Tamas Korcsmaros (Tamas Korcsmáros, Tamás Korcsmáros)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 28

Top Topics

Listeria Monocytogenes

Network Analysis

Ulcerative Colitis

Top Venues

International journal of molecular sciences

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Bence Hajdú, Luca Csabai, Margita Márton, Marianna Holczer, Tamas Korcsmaros, Orsolya Kapuy
Oscillation of Autophagy Induction under Cellular Stress and What Lies behind It, a Systems Biology Study. International journal of molecular sciences 24 (8) (2023)
Bence Hajdú, Luca Csabai, Margita Márton, Marianna Holczer, Tamas Korcsmaros, Orsolya Kapuy
Oscillation of Autophagy Induction under Cellular Stress and What Lies behind It, a Systems Biology Study. International journal of molecular sciences 24 (8) (2023)
Sebastian Lobentanzer, Patrick Aloy, Jan Baumbach, Balazs Bohar, Vincent J Carey, Pornpimol Charoentong, Katharina Danhauser, Tunca Doğan, Johann Dreo, Ian Dunham, Elias Farr, Adrià Fernandez-Torras, Benjamin M Gyori, Michael Hartung, Charles Tapley Hoyt, Christoph Klein, Tamas Korcsmaros, Andreas Maier, Matthias Mann, David Ochoa, Elena Pareja-Lorente, Ferdinand Popp, Martin Preusse, Niklas Probul, Benno Schwikowski, Bünyamin Sen, Maximillian T Strauss, Denes Turei, Erva Ulusoy, Dagmar Waltemath, Judith A H Wodke, Julio Saez-Rodriguez
Democratizing knowledge representation with BioCypher. Nature biotechnology (2023)
Bence Hajdú, Luca Csabai, Margita Márton, Marianna Holczer, Tamas Korcsmaros, Orsolya Kapuy
Oscillation of Autophagy Induction under Cellular Stress and What Lies behind It, a Systems Biology Study. International journal of molecular sciences 24 (8) (2023)
Bence Hajdú, Luca Csabai, Margita Márton, Marianna Holczer, Tamas Korcsmaros, Orsolya Kapuy
Oscillation of Autophagy Induction under Cellular Stress and What Lies behind It, a Systems Biology Study. International journal of molecular sciences 24 (8) (2023)
Jonathan W Lo, Domenico Cozzetto, James L Alexander, Nathan P Danckert, Matthew Madgwick, Naomi Knox, Jillian Yong Xin Sieh, Marton Olbei, Zhigang Liu, Hajir Ibraheim, Jesus Miguens Blanco, Hiromi Kudo, Rocio Castro Seoane, Lucia A Possamai, Robert D Goldin, Julian Marchesi, Tamas Korcsmaros, Graham M Lord, Nicholas Powell
Immune checkpoint inhibitor-induced colitis is mediated by polyfunctional lymphocytes and is dependent on an IL23/IFNγ axis. Nature communications 14 (1) (2023)
Orsolya Kapuy, Tamas Korcsmaros
Chloroquine and COVID-19-A systems biology model uncovers the drug's detrimental effect on autophagy and explains its failure. PloS one 17 (4) (2022)
Polychronis Pavlidis, Anastasia Tsakmaki, Eirini Pantazi, Katherine Li, Domenico Cozzetto, Jonathan Digby-Bell, Feifei Yang, Jonathan W Lo, Elena Alberts, Ana Caroline Costa Sa, Umar Niazi, Joshua R Friedman, Anna K Long, Yuchun Ding, Christopher D Carey, Christopher Andrew Lamb, Mansoor Saqi, Matthew Madgwick, Leila Gul, Agatha Treveil, Tamas Korcsmaros, Thomas T Macdonald, Graham M Lord, Gavin A Bewick, Nicholas Powell
Interleukin-22 regulates neutrophil recruitment in ulcerative colitis and is associated with resistance to ustekinumab therapy. Nature communications 13 (1) (2022)
Martina Poletti, Agatha Treveil, Luca Csabai, Leila Gul, Dezso Modos, Matthew Madgwick, Marton Olbei, Balazs Bohar, Alberto Valdeolivas, Denes Turei, Bram Verstockt, Sergio Triana, Theodore Alexandrov, Julio Saez-Rodriguez, Megan Lynn Stanifer, Steeve Boulant, Tamas Korcsmaros
Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways. NPJ systems biology and applications 8 (1) (2022)
Johanne Brooks-Warburton, Dezső Módos, Padhmanand Sudhakar, Matthew Madgwick, John P Thomas, Balazs Bohar, David Fazekas, Azedine Zoufir, Orsolya Kapuy, Mate Szalay-Beko, Bram Verstockt, Lindsay J Hall, Alastair J M Watson, Mark Tremelling, Miles Parkes, Severine Vermeire, Andreas Bender, Simon R Carding, Tamas Korcsmaros
A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis. Nature communications 13 (1) (2022)
John P Thomas, Márton Ölbei, Johanne Brooks-Warburton, Tamas Korcsmaros, Dezső Módos
Analysing miRNA-Target Gene Networks in Inflammatory Bowel Disease and Other Complex Diseases Using Transcriptomic Data. Genes 13 (2) (2022)
Márton Ölbei, John P Thomas, Isabelle Hautefort, Agatha Treveil, Balazs Bohar, Matthew Madgwick, Lejla Gul, Luca Csabai, Dezső Módos, Tamas Korcsmaros
CytokineLink: A Cytokine Communication Map to Analyse Immune Responses-Case Studies in Inflammatory Bowel Disease and COVID-19. Cells 10 (9) (2021)
Luca Csabai, Dávid Fazekas, Tamás Kadlecsik, Máté Szalay-Bekő, Balázs Bohár, Matthew Madgwick, Dezső Módos, Márton Ölbei, Lejla Gul, Padhmanand Sudhakar, János Kubisch, Oyebode James Oyeyemi, Orsolya Liska, Eszter Ari, Bernadette Hotzi, Viktor A Billes, Eszter Molnár, László Földvári-Nagy, Kitti Csályi, Amanda Demeter, Nóra Pápai, Mihály Koltai, Máté Varga, Katalin Lenti, Illés J Farkas, Dénes Türei, Péter Csermely, Tibor Vellai, Tamas Korcsmaros
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. Nucleic acids research (2021)
Balazs Bohar, David Fazekas, Matthew Madgwick, Luca Csabai, Marton Olbei, Tamas Korcsmaros, Mate Szalay-Beko
Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology. F1000Research 10 (2021)
Balazs Bohar, David Fazekas, Matthew Madgwick, Luca Csabai, Marton Olbei, Tamas Korcsmaros, Mate Szalay-Beko
Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology. F1000Research 10 (2021)
Agatha Treveil, Balazs Bohar, Padhmanand Sudhakar, Lejla Gul, Luca Csabai, Márton Ölbei, Martina Poletti, Matthew Madgwick, Tahila Andrighetti, Isabelle Hautefort, Dezső Módos, Tamas Korcsmaros
ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways. PLoS computational biology 17 (2) (2021)
Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolas Palacio-Escat, Michal Klein, Olga Ivanova, Márton Ölbei, Attila Gabor, Fabian Joachim Theis, Dezső Módos, Tamas Korcsmaros, Julio Saez-Rodriguez
Integrated intra- and intercellular signaling knowledge for multicellular omics analysis. Molecular systems biology 17 (3) (2021)
Balazs Bohar, David Fazekas, Matthew Madgwick, Luca Csabai, Marton Olbei, Tamas Korcsmaros, Mate Szalay-Beko
Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology. F1000Research 10 (2021)
