Alexander R Pico (Alexander Pico)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 25

Top Venues

F1000Research

Nucleic acids research

Nature immunology

bioRxiv : the preprint server for biology

Gladstone Institutes

Rockefeller University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Gladstone Institutes Apr 01 2004

United States

Associate Director :: Bioinformatics

Education History

Rockefeller University Sep 01 1998 - Jun 01 2003

United States

PHD :: Molecular Neurobiology and Biophysics

University of Oregon Sep 01 1994 - Jun 01 1998

United States

BSC :: Biochemistry

Publications

Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Jae Kyu Ryu, Zhaoqi Yan, Mauricio Montano, Elif G Sozmen, Karuna Dixit, Rahul K Suryawanshi, Yusuke Matsui, Ekram Helmy, Prashant Kaushal, Sara K Makanani, Thomas J Deerinck, Anke Meyer-Franke, Pamela E Rios Coronado, Troy N Trevino, Min-Gyoung Shin, Reshmi Tognatta, Yixin Liu, Renaud Schuck, Lucas Le, Hisao Miyajima, Andrew S Mendiola, Nikhita Arun, Brandon Guo, Taha Y Taha, Ayushi Agrawal, Eilidh MacDonald, Oliver Aries, Aaron Yan, Olivia Weaver, Mark A Petersen, Rosa Meza Acevedo, Maria Del Pilar S Alzamora, Reuben Thomas, Michela Traglia, Valentina L Kouznetsova, Igor F Tsigelny, Alexander R Pico, Kristy Red-Horse, Mark H Ellisman, Nevan J Krogan, Mehdi Bouhaddou, Melanie M Ott, Warner C Greene, Katerina Akassoglou
Fibrin drives thromboinflammation and neuropathology in COVID-19. Nature (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Xuewen Chen, Augustinus G Haribowo, Alan H Baik, Andrea Fossati, Erica Stevenson, Yiwen R Chen, Nabora S Reyes, Tien Peng, Michael A Matthay, Michela Traglia, Alexander R Pico, Daniel F Jarosz, Abigail Buchwalter, Sina Ghaemmaghami, Danielle L Swaney, Isha H Jain
In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response. Science advances 9 (49) (2023)
Min-Gyoung Shin, Alexander R Pico
Using Published Pathway Figures in Enrichment Analysis and Machine Learning. bioRxiv : the preprint server for biology (2023)
Andrew S Mendiola, Zhaoqi Yan, Karuna Dixit, Jeffrey R Johnson, Mehdi Bouhaddou, Anke Meyer-Franke, Min-Gyoung Shin, Yu Yong, Ayushi Agrawal, Eilidh MacDonald, Gayathri Muthukumar, Clairice Pearce, Nikhita Arun, Belinda Cabriga, Rosa Meza-Acevedo, Maria Del Pilar S Alzamora, Scott S Zamvil, Alexander R Pico, Jae Kyu Ryu, Nevan J Krogan, Katerina Akassoglou
Defining blood-induced microglia functions in neurodegeneration through multiomic profiling. Nature immunology (2023)
Ayushi Agrawal, Hasan Balcı, Kristina Hanspers, Susan L M Coort, Marvin Martens, Denise N Slenter, Friederike Ehrhart, Daniela Digles, Andra Waagmeester, Isabel Wassink, Tooba Abbassi-Daloii, Elisson N Lopes, Aishwarya Iyer, Javier Millán Acosta, Lars G Willighagen, Kozo Nishida, Anders Riutta, Helena Basaric, Chris T A Evelo, Egon L Wilighagen, Martina Kutmon, Alexander R Pico
WikiPathways 2024: next generation pathway database. Nucleic acids research (2023)
Jae Kyu Ryu, Elif G Sozmen, Karuna Dixit, Mauricio Montano, Yusuke Matsui, Yixin Liu, Ekram Helmy, Thomas J Deerinck, Zhaoqi Yan, Renaud Schuck, Rosa Meza Acevedo, Collin M Spencer, Reuben Thomas, Alexander R Pico, Scott S Zamvil, Kara L Lynch, Mark H Ellisman, Warner C Greene, Katerina Akassoglou
SARS-CoV-2 spike protein induces abnormal inflammatory blood clots neutralized by fibrin immunotherapy. bioRxiv : the preprint server for biology (2021)
Kristina Hanspers, Martina Kutmon, Susan L M Coort, Daniela Digles, Lauren J Dupuis, Friederike Ehrhart, Finterly Hu, Elisson N Lopes, Marvin Martens, Nhung Pham, Woosub Shin, Denise N Slenter, Andra Waagmeester, Egon L Wilighagen, Laurent A Winckers, Chris T A Evelo, Alexander R Pico
Ten simple rules for creating reusable pathway models for computational analysis and visualization. PLoS computational biology 17 (8) (2021)
Krishna Choudhary, Elaine C Meng, J Javier Diaz-Mejia, Gary D Baider, Alexander R Pico, John H Morris
scNetViz: from single cells to networks using Cytoscape. F1000Research 10 (2021)
