine candidate with accessory protein deletions. Nature communications 13 (1) (2022)
Jing Zou, Chaitanya Kurhade, Hongjie Xia, Mingru Liu, Xuping Xie, Ping Ren, Pei-Yong Shi
Cross-neutralization of Omicron BA.1 against BA.2 and BA.3 SARS-CoV-2. Nature communications 13 (1) (2022)
Chaitanya Kurhade, Jing Zou, Hongjie Xia, Mingru Liu, Hope C Chang, Ping Ren, Xuping Xie, Pei-Yong Shi
Low neutralization of SARS-CoV-2 Omicron BA.2.75.2, BQ.1.1, and XBB.1 by parental mRNA vaccine or a BA.5-bivalent booster. Nature medicine (2022)
Yang Liu, Jianying Liu, Jing Zou, Birte Kalveram, Rafael R G Machado, Ping Ren, Sina Türeli, Derek J Smith, Scott C Weaver, Xuping Xie, Pei-Yong Shi
Cross-neutralization and cross-protection among SARS-CoV-2 viruses bearing different variant spikes. Signal transduction and targeted therapy 7 (1) (2022)
Yang Liu, Xianwen Zhang, Jianying Liu, Hongjie Xia, Jing Zou, Antonio E Muruato, Sivakumar Periasamy, Chaitanya Kurhade, Jessica A Plante, Nathen E Bopp, Birte Kalveram, Alexander Bukreyev, Ping Ren, Tian Wang, Vineet D Menachery, Kenneth S Plante, Xuping Xie, Scott C Weaver, Pei-Yong Shi
Publisher Correction: A live-attenuated SARS-CoV-2 vaccine candidate with accessory protein deletions. Nature communications 13 (1) (2022)
Jianying Liu, Yang Liu, Hongjie Xia, Jing Zou, Scott C Weaver, Kena A Swanson, Hui Cai, Mark Cutler, David Cooper, Alexander Muik, Kathrin U Jansen, Ugur Sahin, Xuping Xie, Philip R Dormitzer, Pei-Yong Shi
BNT162b2-elicited neutralization of Delta plus, Lambda, Mu, B.1.1.519, and Theta SARS-CoV-2 variants. NPJ vaccines 7 (1) (2022)
Rita E Chen, Emma S Winkler, James Brett Case, Ishmael D Aziati, Traci L Bricker, Astha Joshi, Tamarand L Darling, Baoling Ying, John M Errico, Swathi Shrihari, Laura A VanBlargan, Xuping Xie, Pavlo Gilchuk, Seth J Zost, Lindsay Droit, Zhuoming Liu, Spencer Stumpf, David Wang, Scott A Handley, W Blaine Stine, Pei-Yong Shi, Meredith E Davis-Gardner, Mehul S Suthar, Miguel Garcia Knight, Raul Andino, Charles Y Chiu, Ali H Ellebedy, Daved H Fremont, Sean P J Whelan, James E Crowe, Lisa Purcell, Davide Corti, Adrianus C M Boon, Michael S. Diamond
In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains. Nature 596 (7870) (2021)
Jinhui Dong, Seth J Zost, Allison J Greaney, Tyler N Starr, Adam S Dingens, Elaine C Chen, Rita E Chen, James Brett Case, Rachel E Sutton, Pavlo Gilchuk, Jessica Rodriguez, Erica Armstrong, Christopher Gainza, Rachel S Nargi, Elad M Binshtein, Xuping Xie, Xianwen Zhang, Pei-Yong Shi, James P Logue, Stuart Weston, Marisa E McGrath, Matthew B Friemann, Tyler Brady, Kevin M Tuffy, Helen Bright, Yueh-Ming Loo, Patrick M McTamney, Mark T Esser, Robert H Carnahan, Michael S. Diamond, Jesse D Bloom, James E Crowe
Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail. Nature microbiology 6 (10) (2021)
