Samuel V Scarpino

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 20

Top Topics

Anaerobic Digestion

Respiratory Syndrome Coronavirus

Top Venues

Journal of the Royal Society, Interface

medRxiv : the preprint server for health sciences

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Guillaume St-Onge, Jessica T Davis, Laurent Hébert-Dufresne, Antoine Allard, Alessandra Urbinati, Samuel V Scarpino, Matteo Chinazzi, Alessandro Vespignani
Optimization and performance analytics of global aircraft-based wastewater surveillance networks. medRxiv : the preprint server for health sciences (2024)
Guillaume St-Onge, Jessica T Davis, Laurent Hébert-Dufresne, Antoine Allard, Alessandra Urbinati, Samuel V Scarpino, Matteo Chinazzi, Alessandro Vespignani
Optimization and performance analytics of global aircraft-based wastewater surveillance networks. medRxiv : the preprint server for health sciences (2024)
Guillaume St-Onge, Jessica T Davis, Laurent Hébert-Dufresne, Antoine Allard, Alessandra Urbinati, Samuel V Scarpino, Matteo Chinazzi, Alessandro Vespignani
Optimization and performance analytics of global aircraft-based wastewater surveillance networks. medRxiv : the preprint server for health sciences (2024)
Brennan Klein, Harrison Hartle, Munik Shrestha, Ana Cecilia Zenteno, David Barros Sierra Cordera, José R Nicolás-Carlock, Ana I Bento, Benjamin M Althouse, Bernardo Gutierrez, Marina Escalera-Zamudio, Arturo Reyes-Sandoval, Oliver George Pybus, Alessandro Vespignani, Jose Alberto Diaz Quinonez, Samuel V Scarpino, Moritz U G Kraemer
Spatial scales of COVID-19 transmission in Mexico. PNAS nexus 3 (9) (2024)
Megan B Diamond, Elizabeth Yee, Manisha Bhinge, Samuel V Scarpino
Wastewater surveillance facilitates climate change-resilient pathogen monitoring. Science translational medicine 15 (718) (2023)
Chia-Hung Yang, Samuel V Scarpino
The ensemble of gene regulatory networks at mutation-selection balance. Journal of the Royal Society, Interface 20 (198) (2023)
Chia-Hung Yang, Samuel V Scarpino
The ensemble of gene regulatory networks at mutation-selection balance. Journal of the Royal Society, Interface 20 (198) (2023)
Chia-Hung Yang, Samuel V Scarpino
The ensemble of gene regulatory networks at mutation-selection balance. Journal of the Royal Society, Interface 20 (198) (2023)
Brennan Klein, C Brandon Ogbunugafor, Benjamin J Schafer, Zarana Bhadricha, Preeti Kori, Jim Sheldon, Nitish Kaza, Arush Sharma, Emily A Wang, Tina Eliassi-Rad, Samuel V Scarpino, Elizabeth Hinton
COVID-19 amplified racial disparities in the US criminal legal system. Nature (2023)
Chia-Hung Yang, Samuel V Scarpino
The ensemble of gene regulatory networks at mutation-selection balance. Journal of the Royal Society, Interface 20 (198) (2023)
Moritz U G Kraemer, Verity Hill, Christopher Ruis, Simon Dellicour, Sumali Bajaj, John T McCrone, Guy Baele, Kris Varun Parag, Anya Lindström Battle, Bernardo Gutierrez, Benjamin C Jackson, Rachel Colquhoun, Áine Niamh O'Toole, Brennan Klein, Alessandro Vespignani, null null, Erik M Volz, Nuno Rodrigues Faria, David M Aanensen, Nicholas James Loman, Louis du Plessis, Simon Cauchemez, Andrew Rambaut, Samuel V Scarpino, Oliver George Pybus
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence. Science (New York, N.Y.) 373 (6557) (2021)
