Lincoln D Stein (Lincoln Stein)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 15

Top Topics

Top Venues

Briefings in bioinformatics

Database : the journal of biological databases and curation

bioRxiv : the preprint server for biology

NPJ genomic medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. Database : the journal of biological databases and curation 2024 (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
FAIR Header Reference genome: a TRUSTworthy standard. Briefings in bioinformatics 25 (3) (2024)
Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. Database : the journal of biological databases and curation 2024 (2024)
Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. Database : the journal of biological databases and curation 2024 (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
FAIR Header Reference genome: a TRUSTworthy standard. Briefings in bioinformatics 25 (3) (2024)
Colin Diesh, Robert Buels, Garrett J Stevens, Caroline Bridge, Scott Cain, Lincoln D Stein, Ian H Holmes
Setting Up the JBrowse 2 Genome Browser. Current protocols 4 (8) (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
FAIR Header Reference genome: a TRUSTworthy standard. Briefings in bioinformatics 25 (3) (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
FAIR Header Reference genome: a TRUSTworthy standard. Briefings in bioinformatics 25 (3) (2024)
Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. Database : the journal of biological databases and curation 2024 (2024)
Adam Wright, Mark D Wilkinson, Christopher John Mungall, Scott Cain, Stephen Richards, Paul W Sternberg, Ellen Provin, Jonathan L Jacobs, Scott M Geib, Daniela Raciti, Karen Yook, Lincoln D Stein, David C Molik
DATA RESOURCES AND ANALYSES FAIR Header Reference genome: A TRUSTworthy standard. bioRxiv : the preprint server for biology (2023)
Krishna Tiwari, Lisa Matthews, Bruce May, Veronica Shamovsky, Marija Orlic-Milacic, Karen Rothfels, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Nancy Li, Guanming Wu, Lincoln D Stein, Peter D'Eustachio, Henning Hermjakob
ChatGPT usage in the Reactome curation process. bioRxiv : the preprint server for biology (2023)
Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang M Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob, Lincoln D Stein, Peter D'Eustachio, Guanming Wu
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. bioRxiv : the preprint server for biology (2023)
Pablo Bousquets Muñoz, Ander Díaz-Navarro, Ferran Nadeu, Ana S Pitiot, Sara López-Tamargo, Shimin Shuai, Milagros Balbín, Jose M C Tubio, Sílvia Beà, José Ignacio Martin-Subero, Ana Gutiérrez-Fernández, Lincoln D Stein, Elias Campo, Xose S Puente
PanCancer analysis of somatic mutations in repetitive regions reveals recurrent mutations in snRNA U2. NPJ genomic medicine 7 (1) (2022)
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert D Phair, Aurelio Orta Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce-de-Leon, Akira Funahashi, Yusuke Hiki, Noriko F Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy D Zucker, Kristie L Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan L M Coort, Lars M T Eijssen, Friederike Ehrhart, Devasahayam Arokiar Balaya Rex, Denise N Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Mohamed Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata P Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Dénes Türei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Kinza Rian, Tomas Helikar, Bhanwar Lal Puniya, Dezső Módos, Agatha Treveil, Márton Ölbei, Bertrand de Meulder, Stephane Ballereau, Aurélien J F Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Wilighagen, Alexander R Pico, Chris T A Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez-Rodriguez, Joaquín Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, null null
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular systems biology 17 (10) (2021)
Thawfeek Mohamed Varusai, Steven Jupe, Cristoffer Sevilla, Lisa Matthews, Marc E Gillespie, Lincoln D Stein, Guanming Wu, Peter D'Eustachio, Emmanouil Metzakopian, Henning Hermjakob
Using Reactome to build an autophagy mechanism knowledgebase. Autophagy 17 (6) (2020)