Yang Liu, Jianying Liu, Kenneth S Plante, Jessica A Plante, Xuping Xie, Xianwen Zhang, Zhiqiang Ku, Zhiqiang An, Dionna Scharton, Craig Schindewolf, Steven G Widen, Vineet D Menachery, Pei-Yong Shi, Scott C Weaver
The N501Y spike substitution enhances SARS-CoV-2 infection and transmission. Nature (2021)
Jianying Liu, Yang Liu, Hongjie Xia, Jing Zou, Scott C Weaver, Kena A Swanson, Hui Cai, Mark Cutler, David Cooper, Alexander Muik, Kathrin U Jansen, Ugur Sahin, Xuping Xie, Philip R Dormitzer, Pei-Yong Shi
BNT162b2-elicited neutralization of B.1.617 and other SARS-CoV-2 variants. Nature 596 (7871) (2021)
Jackson S Turner, Jane A O'Halloran, Elizaveta Kalaidina, Wooseob Kim, Aaron J Schmitz, Julian Q Zhou, Tingting Lei, Mahima Thapa, Rita E Chen, James Brett Case, Fatima Amanat, Adriana M Rauseo, Alem Haile, Xuping Xie, Michael K Klebert, Teresa Suessen, William D Middleton, Pei-Yong Shi, Florian Krammer, Sharlene A Teefey, Michael S. Diamond, Rachel M Presti, Ali H Ellebedy
SARS-CoV-2 mRNA vaccines induce persistent human germinal centre responses. Nature 596 (7870) (2021)
Xuping Xie, Kumari G Lokugamage, Xianwen Zhang, Michelle N Vu, Antonio E Muruato, Vineet D Menachery, Pei-Yong Shi
Engineering SARS-CoV-2 using a reverse genetic system. Nature protocols 16 (3) (2021)
Rita E Chen, Xianwen Zhang, James Brett Case, Emma S Winkler, Yang Liu, Laura A VanBlargan, Jianying Liu, John M Errico, Xuping Xie, Naveen Chandra Suryadevara, Pavlo Gilchuk, Seth J Zost, Stephen Tahan, Lindsay Droit, Jackson S Turner, Wooseob Kim, Aaron J Schmitz, Mahima Thapa, David Wang, Adrianus C M Boon, Rachel M Presti, Jane A O'Halloran, Alfred Hyoungju Kim, Parakkal Deepak, Dora Pinto, Daved H Fremont, James E Crowe, Davide Corti, Herbert W Virgin, Ali H Ellebedy, Pei-Yong Shi, Michael S. Diamond
Resistance of SARS-CoV-2 variants to neutralization by monoclonal and serum-derived polyclonal antibodies. Nature medicine 27 (4) (2021)
Zhiqiang Ku, Xuping Xie, Edgar Davidson, Xiaohua Ye, Hang Su, Vineet D Menachery, Yize Li, Zihao Yuan, Xianwen Zhang, Antonio E Muruato, Ariadna Grinyo I Escuer, Breanna Tyrell, Kyle Doolan, Benjamin J Doranz, Daniel Wrapp, Paul F Bates, Jason S Mclellan, Susan R Weiss, Ningyan Zhang, Pei-Yong Shi, Zhiqiang An
Author Correction: Molecular determinants and mechanism for antibody cocktail preventing SARS-CoV-2 escape. Nature communications 12 (1) (2021)
Bryan A Johnson, Xuping Xie, Adam L Bailey, Birte Kalveram, Kumari G Lokugamage, Antonio Muruato, Jing Zou, Xianwen Zhang, Terry Juelich, Jennifer K Smith, Lihong Zhang, Nathen Bopp, Craig Schindewolf, Michelle Vu, Abigail Vanderheiden, Emma S Winkler, Daniele M Swetnam, Jessica A Plante, Patricia Aguilar, Kenneth S Plante, Vsevolod Popov, Benhur Lee, Scott C Weaver, Mehul S Suthar, Andrew L Routh, Ping Ren, Zhiqiang Ku, Zhiqiang An, Kari Debbink, Michael S Diamond, Pei-Yong Shi, Alexander N Freiberg, Vineet D Menachery