Carla N Mavian, Sergei Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne-Mieke Vandamme, Simon Dellicour, Samuel V Scarpino, Charlotte J Houldcroft, Julian Villabona-Arenas, Taylor K Paisie, Nídia Sequeira Trovão, Christina Boucher, Yun Zhang, Richard H Scheuermann, Olivier Gascuel, Tommy Tsan-Yuk Lam, Marc A Suchard, Ana Abecasis, Eduan Wilkinson, Tulio de Oliveira, Ana I Bento, Heiko A Schmidt, Darren Martin, James Hadfield, Nuno Faria, Nathan D Grubaugh, Richard A Neher, Guy Baele, Philippe Lemey, Tanja Stadler, Jan Albert, Keith A Crandall, Thomas Leitner, Alexandros Stamatakis, Mattia A Prosperi, Marco Salemi
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable. Proceedings of the National Academy of Sciences of the United States of America 117 (23) (2020)
Benjamin Rader, Samuel V Scarpino, Anjalika Nande, Alison L Hill, Ben Adlam, Robert C Reiner, David M Pigott, Bernardo Gutierrez, Alexander E Zarebski, Munik Shrestha, John S Brownstein, Marcia Caldas de Castro, Christopher Dye, Huaiyu Tian, Oliver George Pybus, Moritz U G Kraemer
Crowding and the shape of COVID-19 epidemics. Nature medicine 26 (12) (2020)
Moritz U G Kraemer, Chia-Hung Yang, Bernardo Gutierrez, Chieh-Hsi Wu, Brennan Klein, David M Pigott, null null, Louis du Plessis, Nuno Rodrigues Faria, Ruoran Li, William P Hanage, John S Brownstein, Maylis Layan, Alessandro Vespignani, Huaiyu Tian, Christopher Dye, Oliver George Pybus, Samuel V Scarpino
The effect of human mobility and control measures on the COVID-19 epidemic in China. Science (New York, N.Y.) 368 (6490) (2020)
Benjamin M Althouse, Edward A Wenger, Joel C Miller, Samuel V Scarpino, Antoine Allard, Laurent Hébert-Dufresne, Hao Hu
Superspreading events in the transmission dynamics of SARS-CoV-2: Opportunities for interventions and control. PLoS biology 18 (11) (2020)
Samuel V Scarpino, James G Scott, Rosalind M M Eggo, Bruce Clements, Nedialko B Dimitrov, Lauren Ancel Meyers
Socioeconomic bias in influenza surveillance. PLoS computational biology 16 (7) (2020)
Rafael F Guerrero, Samuel V Scarpino, João V Rodrigues, Daniel L Hartl, C Brandon Ogbunugafor
Proteostasis Environment Shapes Higher-Order Epistasis Operating on Antibiotic Resistance. Genetics 212 (2) (2019)
Lindsay Meyers, Christine C Ginocchio, Aimie N Faucett, Frederick S Nolte, Per H Gesteland, Amy L Leber, Diane Janowiak, Virginia Donovan, Jennifer Dien Bard, Silvia Spitzer, Kathleen A Stellrecht, Hossein Salimnia, Rangaraj Selvarangan, Stefan Juretschko, Judy A Daly, Jeremy C Wallentine, Kristy Lindsey, Franklin Moore, Sharon L Reed, Maria E Aguero-Rosenfeld, Paul D Fey, Gregory A Storch, Steve J Melnick, Christine C Robinson, Jennifer F Meredith, Camille V Cook, Robert K Nelson, Jay D Jones, Samuel V Scarpino, Benjamin M Althouse, Kirk M Ririe, Bradley A Malin, Mark A Poritz
Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology. JMIR public health and surveillance 4 (3) (2018)
David L Des Marais, Rafael F Guerrero, Jesse R Lasky, Samuel V Scarpino
Topological features of a gene co-expression network predict patterns of natural diversity in environmental response. Proceedings. Biological sciences 284 (1856) (2018)
Antoine Allard, Benjamin M Althouse, Laurent Hébert-Dufresne, Samuel V Scarpino
The risk of sustained sexual transmission of Zika is underestimated. PLoS pathogens 13 (9) (2017)