Martina Kutmon

ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 30

Top Venues

Nature methods

F1000Research

PLoS computational biology

BMC biology

Maastricht University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Maastricht University

Netherlands

Assistant Professor :: Department of Bioinformatics (BiGCaT) & Maastricht Centre for Systems Biology (MaCSBio)

Maastricht University

Netherlands

Postdoctoral researcher :: Department of Bioinformatics + Maastricht Centre for Systems Biology

Maastricht University Aug 16 2010 - Sep 01 2014

Netherlands

PhD researcher :: Department of Bioinformatics - BiGCaT

Publications

Andra Waagmeester, Egon L Wilighagen, Andrew I Su, Martina Kutmon, Jose Emilio Labra Gayo, Daniel Fernández-Álvarez, Quentin J Groom, Peter J Schaap, Lisa M Verhagen, Jasper J Koehorst
Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses. BMC biology 21 (1) (2023)
Ayushi Agrawal, Hasan Balcı, Kristina Hanspers, Susan L M Coort, Marvin Martens, Denise N Slenter, Friederike Ehrhart, Daniela Digles, Andra Waagmeester, Isabel Wassink, Tooba Abbassi-Daloii, Elisson N Lopes, Aishwarya Iyer, Javier Millán Acosta, Lars G Willighagen, Kozo Nishida, Anders Riutta, Helena Basaric, Chris T A Evelo, Egon L Wilighagen, Martina Kutmon, Alexander R Pico
WikiPathways 2024: next generation pathway database. Nucleic acids research (2023)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Vitor Martins Dos Santos, Petre Mihail Anton, Barbara Szomolay, Marek Ostaszewski, Ilja Arts, Rui Benfeitas, Victoria Dominguez Del Angel, Polonca Ferk, Dirk Fey, Carole Goble, Martin Golebiewski, Kristina Gruden, Katharina F Heil, Henning Hermjakob, Yolima Cossio, Maria I Klapa, Jasper Koehorst, Alexey N Kolodkin, Martina Kutmon, Brane Leskošek, Sébastien Moretti, Wolfgang Müller, Marco Pagni, Tadeja Rezen, Miguel Rocha, Damjana Rozman, David Šafránek, Rahuman S Malik Sheriff, Maria Suarez-Diez, Kristel Van Steen, Hans Victor Westerhoff, Ulrike Wittig, Katherine J Wolstencroft, Anze Zupanic, Chris T A Evelo, John M Hancock
Systems Biology in ELIXIR: modelling in the spotlight. F1000Research 11 (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods (2022)
Ryan A Miller, Martina Kutmon, Anwesha Bohler, Andra Waagmeester, Chris T Evelo, Egon L Wilighagen
Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions. PloS one 17 (4) (2022)
Vitor Martins Dos Santos, Petre Mihail Anton, Barbara Szomolay, Marek Ostaszewski, Ilja Arts, Rui Benfeitas, Victoria Dominguez Del Angel, Polonca Ferk, Dirk Fey, Carole Goble, Martin Golebiewski, Kristina Gruden, Katharina F Heil, Henning Hermjakob, Yolima Cossio, Maria I Klapa, Jasper Koehorst, Alexey N Kolodkin, Martina Kutmon, Brane Leskošek, Sébastien Moretti, Wolfgang Müller, Marco Pagni, Tadeja Rezen, Miguel Rocha, Damjana Rozman, David Šafránek, Rahuman S Malik Sheriff, Maria Suarez-Diez, Kristel Van Steen, Hans Victor Westerhoff, Ulrike Wittig, Katherine J Wolstencroft, Anze Zupanic, Chris T A Evelo, John M Hancock
Systems Biology in ELIXIR: modelling in the spotlight. F1000Research 11 (2022)
Vitor Martins Dos Santos, Petre Mihail Anton, Barbara Szomolay, Marek Ostaszewski, Ilja Arts, Rui Benfeitas, Victoria Dominguez Del Angel, Polonca Ferk, Dirk Fey, Carole Goble, Martin Golebiewski, Kristina Gruden, Katharina F Heil, Henning Hermjakob, Yolima Cossio, Maria I Klapa, Jasper Koehorst, Alexey N Kolodkin, Martina Kutmon, Brane Leskošek, Sébastien Moretti, Wolfgang Müller, Marco Pagni, Tadeja Rezen, Miguel Rocha, Damjana Rozman, David Šafránek, Rahuman S Malik Sheriff, Maria Suarez-Diez, Kristel Van Steen, Hans Victor Westerhoff, Ulrike Wittig, Katherine J Wolstencroft, Anze Zupanic, Chris T A Evelo, John M Hancock
Systems Biology in ELIXIR: modelling in the spotlight. F1000Research 11 (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Han Jin, Pieter G Goossens, Peter Juhasz, Wouter Eijgelaar, Marco Manca, Joël M H Karel, Evgueni Smirnov, Cornelis J J M Sikkink, Barend M E Mees, Olivia Waring, Kim van Kuijk, Gregorio E Fazzi, Marion J J Gijbels, Martina Kutmon, Chris T A Evelo, Ulf Hedin, Mat J A P Daemen, Judith C Sluimer, Ljubica Matic, Erik A L Biessen
Integrative multiomics analysis of human atherosclerosis reveals a serum response factor-driven network associated with intraplaque hemorrhage. Clinical and translational medicine 11 (6) (2022)
Andra Waagmeester, Egon L Wilighagen, Andrew I Su, Martina Kutmon, Jose Emilio Labra Gayo, Daniel Fernández-Álvarez, Quentin J Groom, Peter J Schaap, Lisa M Verhagen, Jasper J Koehorst