Loss of furin cleavage site attenuates SARS-CoV-2 pathogenesis. Nature 591 (7849) (2021)
Michael S. Diamond, Rita Chen, Emma Winkler, James Brett Case, Ishmael Aziati, Traci Bricker, Astha Joshi, Tamarand Darling, Baoling Ying, John Errico, Swathi Shrihari, Laura VanBlargan, Xuping Xie, Pavlo Gilchuk, Seth J Zost, Lindsay Droit, Zhuoming Liu, Spencer Stumpf, David Wang, Scott Handley, W Stine, Pei-Yong Shi, Miguel Garcia-Knight, Raul Andino, Charles Y Chiu, Ali H Ellebedy, Daved H Fremont, Sean P J Whelan, James E Crowe, Lisa Purcell, Davide Corti, Adrianus C M Boon
In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains. Research square (2021)
Pei Xu, Junling Gao, Chao Shan, Tiffany J Dunn, Xuping Xie, Hongjie Xia, Jing Zou, Beatriz H Thames, Amulya Sajja, Yongjia Yu, Alexander N Freiberg, Nikos Vasilakis, Pei-Yong Shi, Scott C Weaver, Ping Wu
Inhibition of innate immune response ameliorates Zika virus-induced neurogenesis deficit in human neural stem cells. PLoS neglected tropical diseases 15 (3) (2021)
Xuping Xie, Antonio E Muruato, Xianwen Zhang, Kumari G Lokugamage, Camila R Fontes-Garfias, Jing Zou, Jianying Liu, Ping Ren, Mini Balakrishnan, Tomas Cihlar, Chien-Te Kent Tseng, Shinji Makino, Vineet D Menachery, John P Bilello, Pei-Yong Shi
Author Correction: A nanoluciferase SARS-CoV-2 for rapid neutralization testing and screening of anti-infective drugs for COVID-19. Nature communications 12 (1) (2021)
Zhiqiang Ku, Xuping Xie, Paul R Hinton, Xinli Liu, Xiaohua Ye, Antonio E Muruato, Dean C Ng, Sujit Biswas, Jing Zou, Yang Liu, Deepal Pandya, Vineet D Menachery, Sachi Rahman, Yu-An Cao, Hui Deng, Wei Xiong, Kevin B Carlin, Junquan Liu, Hang Su, Elizabeth J Haanes, Bruce A Keyt, Ningyan Zhang, Stephen F Carroll, Pei-Yong Shi, Zhiqiang An
Nasal delivery of an IgM offers broad protection from SARS-CoV-2 variants. Nature 595 (7869) (2021)
Zhiqiang Ku, Xuping Xie, Edgar Davidson, Xiaohua Ye, Hang Su, Vineet D Menachery, Yize Li, Zihao Yuan, Xianwen Zhang, Antonio E Muruato, Ariadna Grinyo I Escuer, Breanna Tyrell, Kyle Doolan, Benjamin J Doranz, Daniel Wrapp, Paul F Bates, Jason S Mclellan, Susan R Weiss, Ningyan Zhang, Pei-Yong Shi, Zhiqiang An
Molecular determinants and mechanism for antibody cocktail preventing SARS-CoV-2 escape. Nature communications 12 (1) (2021)
Xuping Xie, Yang Liu, Jianying Liu, Xianwen Zhang, Jing Zou, Camila R Fontes-Garfias, Hongjie Xia, Kena A Swanson, Mark Cutler, David Cooper, Vineet D Menachery, Scott C Weaver, Philip R Dormitzer, Pei-Yong Shi
Neutralization of SARS-CoV-2 spike 69/70 deletion, E484K and N501Y variants by BNT162b2 vaccine-elicited sera. Nature medicine 27 (4) (2021)