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert D Phair, Aurelio Orta Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce-de-Leon, Akira Funahashi, Yusuke Hiki, Noriko F Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy D Zucker, Kristie L Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan L M Coort, Lars M T Eijssen, Friederike Ehrhart, Devasahayam Arokiar Balaya Rex, Denise N Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Mohamed Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata P Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Dénes Türei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Kinza Rian, Tomas Helikar, Bhanwar Lal Puniya, Dezső Módos, Agatha Treveil, Márton Ölbei, Bertrand de Meulder, Stephane Ballereau, Aurélien J F Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Wilighagen, Alexander R Pico, Chris T A Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez-Rodriguez, Joaquín Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, null null
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular systems biology 17 (10) (2021)
Balazs Bohar, David Fazekas, Matthew Madgwick, Luca Csabai, Marton Olbei, Tamas Korcsmaros, Mate Szalay-Beko
Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology. F1000Research 10 (2021)
Amanda Demeter, Mari Carmen Romero-Mulero, Luca Csabai, Márton Ölbei, Padhmanand Sudhakar, Wilfried Haerty, Tamas Korcsmaros
ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins. Scientific reports 10 (1) (2020)
Emily J Jones, Zoe J Matthews, Lejla Gul, Padhmanand Sudhakar, Agatha Treveil, Devina Divekar, Jasmine Buck, Tomasz Wrzesinski, Matthew Jefferson, Stuart D Armstrong, Lindsay J Hall, Alastair J M Watson, Simon R Carding, Wilfried Haerty, Federica Di Palma, Ulrike Mayer, Penny P Powell, Isabelle Hautefort, Tom Wileman, Tamas Korcsmaros
Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy. Disease models & mechanisms 12 (3) (2019)
Maria New, Tim Van Acker, Jun-Ichi Sakamaki, Ming Jiang, Rebecca E Saunders, Jaclyn Long, Victoria Min-Yi Wang, Axel Behrens, Joana Cerveira, Padhmanand Sudhakar, Tamas Korcsmaros, Harold B J Jefferies, Kevin M Ryan, Michael Howell, Sharon A Tooze
MDH1 and MPP7 Regulate Autophagy in Pancreatic Ductal Adenocarcinoma. Cancer research 79 (8) (2019)
Padhmanand Sudhakar, Anne-Claire Jacomin, Isabelle Hautefort, Siva Samavedam, Koorosh Fatemian, Eszter Ari, Leila Gul, Amanda Demeter, Emily Jones, Tamas Korcsmaros, Ioannis P Nezis
Targeted interplay between bacterial pathogens and host autophagy. Autophagy 15 (9) (2019)
Viktor A Billes, Tibor Kovács, Anna Manzéger, Péter Lőrincz, Sára Szincsák, Ágnes Regős, Péter István Kulcsár, Tamas Korcsmaros, Tamás Lukácsovich, Gyula Hoffmann, Miklós Erdélyi, József Maléth, Krisztina Takács-Vellai, Miklós Sass, Tibor Vellai
Developmentally regulated autophagy is required for eye formation in Drosophila. Autophagy 14 (9) (2018)
Orsolya Kapuy, Diána Papp, Tibor Vellai, Gábor Bánhegyi, Tamas Korcsmaros
Systems-Level Feedbacks of NRF2 Controlling Autophagy upon Oxidative Stress Response. Antioxidants (Basel, Switzerland) 7 (3) (2018)
Aline Métris, Padhmanand Sudhakar, David Fazekas, Amanda Demeter, Eszter Ari, Marton Olbei, Priscilla Branchu, Rob A Kingsley, Jozsef Baranyi, Tamas Korcsmaros
SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation. NPJ systems biology and applications 3 (2017)
Tamas Korcsmaros, Maria Victoria Schneider, Giulio Superti-Furga
Next generation of network medicine: interdisciplinary signaling approaches. Integrative biology : quantitative biosciences from nano to macro 9 (2) (2017)
Daniel V Veres, Dávid M Gyurkó, Benedek Thaler, Kristóf Z Szalay, Dávid Fazekas, Tamas Korcsmaros, Péter Csermely
ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis. Nucleic acids research 43 (Database issue) (2014)