Krishna Choudhary, Alexander R Pico
Introducing R as a smart version of calculators enables beginners to explore it on their own. F1000Research 10 (2021)
Krishna Choudhary, Alexander R Pico
Introducing R as a smart version of calculators enables beginners to explore it on their own. F1000Research 10 (2021)
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert D Phair, Aurelio Orta Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce-de-Leon, Akira Funahashi, Yusuke Hiki, Noriko F Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy D Zucker, Kristie L Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan L M Coort, Lars M T Eijssen, Friederike Ehrhart, Devasahayam Arokiar Balaya Rex, Denise N Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Mohamed Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata P Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Dénes Türei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Kinza Rian, Tomas Helikar, Bhanwar Lal Puniya, Dezső Módos, Agatha Treveil, Márton Ölbei, Bertrand de Meulder, Stephane Ballereau, Aurélien J F Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Wilighagen, Alexander R Pico, Chris T A Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez-Rodriguez, Joaquín Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, null null
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular systems biology 17 (10) (2021)
Andra Waagmeester, Gregory Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M Good, Malachi Griffith, Malachi Griffith, Kristina Hanspers, Henning Hermjakob, Toby S Hudson, Kevin Hybiske, Sarah M Keating, Magnus Manske, Michael D Mayers, Daniel Mietchen, Elvira Mitraka, Alexander R Pico, Timothy Putman, Anders Riutta, Núria Queralt-Rosinach, Lynn M Schriml, Thomas M A Shafee, Denise N Slenter, Ralf Stephan, Katherine Thornton, Ginger Tsueng, Roger Tu, Sabah Ul-Hasan, Egon L Wilighagen, Chunlei Wu, Andrew I Su
Wikidata as a knowledge graph for the life sciences. eLife 9 (2020)
Andrew S Mendiola, Jae Kyu Ryu, Sophia Bardehle, Anke Meyer-Franke, Kenny Kean-Hooi Ang, Chris Wilson, Kim M Baeten, Kristina Hanspers, Mario Merlini, Sean Thomas, Mark A Petersen, Alexander G Williams, Reuben Thomas, Victoria A Rafalski, Rosa Meza-Acevedo, Reshmi Tognatta, Zhaoqi Yan, Samuel J Pfaff, Michael R Machado, Catherine Bedard, Pamela E Rios Coronado, Xiqian Jiang, Jin Wang, Michael A Pleiss, Ari J Green, Scott S Zamvil, Alexander R Pico, Benoit G Bruneau, Michelle R Arkin, Katerina Akassoglou
Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation. Nature immunology 21 (5) (2020)
Julia A Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R Pico
RCy3: Network biology using Cytoscape from within R. F1000Research (2019)
J Javier Diaz-Mejia, Elaine C Meng, Alexander R Pico, Sonya A MacParland, Troy Ketela, Trevor J Pugh, Gary D Baider, John H Morris
Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data. F1000Research (2019)
J Javier Diaz-Mejia, Elaine C Meng, Alexander R Pico, Sonya A MacParland, Troy Ketela, Trevor J Pugh, Gary D Baider, John H Morris
Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data. F1000Research (2019)
J Javier Diaz-Mejia, Elaine C Meng, Alexander R Pico, Sonya A MacParland, Troy Ketela, Trevor J Pugh, Gary D Baider, John H Morris
Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data. F1000Research 8 (2019)
Julia A Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R Pico
RCy3: Network biology using Cytoscape from within R. F1000Research 8 (2019)
Julia A Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R Pico
RCy3: Network biology using Cytoscape from within R. F1000Research (2019)
Adam Treister, Alexander R Pico
Identifier Mapping in Cytoscape: idmapper. F1000Research 7 (2018)
Adam Treister, Alexander R Pico
Identifier Mapping in Cytoscape. F1000Research (2018)

Alexander R Pico.css-eqlu8i{font-size:small;padding-left:4px;} (Alexander Pico)

Publication Activity (10 Years)

Top Topics

Top Venues

Alexander R Pico (Alexander Pico)