Antonio E Muruato, Camila R Fontes-Garfias, Ping Ren, Mariano A Garcia-Blanco, Vineet D Menachery, Xuping Xie, Pei-Yong Shi
Author Correction: A high-throughput neutralizing antibody assay for COVID-19 diagnosis and vaccine evaluation. Nature communications 12 (1) (2021)
Pei-Yong Shi, Xuping Xie, Jing Zou, Camila Fontes-Garfias, Hongjie Xia, Kena Swanson, Mark Cutler, David Cooper, Vineet Menachery, Scott C Weaver, Philip Dormitzer
Neutralization of N501Y mutant SARS-CoV-2 by BNT162b2 vaccine-elicited sera. Research square (2021)
Jing Zou, Xuping Xie, Camila R Fontes-Garfias, Kena A Swanson, Isis Kanevsky, Kristin Tompkins, Mark Cutler, David Cooper, Philip R Dormitzer, Pei-Yong Shi
The effect of SARS-CoV-2 D614G mutation on BNT162b2 vaccine-elicited neutralization. NPJ vaccines 6 (1) (2021)
Michael Diamond, Rita Chen, Xuping Xie, James Brett Case, Xianwen Zhang, Laura VanBlargan, Yang Liu, Jianying Liu, John Errico, Emma Winkler, Naveenchandra Suryadevara, Stephen Tahan, Jackson Turner, Wooseob Kim, Aaron J Schmitz, Mahima Thapa, David Wang, Andrianus Boon, Dora Pinto, Rachel Presti, Jane O'Halloran, Alfred Kim, Parakkal Deepak, Daved H Fremont, Davide Corti, Herbert W Virgin, James E Crowe, Lindsay Droit, Ali H Ellebedy, Pei-Yong Shi, Pavlo Gilchuk
SARS-CoV-2 variants show resistance to neutralization by many monoclonal and serum-derived polyclonal antibodies. Research square (2021)
Victor K Outlaw, Francesca T Bovier, Megan C Mears, Maria N Cajimat, Yun Zhu, Michelle J Lin, Amin Addetia, Nicole A P Lieberman, Vikas Peddu, Xuping Xie, Pei-Yong Shi, Alexander L Greninger, Samuel H Gellman, Dennis A Bente, Anne Moscona, Matteo Porotto
Inhibition of Coronavirus Entry In Vitro and Ex Vivo by a Lipid-Conjugated Peptide Derived from the SARS-CoV-2 Spike Glycoprotein HRC Domain. mBio 11 (5) (2020)
Jessica A Plante, Yang Liu, Jianying Liu, Hongjie Xia, Bryan A Johnson, Kumari G Lokugamage, Xianwen Zhang, Antonio E Muruato, Jing Zou, Camila R Fontes-Garfias, Divya Mirchandani, Dionna Scharton, John P Bilello, Zhiqiang Ku, Zhiqiang An, Birte Kalveram, Alexander N Freiberg, Vineet D Menachery, Xuping Xie, Kenneth S Plante, Scott C Weaver, Pei-Yong Shi
Spike mutation D614G alters SARS-CoV-2 fitness. Nature 592 (7852) (2020)
Pei-Yong Shi, Jessica Plante, Yang Liu, Jianying Liu, Hongjie Xia, Bryan Johnson, Kumari Lokugamage, Xianwen Zhang, Antonio Muruato, Jing Zou, Camila Fontes-Garfias, Divya Mirchandani, Dionna Scharton, Birte Kalveram, John Bilello, Zhiqiang Ku, Zhiqiang An, Alexander Freiberg, Vineet Menachery, Xuping Xie, Kenneth Plante, Scott C Weaver
Spike mutation D614G alters SARS-CoV-2 fitness and neutralization susceptibility. Research square (2020)
Xuping Xie, Antonio E Muruato, Xianwen Zhang, Kumari G Lokugamage, Camila R Fontes-Garfias, Jing Zou, Jianying Liu, Ping Ren, Mini Balakrishnan, Tomas Cihlar, Chien-Te Kent Tseng, Shinji Makino, Vineet D Menachery, John P Bilello, Pei-Yong Shi