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses. BMC biology 19 (1) (2021)
Kristina Hanspers, Martina Kutmon, Susan L M Coort, Daniela Digles, Lauren J Dupuis, Friederike Ehrhart, Finterly Hu, Elisson N Lopes, Marvin Martens, Nhung Pham, Woosub Shin, Denise N Slenter, Andra Waagmeester, Egon L Wilighagen, Laurent A Winckers, Chris T A Evelo, Alexander R Pico
Ten simple rules for creating reusable pathway models for computational analysis and visualization. PLoS computational biology 17 (8) (2021)
Friederike Ehrhart, Egon L Wilighagen, Martina Kutmon, Max van Hoften, Leopold M G Curfs, Chris T A Evelo
A resource to explore the discovery of rare diseases and their causative genes. Scientific data 8 (1) (2021)
Laurent A Winckers, Chris T A Evelo, Egon L Wilighagen, Martina Kutmon
Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts. International journal of molecular sciences 22 (17) (2021)
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert D Phair, Aurelio Orta Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce-de-Leon, Akira Funahashi, Yusuke Hiki, Noriko F Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy D Zucker, Kristie L Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan L M Coort, Lars M T Eijssen, Friederike Ehrhart, Devasahayam Arokiar Balaya Rex, Denise N Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Mohamed Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata P Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Dénes Türei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Kinza Rian, Tomas Helikar, Bhanwar Lal Puniya, Dezső Módos, Agatha Treveil, Márton Ölbei, Bertrand de Meulder, Stephane Ballereau, Aurélien J F Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Wilighagen, Alexander R Pico, Chris T A Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez-Rodriguez, Joaquín Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, null null
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular systems biology 17 (10) (2021)
Chaitra Sarathy, Marian Breuer, Martina Kutmon, Michiel E Adriaens, Chris T A Evelo, Ilja C W Arts
Comparison of metabolic states using genome-scale metabolic models. PLoS computational biology 17 (11) (2021)
Samar H K Tareen, Martina Kutmon, Theo M de Kok, Edwin C M Mariman, Marleen A van Baak, Chris T Evelo, Michiel E Adriaens, Ilja C W Arts
Stratifying cellular metabolism during weight loss: an interplay of metabolism, metabolic flexibility and inflammation. Scientific reports 10 (1) (2020)
Samar H K Tareen, Michiel E Adriaens, Ilja C W Arts, Theo M de Kok, Roel G Vink, Nadia J T Roumans, Marleen A van Baak, Edwin C M Mariman, Chris T A Evelo, Martina Kutmon
Profiling Cellular Processes in Adipose Tissue during Weight Loss Using Time Series Gene Expression. Genes 9 (11) (2018)
Ryan A Miller, Peter M Woollard, Egon L Wilighagen, Daniela Digles, Martina Kutmon, Antonis Loizou, Andra Waagmeester, Stefan Senger, Chris T A Evelo
Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform. F1000Research 7 (2018)
Martina Kutmon, Friederike Ehrhart, Egon L Wilighagen, Chris T A Evelo, Susan L M Coort
CyTargetLinker app update: A flexible solution for network extension in Cytoscape. F1000Research (2018)
Elisa Cirillo, Martina Kutmon, Manuel Gonzalez Hernandez, Tom Hooimeijer, Michiel E Adriaens, Lars M T Eijssen, Laurence D Parnell, Susan L M Coort, Chris T Evelo
From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results. PloS one 13 (4) (2018)
Ryan A Miller, Peter M Woollard, Egon L Wilighagen, Daniela Digles, Martina Kutmon, Antonis Loizou, Andra Waagmeester, Stefan Senger, Chris T A Evelo
Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform. F1000Research (2018)
Martina Kutmon, Friederike Ehrhart, Egon L Wilighagen, Chris T A Evelo, Susan L M Coort
CyTargetLinker app update: A flexible solution for network extension in Cytoscape. F1000Research 7 (2018)
Andra Waagmeester, Martina Kutmon, Anders Riutta, Ryan A Miller, Egon L Wilighagen, Chris T A Evelo, Alexander R Pico
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources. PLoS computational biology 12 (6) (2016)
Anwesha Bohler, Guanming Wu, Martina Kutmon, Leontius Adhika Pradhana, Susan L M Coort, Kristina Hanspers, Robin Haw, Alexander R Pico, Chris T A Evelo
Reactome from a WikiPathways Perspective. PLoS computational biology 12 (5) (2016)

Martina Kutmon

Publication Activity (10 Years)

Top Topics

Top Venues