Anna Niarakis (A Niarakis)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 19

Top Venues

PLoS computational biology

NPJ systems biology and applications

Briefings in bioinformatics

Scientific data

Université d'Evry-Val-d'Essonne

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Université d'Evry-Val-d'Essonne Sep 01 2015

France

Associate Professor :: Biology

Publications

Naouel Zerrouk, Rachel Alcraft, Michael W J Hall, Franck Augé, Anna Niarakis
Large-scale computational modelling of the M1 and M2 synovial macrophages in rheumatoid arthritis. NPJ systems biology and applications 10 (1) (2024)
Naouel Zerrouk, Rachel Alcraft, Michael W J Hall, Franck Augé, Anna Niarakis
Large-scale computational modelling of the M1 and M2 synovial macrophages in rheumatoid arthritis. NPJ systems biology and applications 10 (1) (2024)
Naouel Zerrouk, Rachel Alcraft, Michael W J Hall, Franck Augé, Anna Niarakis
Large-scale computational modelling of the M1 and M2 synovial macrophages in rheumatoid arthritis. NPJ systems biology and applications 10 (1) (2024)
Sahar Aghakhani, Sylvain Soliman, Anna Niarakis
Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach. PLoS computational biology 18 (12) (2022)
Reinhard C Laubenbacher, Anna Niarakis, T Helikar, Gary C An, B Shapiro, Rahuman S Malik Sheriff, T J Sego, A Knapp, P Macklin, James A Glazier
Building digital twins of the human immune system: toward a roadmap. NPJ digital medicine 5 (1) (2022)
Sahar Aghakhani, Sylvain Soliman, Anna Niarakis
Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach. PLoS computational biology 18 (12) (2022)
Anna Niarakis, Dagmar Waltemath, James Glazier, Falk Schreiber, Sarah M Keating, David Nickerson, Claudine Chaouiya, Anne Siegel, Vincent Noël, Henning Hermjakob, Tomas Helikar, Sylvain Soliman, Laurence Calzone
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology. Briefings in bioinformatics 23 (4) (2022)
Sahar Aghakhani, Sylvain Soliman, Anna Niarakis
Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach. PLoS computational biology 18 (12) (2022)
Sahar Aghakhani, Sylvain Soliman, Anna Niarakis
Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach. PLoS computational biology 18 (12) (2022)
Sahar Aghakhani, Sylvain Soliman, Anna Niarakis
Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach. PLoS computational biology 18 (12) (2022)
Vasundra Touré, Åsmund Flobak, Anna Niarakis, Steven Vercruysse, Martin Kuiper
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling. Briefings in bioinformatics 22 (4) (2021)
Anna Niarakis, Tomas Helikar
A practical guide to mechanistic systems modeling in biology using a logic-based approach. Briefings in bioinformatics 22 (4) (2021)
Quentin Miagoux, Vidisha Singh, Dereck de Mézquita, Valerie Chaudru, Mohamed Elati, Elisabeth Petit-Teixeira, Anna Niarakis
Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map. Journal of personalized medicine 11 (8) (2021)
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert D Phair, Aurelio Orta Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce-de-Leon, Akira Funahashi, Yusuke Hiki, Noriko F Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy D Zucker, Kristie L Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan L M Coort, Lars M T Eijssen, Friederike Ehrhart, Devasahayam Arokiar Balaya Rex, Denise N Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Mohamed Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata P Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Dénes Türei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Kinza Rian, Tomas Helikar, Bhanwar Lal Puniya, Dezső Módos, Agatha Treveil, Márton Ölbei, Bertrand de Meulder, Stephane Ballereau, Aurélien J F Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Wilighagen, Alexander R Pico, Chris T A Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez-Rodriguez, Joaquín Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, null null
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular systems biology 17 (10) (2021)
Marek Ostaszewski, Alexander Mazein, Marc E Gillespie, Inna Kuperstein, Anna Niarakis, Henning Hermjakob, Alexander R Pico, Egon L Wilighagen, Chris T Evelo, Jan Hasenauer, Falk Schreiber, Andreas Dräger, Emek Demir, Olaf Wolkenhauer, Laura I Furlong, Emmanuel Barillot, Joaquín Dopazo, Aurelio Orta Resendiz, Francesco Messina, Alfonso Valencia, Akira Funahashi, Hiroaki Kitano, Charles Auffray, Rudi Balling, Reinhard Schneider
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific data 7 (1) (2020)
Marek Ostaszewski, Alexander Mazein, Marc E Gillespie, Inna Kuperstein, Anna Niarakis, Henning Hermjakob, Alexander R Pico, Egon L Wilighagen, Chris T Evelo, Jan Hasenauer, Falk Schreiber, Andreas Dräger, Emek Demir, Olaf Wolkenhauer, Laura I Furlong, Emmanuel Barillot, Joaquín Dopazo, Aurelio Orta Resendiz, Francesco Messina, Alfonso Valencia, Akira Funahashi, Hiroaki Kitano, Charles Auffray, Rudi Balling, Reinhard Schneider
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific data 7 (1) (2020)
Naouel Zerrouk, Quentin Miagoux, Aurelien Dispot, Mohamed Elati, Anna Niarakis
Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference. Scientific reports 10 (1) (2020)
Sahar Aghakhani, Naouel Zerrouk, Anna Niarakis
Metabolic Reprogramming of Fibroblasts as Therapeutic Target in Rheumatoid Arthritis and Cancer: Deciphering Key Mechanisms Using Computational Systems Biology Approaches. Cancers 13 (1) (2020)
Anna Niarakis, Eleftheria Giannopoulou, Spyros A Syggelos, Elias Panagiotopoulos
Effects of proteasome inhibitors on cytokines, metalloproteinases and their inhibitors and collagen type-I expression in periprosthetic tissues and fibroblasts from loose arthroplasty endoprostheses. Connective tissue research 60 (6) (2019)

Anna Niarakis.css-eqlu8i{font-size:small;padding-left:4px;} (A Niarakis)

Publication Activity (10 Years)

Top Topics

Top Venues

Anna Niarakis (A Niarakis)