A nanoluciferase SARS-CoV-2 for rapid neutralization testing and screening of anti-infective drugs for COVID-19. Nature communications 11 (1) (2020)
Maria I Giraldo, Hongjie Xia, Leopoldo Aguilera-Aguirre, Adam Hage, Sarah van Tol, Chao Shan, Xuping Xie, Gail L Sturdevant, Shelly J Robertson, Kristin L McNally, Kimberly Meade-White, Sasha R Azar, Shannan L Rossi, Wendy Maury, Michael Woodson, Holly Ramage, Jeffrey R Johnson, Nevan J Krogan, Marc C Morais, Sonja M Best, Pei-Yong Shi, Ricardo Rajsbaum
Envelope protein ubiquitination drives entry and pathogenesis of Zika virus. Nature 585 (7825) (2020)
Antonio E Muruato, Camila R Fontes-Garfias, Ping Ren, Mariano A Garcia-Blanco, Vineet D Menachery, Xuping Xie, Pei-Yong Shi
A high-throughput neutralizing antibody assay for COVID-19 diagnosis and vaccine evaluation. Nature communications 11 (1) (2020)
Qi Chen, Jin Wu, Qing Ye, Feng Ma, Qian Zhu, Yan Wu, Chao Shan, Xuping Xie, Dapei Li, Xiaoyan Zhan, Chunfeng Li, Xiao-Feng Li, Xiaoling Qin, Tongyan Zhao, Haitao Wu, Pei-Yong Shi, Jianghong Man, Cheng-Feng Qin
Erratum for Chen et al., "Treatment of Human Glioblastoma with a Live Attenuated Zika Virus Vaccine Candidate". mBio 10 (2) (2019)
Daniel P Strange, Boonyanudh Jiyarom, Nima Pourhabibi Zarandi, Xuping Xie, Coleman Baker, Hooman Sadri-Ardekani, Pei-Yong Shi, Saguna Verma
Axl Promotes Zika Virus Entry and Modulates the Antiviral State of Human Sertoli Cells. mBio 10 (4) (2019)
Xianwen Zhang, Xuping Xie, Hongjie Xia, Jing Zou, Linfen Huang, Vsevolod L Popov, Xinwen Chen, Pei-Yong Shi
Zika Virus NS2A-Mediated Virion Assembly. mBio 10 (5) (2019)
Chao Shan, Xuping Xie, Jing Zou, Roland Züst, Bo Zhang, Rebecca Ambrose, Jason Mackenzie, Katja Fink, Pei-Yong Shi
Using a Virion Assembly-Defective Dengue Virus as a Vaccine Approach. Journal of virology 92 (21) (2018)
Qi Chen, Jin Wu, Qing Ye, Feng Ma, Qian Zhu, Yan Wu, Chao Shan, Xuping Xie, Dapei Li, Xiaoyan Zhan, Chunfeng Li, Xiao-Feng Li, Xiaoling Qin, Tongyan Zhao, Haitao Wu, Pei-Yong Shi, Jianghong Man, Cheng-Feng Qin
Treatment of Human Glioblastoma with a Live Attenuated Zika Virus Vaccine Candidate. mBio 9 (5) (2018)
Rafael K Campos, Benjamin Wong, Xuping Xie, Yi-Fan Lu, Pei-Yong Shi, Julien Pompon, Mariano A Garcia-Blanco, Shelton S Bradrick
RPLP1 and RPLP2 Are Essential Flavivirus Host Factors That Promote Early Viral Protein Accumulation. Journal of virology 91 (4) (2017)
Xuping Xie, Yujiao Yang, Antonio E Muruato, Jing Zou, Chao Shan, Bruno T D Nunes, Daniele B A Medeiros, Pedro F C Vasconcelos, Scott C Weaver, Shannan L Rossi, Pei-Yong Shi
Understanding Zika Virus Stability and Developing a Chimeric Vaccine through Functional Analysis. mBio 8 (1) (2017)